prot_E-fasciculatus_F_contig16278.4269.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig16278.4269.1
Unique Nameprot_E-fasciculatus_F_contig16278.4269.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length57
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16278.4269.1 vs. uniprot
Match: A0A6H5L453_9PHAE (Protein transport protein SEC23 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L453_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 4.270e-32
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 0 
Query:    1 GLPTGALFAPFSELQPPPPRIPRQPVLCTFCSAYPSPFCRVDPGTGRWRCCFCEKEN 57
            GLPTGALFAPF+ELQP P RIPRQPVLCTFCSAYPSPFCRVDPGTGRWRCCFCEKEN
Sbjct:   29 GLPTGALFAPFAELQPSPARIPRQPVLCTFCSAYPSPFCRVDPGTGRWRCCFCEKEN 85
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16278.4269.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L453_9PHAE4.270e-3294.74Protein transport protein SEC23 n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.40.1670coord: 2..21
e-value: 6.4E-11
score: 43.5
NoneNo IPR availableGENE3D2.30.30.380coord: 22..57
e-value: 6.4E-11
score: 43.5
IPR006895Zinc finger, Sec23/Sec24-typePFAMPF04810zf-Sec23_Sec24coord: 25..57
e-value: 4.7E-10
score: 39.4
IPR037364Protein transport protein Sec23PANTHERPTHR11141PROTEIN TRANSPORT PROTEIN SEC23coord: 2..57
IPR036174Zinc finger, Sec23/Sec24-type superfamilySUPERFAMILY82919Zn-finger domain of Sec23/24coord: 14..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16278contigE-fasciculatus_F_contig16278:2560..2730 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16278.4269.1mRNA_E-fasciculatus_F_contig16278.4269.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig16278 2560..2730 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig16278.4269.1 ID=prot_E-fasciculatus_F_contig16278.4269.1|Name=mRNA_E-fasciculatus_F_contig16278.4269.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=57bp
GLPTGALFAPFSELQPPPPRIPRQPVLCTFCSAYPSPFCRVDPGTGRWRC
CFCEKEN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036174Znf_Sec23_Sec24_sf
IPR037364Sec23
IPR006895Znf_Sec23_Sec24