mRNA_E-fasciculatus_F_contig16278.4269.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16278.4269.1
Unique NamemRNA_E-fasciculatus_F_contig16278.4269.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16278.4269.1 vs. uniprot
Match: A0A6H5L453_9PHAE (Protein transport protein SEC23 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L453_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 4.270e-32
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 GLPTGALFAPFSELQPPPPRIPRQPVLCTFCSAYPSPFCRVDPGTGRWRCCFCEKEN 171
            GLPTGALFAPF+ELQP P RIPRQPVLCTFCSAYPSPFCRVDPGTGRWRCCFCEKEN
Sbjct:   29 GLPTGALFAPFAELQPSPARIPRQPVLCTFCSAYPSPFCRVDPGTGRWRCCFCEKEN 85
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16278.4269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L453_9PHAE4.270e-3294.74Protein transport protein SEC23 n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16278contigE-fasciculatus_F_contig16278:2560..2730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928098.633876-CDS-E-fasciculatus_F_contig16278:2559..27301622928098.633876-CDS-E-fasciculatus_F_contig16278:2559..2730Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16278 2560..2730 +
1695995819.2358358-CDS-E-fasciculatus_F_contig16278:2559..27301695995819.2358358-CDS-E-fasciculatus_F_contig16278:2559..2730Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16278 2560..2730 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16278.4269.1prot_E-fasciculatus_F_contig16278.4269.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16278 2560..2730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16278.4269.1

>prot_E-fasciculatus_F_contig16278.4269.1 ID=prot_E-fasciculatus_F_contig16278.4269.1|Name=mRNA_E-fasciculatus_F_contig16278.4269.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=57bp
GLPTGALFAPFSELQPPPPRIPRQPVLCTFCSAYPSPFCRVDPGTGRWRC
CFCEKEN
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mRNA from alignment at E-fasciculatus_F_contig16278:2560..2730+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16278.4269.1 ID=mRNA_E-fasciculatus_F_contig16278.4269.1|Name=mRNA_E-fasciculatus_F_contig16278.4269.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=171bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16278:2560..2730+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCCTGCCCACGGGCGCGCTGTTCGCCCCCTTCTCCGAGCTGCAGCCGCC
GCCCCCCCGCATCCCGAGGCAGCCGGTGCTTTGCACCTTCTGCTCGGCCT
ACCCTAGCCCCTTCTGTCGGGTGGACCCCGGGACCGGTCGGTGGCGATGC
TGCTTCTGCGAGAAGGAGAAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16278:2560..2730+

>mRNA_E-fasciculatus_F_contig16278.4269.1 ID=mRNA_E-fasciculatus_F_contig16278.4269.1|Name=mRNA_E-fasciculatus_F_contig16278.4269.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=342bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16278:2560..2730+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCCTGCCCACGGGCGCGCTGTTCGCCCCCTTCTCCGAGCTGCAGCCGCC
GCCCCCCCGCATCCCGAGGCAGCCGGTGCTTTGCACCTTCTGCTCGGCCT
ACCCTAGCCCCTTCTGTCGGGTGGACCCCGGGACCGGTCGGTGGCGATGC
TGCTTCTGCGAGAAGGAGAACGGCCTGCCCACGGGCGCGCTGTTCGCCCC
CTTCTCCGAGCTGCAGCCGCCGCCCCCCCGCATCCCGAGGCAGCCGGTGC
TTTGCACCTTCTGCTCGGCCTACCCTAGCCCCTTCTGTCGGGTGGACCCC
GGGACCGGTCGGTGGCGATGCTGCTTCTGCGAGAAGGAGAAC
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