prot_E-fasciculatus_F_contig16195.4220.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig16195.4220.1
Unique Nameprot_E-fasciculatus_F_contig16195.4220.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length143
Homology
BLAST of mRNA_E-fasciculatus_F_contig16195.4220.1 vs. uniprot
Match: A0A6H5JXB1_9PHAE (Ku domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXB1_9PHAE)

HSP 1 Score: 278 bits (712), Expect = 1.970e-89
Identity = 137/142 (96.48%), Postives = 141/142 (99.30%), Query Frame = 0
Query:    1 MPEVEVDFEHQVKGFRYGQDYIPVNSVDEGSLKLPDEPPSLKVLGFTPSSSVERHFYMDDTFVLLPEPGSGQAAGAITSLSSAMRNLGQVAVARFVKRKSGEPWLGILIPDSTGVVPTERLLFQKIPFIEDVRAFNFPSFAK 142
            MPEVEVDFEHQVKGFRYGQDYIPVNSVDEGSLKLPDEPPSLKVLGFTPSSSVERHFYMDDTFV+LPEPGSGQAAGAI+SLSSAMRNL QVAVARFV+RKSGEPWLGILIPD+TGVVPTERLLFQKIPFIEDVRAFNFPSFAK
Sbjct:  263 MPEVEVDFEHQVKGFRYGQDYIPVNSVDEGSLKLPDEPPSLKVLGFTPSSSVERHFYMDDTFVVLPEPGSGQAAGAISSLSSAMRNLDQVAVARFVRRKSGEPWLGILIPDTTGVVPTERLLFQKIPFIEDVRAFNFPSFAK 404          
BLAST of mRNA_E-fasciculatus_F_contig16195.4220.1 vs. uniprot
Match: UPI001929E2C3 (LOW QUALITY PROTEIN: ATP-dependent DNA helicase 2 subunit KU80 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929E2C3)

HSP 1 Score: 109 bits (273), Expect = 4.040e-25
Identity = 60/145 (41.38%), Postives = 97/145 (66.90%), Query Frame = 0
Query:    2 PEVEVDFEHQVKGFRYGQDYIPVNSVDEGSLKL-PDEPPSLKVLGFTPSSSVERHFYMDDTFVLLPEPGSGQAAGAITSLSSAMRNLGQVAVARFVKRKS-GEPWLGILIPDSTGV--VPTERLLFQKIPFIEDVRAFNFPSFAK 142
            P+  V  E ++KG+RYG   IP++S +  S+KL PD+   +K+LGFT SS+++RH+YM D +  +PEPG+ +A  A+++++ AM+ L +VA+ R V R+  G   +GIL P+ + +  +P +   F  +PF EDVR F FPSF++
Sbjct:  277 PDKVVPPEQRIKGYRYGPQVIPISSAEWDSVKLKPDK--GVKLLGFTDSSNIKRHYYMKDVYTFIPEPGNRKAIVAVSAIARAMKELNKVAILRCVWRQGQGSVVIGILSPNVSCMDNIP-DSFYFNILPFAEDVREFQFPSFSR 418          
BLAST of mRNA_E-fasciculatus_F_contig16195.4220.1 vs. uniprot
Match: A0A836DKI7_9ROSI (ATP-dependent DNA helicase 2 subunit KU80 n=1 Tax=Salix suchowensis TaxID=1278906 RepID=A0A836DKI7_9ROSI)

HSP 1 Score: 106 bits (265), Expect = 4.720e-24
Identity = 56/142 (39.44%), Postives = 91/142 (64.08%), Query Frame = 0
Query:    2 PEVEVDFEHQVKGFRYGQDYIPVNSVDEGSLKLPDEPPSLKVLGFTPSSSVERHFYMDDTFVLLPEPGSGQAAGAITSLSSAMRNLGQVAVARFVKRKS-GEPWLGILIPDSTGVVPT-ERLLFQKIPFIEDVRAFNFPSFA 141
            P   V  E ++KG+RYG   +P++S +  ++K   E  S+K+LGFT +S++ RH+YM D  + +PEPG+ +AA A+++L+ AM+ + +VA+ R V R+  G   +G+L P+ +    T +   F  +PF EDVR F FPSF+
Sbjct:  255 PNKVVPPEQRIKGYRYGPQVVPISSAEWDAVKFKPEK-SVKLLGFTDASNIMRHYYMKDVNIFIPEPGNARAALAVSALARAMKEMNKVAILRCVWRQGQGSVVVGVLTPNISEKDSTPDSFYFNTLPFAEDVREFQFPSFS 395          
BLAST of mRNA_E-fasciculatus_F_contig16195.4220.1 vs. uniprot
Match: A0A4U5QUG0_POPAL (ATP-dependent DNA helicase 2 subunit KU80 n=6 Tax=Saliceae TaxID=238069 RepID=A0A4U5QUG0_POPAL)

HSP 1 Score: 106 bits (265), Expect = 4.840e-24
Identity = 57/142 (40.14%), Postives = 91/142 (64.08%), Query Frame = 0
Query:    2 PEVEVDFEHQVKGFRYGQDYIPVNSVDEGSLKLPDEPPSLKVLGFTPSSSVERHFYMDDTFVLLPEPGSGQAAGAITSLSSAMRNLGQVAVARFVKRKS-GEPWLGILIPDSTGVVPT-ERLLFQKIPFIEDVRAFNFPSFA 141
            P   V  E ++KG+RYG   +P++S +  ++K   E  S+K+LGFT +S++ RH+YM D  V +PEPG+ +AA A+++L+ AM+ + +VA+ R V R+  G   +G+L P+ +    T +   F  +PF EDVR F FPSF+
Sbjct:  277 PNKVVPPEQRIKGYRYGPQVVPISSAEWDAVKFKPEK-SVKLLGFTDASNIMRHYYMKDVNVFIPEPGNARAALAVSALARAMKEMNKVAILRCVWRQGQGSVVVGVLTPNISEKDSTPDSFYFNVLPFAEDVREFQFPSFS 417          
BLAST of mRNA_E-fasciculatus_F_contig16195.4220.1 vs. uniprot
Match: A0A5N5KBN1_9ROSI (Ku domain-containing protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5KBN1_9ROSI)

HSP 1 Score: 105 bits (263), Expect = 9.290e-24
Identity = 56/142 (39.44%), Postives = 91/142 (64.08%), Query Frame = 0
Query:    2 PEVEVDFEHQVKGFRYGQDYIPVNSVDEGSLKLPDEPPSLKVLGFTPSSSVERHFYMDDTFVLLPEPGSGQAAGAITSLSSAMRNLGQVAVARFVKRKS-GEPWLGILIPDSTGVVPT-ERLLFQKIPFIEDVRAFNFPSFA 141
            P   V  E ++KG+RYG   +P++S +  ++K   E  S+K+LGFT +S++ RH+YM D  + +PEPG+ +AA A+++L+ AM+ + +VA+ R V R+  G   +G+L P+ +    T +   F  +PF EDVR F FPSF+
Sbjct:  374 PNKVVPPEQRIKGYRYGPQVVPISSAEWDAVKFKPEK-SVKLLGFTDASNIMRHYYMKDVNIFIPEPGNARAALAVSALARAMKEMNKVAILRCVWRQGQGSVAVGVLTPNISEKDSTPDSFYFNILPFAEDVREFQFPSFS 514          
BLAST of mRNA_E-fasciculatus_F_contig16195.4220.1 vs. uniprot
Match: UPI0009E21682 (ATP-dependent DNA helicase 2 subunit KU80 isoform X1 n=2 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E21682)

HSP 1 Score: 105 bits (261), Expect = 1.650e-23
Identity = 55/138 (39.86%), Postives = 91/138 (65.94%), Query Frame = 0
Query:    9 EHQVKGFRYGQDYIPVNSVDEGSLKLPDEPPSLKVLGFTPSSSVERHFYMDDTFVLLPEPGSGQAAGAITSLSSAMRNLGQVAVARFVKRKS-GEPWLGILIPD--STGVVPTERLLFQKIPFIEDVRAFNFPSFAKV 143
            E ++KG+RYG   +P++S +  ++K   E  S+K+LGFT +S++ RH+YM D +V +PEPG+ +A  A++SL+ AM+ + +VA+ R V R+  G   +G+L P+  S+  +P +      +PF EDVR F FPSF+ +
Sbjct:  284 EQRIKGYRYGPQIVPISSAEWEAVKFTPEK-SVKLLGFTDASNIMRHYYMKDVYVFIPEPGNVKAILAVSSLARAMKEMNKVAIMRCVWRQGQGNVIIGVLTPNISSSDNIP-DSFYLNVLPFAEDVREFQFPSFSNL 419          
BLAST of mRNA_E-fasciculatus_F_contig16195.4220.1 vs. uniprot
Match: A0A6A6K212_HEVBR (ATP-dependent DNA helicase 2 subunit KU80 n=6 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6K212_HEVBR)

HSP 1 Score: 105 bits (261), Expect = 1.680e-23
Identity = 60/155 (38.71%), Postives = 95/155 (61.29%), Query Frame = 0
Query:    3 EVEVDFEHQ--------------VKGFRYGQDYIPVNSVDEGSLKLPDEPPSLKVLGFTPSSSVERHFYMDDTFVLLPEPGSGQAAGAITSLSSAMRNLGQVAVARFVKRKS-GEPWLGILIPDSTGVVPT-ERLLFQKIPFIEDVRAFNFPSFA 141
            EV+VD+E++              +KG+RYG   +P++SV+  + K   E  S+K+LGFT +S++ RH+YM D  + + EPG+ +AA A+++L+ AM+ L +VA+ R V R+  G   LG+L P+ +    T +   F  +PF EDVR F FPSF+
Sbjct:  263 EVKVDYEYKSVEDPSKVIPPNQRIKGYRYGPQVVPISSVEWDAFKFKPEK-SVKLLGFTNASNILRHYYMKDVNIFIAEPGNARAAIAVSALARAMKELNKVAIVRCVWRQGQGSVVLGVLTPNLSEKDKTPDSFCFNVLPFAEDVREFQFPSFS 416          
BLAST of mRNA_E-fasciculatus_F_contig16195.4220.1 vs. uniprot
Match: A0A3S3NK88_9MAGN (ATP-dependent DNA helicase 2 subunit KU80 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3NK88_9MAGN)

HSP 1 Score: 104 bits (259), Expect = 3.130e-23
Identity = 56/138 (40.58%), Postives = 90/138 (65.22%), Query Frame = 0
Query:    9 EHQVKGFRYGQDYIPVNSVDEGSLKLPDEPPSLKVLGFTPSSSVERHFYMDDTFVLLPEPGSGQAAGAITSLSSAMRNLGQVAVARFVKRKS-GEPWLGILIPDSTGV--VPTERLLFQKIPFIEDVRAFNFPSFAKV 143
            E ++KG+RYG   +P++S +  ++K   E  S+K+LGFT +S++ RH+YM D  V +PEPG+ +A  A++SL+ AM+ + +VA+ R V R+  G   +G+L P+ + +  VP +   F  +PF EDVR F FPSF  +
Sbjct:  284 EQRIKGYRYGPQVVPISSAEWEAVKFKPEK-SVKLLGFTDASNIMRHYYMKDVNVFIPEPGNTKAILAVSSLARAMKEMNKVAILRCVWRQGQGNVVIGVLTPNLSTLDNVP-DSFYFNVLPFAEDVREFQFPSFGNL 419          
BLAST of mRNA_E-fasciculatus_F_contig16195.4220.1 vs. uniprot
Match: A0A6I9S7F9_ELAGV (ATP-dependent DNA helicase 2 subunit KU80 n=6 Tax=Arecaceae TaxID=4710 RepID=A0A6I9S7F9_ELAGV)

HSP 1 Score: 103 bits (256), Expect = 7.940e-23
Identity = 52/142 (36.62%), Postives = 93/142 (65.49%), Query Frame = 0
Query:    2 PEVEVDFEHQVKGFRYGQDYIPVNSVDEGSLKLPDEPPSLKVLGFTPSSSVERHFYMDDTFVLLPEPGSGQAAGAITSLSSAMRNLGQVAVARFVKRKS-GEPWLGILIPDSTGV--VPTERLLFQKIPFIEDVRAFNFPSF 140
            P+  V  E +++G+RYG   +P++S +  ++K   E   +K+LGFT +S++ RH+YM D ++ +PEPG+ +A  A+++++ AM+++ + A+ R V R+  G   +G+L P+ + V  +P +   F  +PF+EDVR F FPSF
Sbjct:  276 PDKVVPPEQRIRGYRYGPQVVPISSAEWEAVKFKPEK-GVKLLGFTDASNILRHYYMKDVYIFIPEPGNQKAIVAVSAIARAMKDMNKSAILRCVWRQGQGNVVIGVLRPNISSVDNIP-DSFYFNVLPFVEDVREFQFPSF 415          
BLAST of mRNA_E-fasciculatus_F_contig16195.4220.1 vs. uniprot
Match: A0A803NVL4_CANSA (ATP-dependent DNA helicase 2 subunit KU80 n=4 Tax=Cannabis sativa TaxID=3483 RepID=A0A803NVL4_CANSA)

HSP 1 Score: 103 bits (256), Expect = 7.940e-23
Identity = 56/145 (38.62%), Postives = 90/145 (62.07%), Query Frame = 0
Query:    2 PEVEVDFEHQVKGFRYGQDYIPVNSVDEGSLKLPDEPPSLKVLGFTPSSSVERHFYMDDTFVLLPEPGSGQAAGAITSLSSAMRNLGQVAVARFVKRKS-GEPWLGILIPDSTGV--VPTERLLFQKIPFIEDVRAFNFPSFAKV 143
            P   V  E ++KG+RYG   +P++S +  ++K   E  S+KVLGFT + ++ RH+YM D +V +PEPG  +A  A+++L+ AM+   +VA+ R V R+  G   +G+L P+ +    +P +   F  +PF EDVR F FPSF+ +
Sbjct:  277 PSTVVPPEQRIKGYRYGPQVVPISSAEWYAVKFKPEK-SVKVLGFTDAGNIMRHYYMKDAYVFIPEPGKTKAILAVSALARAMKEANKVAILRCVWRQGQGNVVVGVLTPNISDRDNIP-DSFYFNVLPFAEDVREFQFPSFSNL 419          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16195.4220.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXB1_9PHAE1.970e-8996.48Ku domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
UPI001929E2C34.040e-2541.38LOW QUALITY PROTEIN: ATP-dependent DNA helicase 2 ... [more]
A0A836DKI7_9ROSI4.720e-2439.44ATP-dependent DNA helicase 2 subunit KU80 n=1 Tax=... [more]
A0A4U5QUG0_POPAL4.840e-2440.14ATP-dependent DNA helicase 2 subunit KU80 n=6 Tax=... [more]
A0A5N5KBN1_9ROSI9.290e-2439.44Ku domain-containing protein n=1 Tax=Salix brachis... [more]
UPI0009E216821.650e-2339.86ATP-dependent DNA helicase 2 subunit KU80 isoform ... [more]
A0A6A6K212_HEVBR1.680e-2338.71ATP-dependent DNA helicase 2 subunit KU80 n=6 Tax=... [more]
A0A3S3NK88_9MAGN3.130e-2340.58ATP-dependent DNA helicase 2 subunit KU80 n=1 Tax=... [more]
A0A6I9S7F9_ELAGV7.940e-2336.62ATP-dependent DNA helicase 2 subunit KU80 n=6 Tax=... [more]
A0A803NVL4_CANSA7.940e-2338.62ATP-dependent DNA helicase 2 subunit KU80 n=4 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006164Ku70/Ku80 beta-barrel domainSMARTSM00559ku_4coord: 3..143
e-value: 2.4E-19
score: 80.3
IPR006164Ku70/Ku80 beta-barrel domainPFAMPF02735Kucoord: 6..140
e-value: 7.1E-29
score: 101.0
IPR016194SPOC-like, C-terminal domain superfamilyGENE3D2.40.290.10coord: 1..142
e-value: 2.2E-38
score: 133.8
IPR016194SPOC-like, C-terminal domain superfamilySUPERFAMILY100939SPOC domain-likecoord: 3..141
NoneNo IPR availablePANTHERPTHR12604:SF4X-RAY REPAIR CROSS-COMPLEMENTING PROTEIN 5coord: 4..141
NoneNo IPR availablePANTHERPTHR12604KU AUTOANTIGEN DNA HELICASEcoord: 4..141

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16195contigE-fasciculatus_F_contig16195:321..1649 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16195.4220.1mRNA_E-fasciculatus_F_contig16195.4220.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig16195 318..1649 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig16195.4220.1 ID=prot_E-fasciculatus_F_contig16195.4220.1|Name=mRNA_E-fasciculatus_F_contig16195.4220.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=143bp
MPEVEVDFEHQVKGFRYGQDYIPVNSVDEGSLKLPDEPPSLKVLGFTPSS
SVERHFYMDDTFVLLPEPGSGQAAGAITSLSSAMRNLGQVAVARFVKRKS
GEPWLGILIPDSTGVVPTERLLFQKIPFIEDVRAFNFPSFAKV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016194SPOC-like_C_dom_sf
IPR006164Ku70/Ku80_beta-barrel_dom