mRNA_E-fasciculatus_F_contig16195.4220.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig16195.4220.1 vs. uniprot
Match: A0A6H5JXB1_9PHAE (Ku domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXB1_9PHAE) HSP 1 Score: 279 bits (714), Expect = 1.030e-89 Identity = 138/143 (96.50%), Postives = 142/143 (99.30%), Query Frame = 1
Query: 1 EMPEVEVDFEHQVKGFRYGQDYIPVNSVDEGSLKLPDEPPSLKVLGFTPSSSVERHFYMDDTFVLLPEPGSGQAAGAITSLSSAMRNLGQVAVARFVKRKSGEPWLGILIPDSTGVVPTERLLFQKIPFIEDVRAFNFPSFAK 429
EMPEVEVDFEHQVKGFRYGQDYIPVNSVDEGSLKLPDEPPSLKVLGFTPSSSVERHFYMDDTFV+LPEPGSGQAAGAI+SLSSAMRNL QVAVARFV+RKSGEPWLGILIPD+TGVVPTERLLFQKIPFIEDVRAFNFPSFAK
Sbjct: 262 EMPEVEVDFEHQVKGFRYGQDYIPVNSVDEGSLKLPDEPPSLKVLGFTPSSSVERHFYMDDTFVVLPEPGSGQAAGAISSLSSAMRNLDQVAVARFVRRKSGEPWLGILIPDTTGVVPTERLLFQKIPFIEDVRAFNFPSFAK 404
BLAST of mRNA_E-fasciculatus_F_contig16195.4220.1 vs. uniprot
Match: UPI001929E2C3 (LOW QUALITY PROTEIN: ATP-dependent DNA helicase 2 subunit KU80 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929E2C3) HSP 1 Score: 109 bits (273), Expect = 4.190e-25 Identity = 61/147 (41.50%), Postives = 98/147 (66.67%), Query Frame = 1
Query: 1 EMPEVEVDFEHQVKGFRYGQDYIPVNSVDEGSLKL-PDEPPSLKVLGFTPSSSVERHFYMDDTFVLLPEPGSGQAAGAITSLSSAMRNLGQVAVARFVKRKS-GEPWLGILIPDSTGV--VPTERLLFQKIPFIEDVRAFNFPSFAK 429
E P+ V E ++KG+RYG IP++S + S+KL PD+ +K+LGFT SS+++RH+YM D + +PEPG+ +A A+++++ AM+ L +VA+ R V R+ G +GIL P+ + + +P + F +PF EDVR F FPSF++
Sbjct: 275 EDPDKVVPPEQRIKGYRYGPQVIPISSAEWDSVKLKPDK--GVKLLGFTDSSNIKRHYYMKDVYTFIPEPGNRKAIVAVSAIARAMKELNKVAILRCVWRQGQGSVVIGILSPNVSCMDNIP-DSFYFNILPFAEDVREFQFPSFSR 418
BLAST of mRNA_E-fasciculatus_F_contig16195.4220.1 vs. uniprot
Match: A0A836DKI7_9ROSI (ATP-dependent DNA helicase 2 subunit KU80 n=1 Tax=Salix suchowensis TaxID=1278906 RepID=A0A836DKI7_9ROSI) HSP 1 Score: 106 bits (265), Expect = 4.890e-24 Identity = 57/144 (39.58%), Postives = 92/144 (63.89%), Query Frame = 1
Query: 1 EMPEVEVDFEHQVKGFRYGQDYIPVNSVDEGSLKLPDEPPSLKVLGFTPSSSVERHFYMDDTFVLLPEPGSGQAAGAITSLSSAMRNLGQVAVARFVKRKS-GEPWLGILIPDSTGVVPT-ERLLFQKIPFIEDVRAFNFPSFA 426
E P V E ++KG+RYG +P++S + ++K E S+K+LGFT +S++ RH+YM D + +PEPG+ +AA A+++L+ AM+ + +VA+ R V R+ G +G+L P+ + T + F +PF EDVR F FPSF+
Sbjct: 253 EDPNKVVPPEQRIKGYRYGPQVVPISSAEWDAVKFKPEK-SVKLLGFTDASNIMRHYYMKDVNIFIPEPGNARAALAVSALARAMKEMNKVAILRCVWRQGQGSVVVGVLTPNISEKDSTPDSFYFNTLPFAEDVREFQFPSFS 395
BLAST of mRNA_E-fasciculatus_F_contig16195.4220.1 vs. uniprot
Match: A0A4U5QUG0_POPAL (ATP-dependent DNA helicase 2 subunit KU80 n=6 Tax=Saliceae TaxID=238069 RepID=A0A4U5QUG0_POPAL) HSP 1 Score: 106 bits (265), Expect = 5.010e-24 Identity = 58/144 (40.28%), Postives = 92/144 (63.89%), Query Frame = 1
Query: 1 EMPEVEVDFEHQVKGFRYGQDYIPVNSVDEGSLKLPDEPPSLKVLGFTPSSSVERHFYMDDTFVLLPEPGSGQAAGAITSLSSAMRNLGQVAVARFVKRKS-GEPWLGILIPDSTGVVPT-ERLLFQKIPFIEDVRAFNFPSFA 426
E P V E ++KG+RYG +P++S + ++K E S+K+LGFT +S++ RH+YM D V +PEPG+ +AA A+++L+ AM+ + +VA+ R V R+ G +G+L P+ + T + F +PF EDVR F FPSF+
Sbjct: 275 EDPNKVVPPEQRIKGYRYGPQVVPISSAEWDAVKFKPEK-SVKLLGFTDASNIMRHYYMKDVNVFIPEPGNARAALAVSALARAMKEMNKVAILRCVWRQGQGSVVVGVLTPNISEKDSTPDSFYFNVLPFAEDVREFQFPSFS 417
BLAST of mRNA_E-fasciculatus_F_contig16195.4220.1 vs. uniprot
Match: A0A5N5KBN1_9ROSI (Ku domain-containing protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5KBN1_9ROSI) HSP 1 Score: 105 bits (263), Expect = 9.620e-24 Identity = 57/144 (39.58%), Postives = 92/144 (63.89%), Query Frame = 1
Query: 1 EMPEVEVDFEHQVKGFRYGQDYIPVNSVDEGSLKLPDEPPSLKVLGFTPSSSVERHFYMDDTFVLLPEPGSGQAAGAITSLSSAMRNLGQVAVARFVKRKS-GEPWLGILIPDSTGVVPT-ERLLFQKIPFIEDVRAFNFPSFA 426
E P V E ++KG+RYG +P++S + ++K E S+K+LGFT +S++ RH+YM D + +PEPG+ +AA A+++L+ AM+ + +VA+ R V R+ G +G+L P+ + T + F +PF EDVR F FPSF+
Sbjct: 372 EDPNKVVPPEQRIKGYRYGPQVVPISSAEWDAVKFKPEK-SVKLLGFTDASNIMRHYYMKDVNIFIPEPGNARAALAVSALARAMKEMNKVAILRCVWRQGQGSVAVGVLTPNISEKDSTPDSFYFNILPFAEDVREFQFPSFS 514
BLAST of mRNA_E-fasciculatus_F_contig16195.4220.1 vs. uniprot
Match: UPI0009E21682 (ATP-dependent DNA helicase 2 subunit KU80 isoform X1 n=2 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E21682) HSP 1 Score: 105 bits (261), Expect = 1.710e-23 Identity = 55/138 (39.86%), Postives = 91/138 (65.94%), Query Frame = 1
Query: 28 EHQVKGFRYGQDYIPVNSVDEGSLKLPDEPPSLKVLGFTPSSSVERHFYMDDTFVLLPEPGSGQAAGAITSLSSAMRNLGQVAVARFVKRKS-GEPWLGILIPD--STGVVPTERLLFQKIPFIEDVRAFNFPSFAKV 432
E ++KG+RYG +P++S + ++K E S+K+LGFT +S++ RH+YM D +V +PEPG+ +A A++SL+ AM+ + +VA+ R V R+ G +G+L P+ S+ +P + +PF EDVR F FPSF+ +
Sbjct: 284 EQRIKGYRYGPQIVPISSAEWEAVKFTPEK-SVKLLGFTDASNIMRHYYMKDVYVFIPEPGNVKAILAVSSLARAMKEMNKVAIMRCVWRQGQGNVIIGVLTPNISSSDNIP-DSFYLNVLPFAEDVREFQFPSFSNL 419
BLAST of mRNA_E-fasciculatus_F_contig16195.4220.1 vs. uniprot
Match: A0A6A6K212_HEVBR (ATP-dependent DNA helicase 2 subunit KU80 n=6 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6K212_HEVBR) HSP 1 Score: 104 bits (259), Expect = 3.240e-23 Identity = 60/155 (38.71%), Postives = 95/155 (61.29%), Query Frame = 1
Query: 10 EVEVDFEHQ--------------VKGFRYGQDYIPVNSVDEGSLKLPDEPPSLKVLGFTPSSSVERHFYMDDTFVLLPEPGSGQAAGAITSLSSAMRNLGQVAVARFVKRKS-GEPWLGILIPDSTGVVPT-ERLLFQKIPFIEDVRAFNFPSFA 426
EV+VD+E++ +KG+RYG +P++SV+ + K E S+K+LGFT +S++ RH+YM D + + EPG+ +AA A+++L+ AM+ L +VA+ R V R+ G LG+L P+ + T + F +PF EDVR F FPSF+
Sbjct: 263 EVKVDYEYKSVEDPSKVIPPNQRIKGYRYGPQVVPISSVEWDAFKFKPEK-SVKLLGFTNASNILRHYYMKDVNIFIAEPGNARAAIAVSALARAMKELNKVAIVRCVWRQGQGSVVLGVLTPNLSEKDKTPDSFCFNVLPFAEDVREFQFPSFS 416
BLAST of mRNA_E-fasciculatus_F_contig16195.4220.1 vs. uniprot
Match: A0A3S3NK88_9MAGN (ATP-dependent DNA helicase 2 subunit KU80 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3NK88_9MAGN) HSP 1 Score: 104 bits (259), Expect = 3.250e-23 Identity = 56/138 (40.58%), Postives = 90/138 (65.22%), Query Frame = 1
Query: 28 EHQVKGFRYGQDYIPVNSVDEGSLKLPDEPPSLKVLGFTPSSSVERHFYMDDTFVLLPEPGSGQAAGAITSLSSAMRNLGQVAVARFVKRKS-GEPWLGILIPDSTGV--VPTERLLFQKIPFIEDVRAFNFPSFAKV 432
E ++KG+RYG +P++S + ++K E S+K+LGFT +S++ RH+YM D V +PEPG+ +A A++SL+ AM+ + +VA+ R V R+ G +G+L P+ + + VP + F +PF EDVR F FPSF +
Sbjct: 284 EQRIKGYRYGPQVVPISSAEWEAVKFKPEK-SVKLLGFTDASNIMRHYYMKDVNVFIPEPGNTKAILAVSSLARAMKEMNKVAILRCVWRQGQGNVVIGVLTPNLSTLDNVP-DSFYFNVLPFAEDVREFQFPSFGNL 419
BLAST of mRNA_E-fasciculatus_F_contig16195.4220.1 vs. uniprot
Match: A0A6I9S7F9_ELAGV (ATP-dependent DNA helicase 2 subunit KU80 n=6 Tax=Arecaceae TaxID=4710 RepID=A0A6I9S7F9_ELAGV) HSP 1 Score: 103 bits (256), Expect = 8.230e-23 Identity = 53/144 (36.81%), Postives = 94/144 (65.28%), Query Frame = 1
Query: 1 EMPEVEVDFEHQVKGFRYGQDYIPVNSVDEGSLKLPDEPPSLKVLGFTPSSSVERHFYMDDTFVLLPEPGSGQAAGAITSLSSAMRNLGQVAVARFVKRKS-GEPWLGILIPDSTGV--VPTERLLFQKIPFIEDVRAFNFPSF 423
E P+ V E +++G+RYG +P++S + ++K E +K+LGFT +S++ RH+YM D ++ +PEPG+ +A A+++++ AM+++ + A+ R V R+ G +G+L P+ + V +P + F +PF+EDVR F FPSF
Sbjct: 274 EDPDKVVPPEQRIRGYRYGPQVVPISSAEWEAVKFKPEK-GVKLLGFTDASNILRHYYMKDVYIFIPEPGNQKAIVAVSAIARAMKDMNKSAILRCVWRQGQGNVVIGVLRPNISSVDNIP-DSFYFNVLPFVEDVREFQFPSF 415
BLAST of mRNA_E-fasciculatus_F_contig16195.4220.1 vs. uniprot
Match: A0A803NVL4_CANSA (ATP-dependent DNA helicase 2 subunit KU80 n=4 Tax=Cannabis sativa TaxID=3483 RepID=A0A803NVL4_CANSA) HSP 1 Score: 103 bits (256), Expect = 8.230e-23 Identity = 57/147 (38.78%), Postives = 91/147 (61.90%), Query Frame = 1
Query: 1 EMPEVEVDFEHQVKGFRYGQDYIPVNSVDEGSLKLPDEPPSLKVLGFTPSSSVERHFYMDDTFVLLPEPGSGQAAGAITSLSSAMRNLGQVAVARFVKRKS-GEPWLGILIPDSTGV--VPTERLLFQKIPFIEDVRAFNFPSFAKV 432
E P V E ++KG+RYG +P++S + ++K E S+KVLGFT + ++ RH+YM D +V +PEPG +A A+++L+ AM+ +VA+ R V R+ G +G+L P+ + +P + F +PF EDVR F FPSF+ +
Sbjct: 275 EDPSTVVPPEQRIKGYRYGPQVVPISSAEWYAVKFKPEK-SVKVLGFTDAGNIMRHYYMKDAYVFIPEPGKTKAILAVSALARAMKEANKVAILRCVWRQGQGNVVVGVLTPNISDRDNIP-DSFYFNVLPFAEDVREFQFPSFSNL 419 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16195.4220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig16195.4220.1 >prot_E-fasciculatus_F_contig16195.4220.1 ID=prot_E-fasciculatus_F_contig16195.4220.1|Name=mRNA_E-fasciculatus_F_contig16195.4220.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=143bp MPEVEVDFEHQVKGFRYGQDYIPVNSVDEGSLKLPDEPPSLKVLGFTPSSback to top mRNA from alignment at E-fasciculatus_F_contig16195:318..1649+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig16195.4220.1 ID=mRNA_E-fasciculatus_F_contig16195.4220.1|Name=mRNA_E-fasciculatus_F_contig16195.4220.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1332bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16195:318..1649+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16195:318..1649+ >mRNA_E-fasciculatus_F_contig16195.4220.1 ID=mRNA_E-fasciculatus_F_contig16195.4220.1|Name=mRNA_E-fasciculatus_F_contig16195.4220.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=858bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16195:318..1649+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |