prot_E-fasciculatus_F_contig15451.3821.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-fasciculatus_F_contig15451.3821.1
Unique Name	prot_E-fasciculatus_F_contig15451.3821.1
Type	polypeptide
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length	122

Homology

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BLAST of mRNA_E-fasciculatus_F_contig15451.3821.1 vs. uniprot
Match: A0A6H5KR08_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR08_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 1.120e-77
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0

Query:    1 YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCSACGSLLSTSARRGAVATAGQS 122
            YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRH+AHVCS CGSLLSTSARRGAVATAGQS
Sbjct:   79 YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHIAHVCSTCGSLLSTSARRGAVATAGQS 200

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BLAST of mRNA_E-fasciculatus_F_contig15451.3821.1 vs. uniprot
Match: D8LGZ7_ECTSI (DNA-directed RNA polymerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGZ7_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 7.660e-72
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0

Query:    1 YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCSACGSLLSTSARRGAVATAGQS 122
            YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCSACGSLLSTSARRGAVATAGQS
Sbjct:  880 YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCSACGSLLSTSARRGAVATAGQS 1001

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BLAST of mRNA_E-fasciculatus_F_contig15451.3821.1 vs. uniprot
Match: A0A7S3UTQ0_HETAK (DNA-directed RNA polymerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTQ0_HETAK)

HSP 1 Score: 207 bits (528), Expect = 1.010e-62
Identity = 104/122 (85.25%), Postives = 110/122 (90.16%), Query Frame = 0

Query:    1 YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCSACGSLLSTSARRGAVATAGQS 122
            YAYHGSEPLYSGV+GTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVN LTRQP+KGRK  GG+R GEMERDALLSHGAAFLLHDRLMNCSDRH A VCS CGS+LST   R ++ TAGQS
Sbjct:  325 YAYHGSEPLYSGVSGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNPLTRQPVKGRKRHGGIRFGEMERDALLSHGAAFLLHDRLMNCSDRHPALVCSKCGSVLSTVTTRKSILTAGQS 446

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BLAST of mRNA_E-fasciculatus_F_contig15451.3821.1 vs. uniprot
Match: A0A835YVF9_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF9_9STRA)

HSP 1 Score: 206 bits (524), Expect = 2.790e-59
Identity = 101/122 (82.79%), Postives = 112/122 (91.80%), Query Frame = 0

Query:    1 YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCSACGSLLSTSARRGAVATAGQS 122
            YAY+GSEPLYSG++GTVMHADIFIGLVYYQRLRHMVSDKSQVRA+G VN LTRQPIKGRKNKGG+R GEMERD+LLSHGAAFLLHDRLMNCSDRH+AHVC  CGS+LS   +R AV +AG+S
Sbjct:  994 YAYYGSEPLYSGISGTVMHADIFIGLVYYQRLRHMVSDKSQVRASGAVNPLTRQPIKGRKNKGGIRFGEMERDSLLSHGAAFLLHDRLMNCSDRHLAHVCCTCGSMLSPCHQRSAVTSAGRS 1115

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BLAST of mRNA_E-fasciculatus_F_contig15451.3821.1 vs. uniprot
Match: A0A7S2V1Y1_9STRA (DNA-directed RNA polymerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Y1_9STRA)

HSP 1 Score: 195 bits (495), Expect = 5.480e-59
Identity = 96/121 (79.34%), Postives = 105/121 (86.78%), Query Frame = 0

Query:    1 YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCSACGSLLSTSARRGAVATAGQ 121
            YAY+GSEPLYSG++GTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVN LTRQPIKGRK  GG+R GEMERD+LLSHGA+FLLHDRLMNCSDRH   +C+ CGSLLS +  R  V   GQ
Sbjct:  210 YAYYGSEPLYSGISGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNPLTRQPIKGRKRHGGIRFGEMERDSLLSHGASFLLHDRLMNCSDRHTGWICADCGSLLSPTTLRNPVEYIGQ 330

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BLAST of mRNA_E-fasciculatus_F_contig15451.3821.1 vs. uniprot
Match: A0A3R7ERU9_9STRA (DNA-directed RNA polymerase subunit beta (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7ERU9_9STRA)

HSP 1 Score: 196 bits (498), Expect = 2.250e-56
Identity = 95/122 (77.87%), Postives = 109/122 (89.34%), Query Frame = 0

Query:    1 YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCSACGSLLSTSARRGAVATAGQS 122
            Y Y GSEPLYSG+TGTVMHADI++G+VYYQRLRHMVSDKSQVRATGP+N LTRQP+KGRK KGG+R GEMERD+LL+HG AFLLHDRLMNCSD+H+A VC+ CGSLLST   R +V+ AGQS
Sbjct:  621 YNYMGSEPLYSGLTGTVMHADIYMGVVYYQRLRHMVSDKSQVRATGPMNSLTRQPLKGRKKKGGIRFGEMERDSLLAHGCAFLLHDRLMNCSDKHIATVCTKCGSLLSTWTARASVSEAGQS 742

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BLAST of mRNA_E-fasciculatus_F_contig15451.3821.1 vs. uniprot
Match: A0A024U2C2_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024U2C2_9STRA)

HSP 1 Score: 196 bits (499), Expect = 6.730e-56
Identity = 95/122 (77.87%), Postives = 109/122 (89.34%), Query Frame = 0

Query:    1 YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCSACGSLLSTSARRGAVATAGQS 122
            Y Y GSEPLYSG+TGTVMHADI++G+VYYQRLRHMVSDKSQVRATGP+N LTRQP+KGRK KGG+R GEMERD+LL+HG AFLLHDRLMNCSD+H+A VC+ CGSLLST  +R +V  AGQS
Sbjct:  993 YNYMGSEPLYSGLTGTVMHADIYMGVVYYQRLRHMVSDKSQVRATGPMNSLTRQPLKGRKKKGGIRFGEMERDSLLAHGCAFLLHDRLMNCSDKHIATVCTKCGSLLSTWTQRASVTDAGQS 1114

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BLAST of mRNA_E-fasciculatus_F_contig15451.3821.1 vs. uniprot
Match: A0A7S2V714_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2V714_9STRA)

HSP 1 Score: 193 bits (490), Expect = 7.720e-56
Identity = 92/122 (75.41%), Postives = 106/122 (86.89%), Query Frame = 0

Query:    1 YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCSACGSLLSTSARRGAVATAGQS 122
            Y Y+GSEPLYSGV+G +MHAD++IG+VYYQRLRHMVSDK QVRATGP NQLTRQPIKGRK  GG+RLGEMERD+LLSHGAAFL+HDRL+NCSDRH+A+ C  CG LL+ S  R  + TAGQS
Sbjct:  487 YNYYGSEPLYSGVSGCIMHADLYIGVVYYQRLRHMVSDKYQVRATGPTNQLTRQPIKGRKKGGGIRLGEMERDSLLSHGAAFLMHDRLLNCSDRHIAYACCRCGDLLNPSTERSTLQTAGQS 608

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BLAST of mRNA_E-fasciculatus_F_contig15451.3821.1 vs. uniprot
Match: W4FT36_9STRA (DNA-directed RNA polymerase subunit beta n=9 Tax=Aphanomyces TaxID=100860 RepID=W4FT36_9STRA)

HSP 1 Score: 196 bits (498), Expect = 9.200e-56
Identity = 95/122 (77.87%), Postives = 109/122 (89.34%), Query Frame = 0

Query:    1 YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCSACGSLLSTSARRGAVATAGQS 122
            Y Y GSEPLYSG+TGTVMHADI++G+VYYQRLRHMVSDKSQVRATGP+N LTRQP+KGRK KGG+R GEMERD+LL+HG AFLLHDRLMNCSD+H+A VC+ CGSLLST   R +V+ AGQS
Sbjct:  996 YNYMGSEPLYSGLTGTVMHADIYMGVVYYQRLRHMVSDKSQVRATGPMNSLTRQPLKGRKKKGGIRFGEMERDSLLAHGCAFLLHDRLMNCSDKHIATVCTKCGSLLSTWTARASVSEAGQS 1117

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BLAST of mRNA_E-fasciculatus_F_contig15451.3821.1 vs. uniprot
Match: A0A6G0W8Q0_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W8Q0_9STRA)

HSP 1 Score: 196 bits (497), Expect = 1.250e-55
Identity = 94/122 (77.05%), Postives = 109/122 (89.34%), Query Frame = 0

Query:    1 YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCSACGSLLSTSARRGAVATAGQS 122
            Y Y GSEPLYSG+TGTVMHADI++G+VYYQRLRHMVSDKSQVRATGP N LTRQP+KGRK +GG+R GEMERDALL+HG +FLLHDRLMNCSD+H+A VC+ CGSLLST  +R +V+ AGQS
Sbjct:  992 YNYMGSEPLYSGLTGTVMHADIYMGVVYYQRLRHMVSDKSQVRATGPTNSLTRQPVKGRKKRGGIRFGEMERDALLAHGTSFLLHDRLMNCSDKHIATVCTKCGSLLSTWTQRASVSDAGQS 1113

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig15451.3821.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig15451.3821.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KR08_9PHAE	1.120e-77	98.36	DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp....	[more]
D8LGZ7_ECTSI	7.660e-72	100.00	DNA-directed RNA polymerase (Fragment) n=1 Tax=Ect...	[more]
A0A7S3UTQ0_HETAK	1.010e-62	85.25	DNA-directed RNA polymerase n=1 Tax=Heterosigma ak...	[more]
A0A835YVF9_9STRA	2.790e-59	82.79	DNA-directed RNA polymerase subunit beta n=1 Tax=T...	[more]
A0A7S2V1Y1_9STRA	5.480e-59	79.34	DNA-directed RNA polymerase n=1 Tax=Fibrocapsa jap...	[more]
A0A3R7ERU9_9STRA	2.250e-56	77.87	DNA-directed RNA polymerase subunit beta (Fragment...	[more]
A0A024U2C2_9STRA	6.730e-56	77.87	DNA-directed RNA polymerase subunit beta n=2 Tax=A...	[more]
A0A7S2V714_9STRA	7.720e-56	75.41	DNA-directed RNA polymerase subunit beta n=1 Tax=A...	[more]
W4FT36_9STRA	9.200e-56	77.87	DNA-directed RNA polymerase subunit beta n=9 Tax=A...	[more]
A0A6G0W8Q0_9STRA	1.250e-55	77.05	DNA-directed RNA polymerase subunit beta n=1 Tax=A...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007120	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain	PFAM	PF00562	RNA_pol_Rpb2_6	coord: 1..60 e-value: 9.6E-24 score: 84.2
None	No IPR available	GENE3D	3.90.1800.10		coord: 48..121 e-value: 6.3E-33 score: 115.8
None	No IPR available	PANTHER	PTHR20856:SF5	DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA2	coord: 1..111
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 30..122
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..29
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..11
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 1..109
None	No IPR available	TMHMM	TMhelix		coord: 10..29
IPR007641	RNA polymerase Rpb2, domain 7	PFAM	PF04560	RNA_pol_Rpb2_7	coord: 63..106 e-value: 5.1E-15 score: 55.6
IPR037033	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	GENE3D	2.40.270.10		coord: 1..47 e-value: 1.5E-15 score: 59.3
IPR015712	DNA-directed RNA polymerase, subunit 2	PANTHER	PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	coord: 1..111

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig15451	contig	E-fasciculatus_F_contig15451:105..1270 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig15451.3821.1	mRNA_E-fasciculatus_F_contig15451.3821.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	mRNA	E-fasciculatus_F_contig15451 105..1270 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-fasciculatus_F_contig15451.3821.1 ID=prot_E-fasciculatus_F_contig15451.3821.1|Name=mRNA_E-fasciculatus_F_contig15451.3821.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=122bp
YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQ
LTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVC
SACGSLLSTSARRGAVATAGQS

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR015712	DNA-dir_RNA_pol_su2
IPR037033	DNA-dir_RNAP_su2_hyb_sf
IPR007641	RNA_pol_Rpb2_7
IPR007120	DNA-dir_RNAP_su2_dom