mRNA_E-fasciculatus_F_contig15451.3821.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig15451.3821.1 vs. uniprot
Match: A0A6H5KR08_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR08_9PHAE) HSP 1 Score: 239 bits (609), Expect = 1.120e-77 Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 1
Query: 1 YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCSACGSLLSTSARRGAVATAGQS 366
YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRH+AHVCS CGSLLSTSARRGAVATAGQS
Sbjct: 79 YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHIAHVCSTCGSLLSTSARRGAVATAGQS 200
BLAST of mRNA_E-fasciculatus_F_contig15451.3821.1 vs. uniprot
Match: D8LGZ7_ECTSI (DNA-directed RNA polymerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGZ7_ECTSI) HSP 1 Score: 241 bits (614), Expect = 7.660e-72 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1
Query: 1 YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCSACGSLLSTSARRGAVATAGQS 366
YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCSACGSLLSTSARRGAVATAGQS
Sbjct: 880 YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCSACGSLLSTSARRGAVATAGQS 1001
BLAST of mRNA_E-fasciculatus_F_contig15451.3821.1 vs. uniprot
Match: A0A7S3UTQ0_HETAK (DNA-directed RNA polymerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTQ0_HETAK) HSP 1 Score: 207 bits (528), Expect = 1.010e-62 Identity = 104/122 (85.25%), Postives = 110/122 (90.16%), Query Frame = 1
Query: 1 YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCSACGSLLSTSARRGAVATAGQS 366
YAYHGSEPLYSGV+GTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVN LTRQP+KGRK GG+R GEMERDALLSHGAAFLLHDRLMNCSDRH A VCS CGS+LST R ++ TAGQS
Sbjct: 325 YAYHGSEPLYSGVSGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNPLTRQPVKGRKRHGGIRFGEMERDALLSHGAAFLLHDRLMNCSDRHPALVCSKCGSVLSTVTTRKSILTAGQS 446
BLAST of mRNA_E-fasciculatus_F_contig15451.3821.1 vs. uniprot
Match: A0A835YVF9_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF9_9STRA) HSP 1 Score: 206 bits (524), Expect = 2.790e-59 Identity = 101/122 (82.79%), Postives = 112/122 (91.80%), Query Frame = 1
Query: 1 YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCSACGSLLSTSARRGAVATAGQS 366
YAY+GSEPLYSG++GTVMHADIFIGLVYYQRLRHMVSDKSQVRA+G VN LTRQPIKGRKNKGG+R GEMERD+LLSHGAAFLLHDRLMNCSDRH+AHVC CGS+LS +R AV +AG+S
Sbjct: 994 YAYYGSEPLYSGISGTVMHADIFIGLVYYQRLRHMVSDKSQVRASGAVNPLTRQPIKGRKNKGGIRFGEMERDSLLSHGAAFLLHDRLMNCSDRHLAHVCCTCGSMLSPCHQRSAVTSAGRS 1115
BLAST of mRNA_E-fasciculatus_F_contig15451.3821.1 vs. uniprot
Match: A0A7S2V1Y1_9STRA (DNA-directed RNA polymerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Y1_9STRA) HSP 1 Score: 195 bits (495), Expect = 5.480e-59 Identity = 96/121 (79.34%), Postives = 105/121 (86.78%), Query Frame = 1
Query: 1 YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCSACGSLLSTSARRGAVATAGQ 363
YAY+GSEPLYSG++GTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVN LTRQPIKGRK GG+R GEMERD+LLSHGA+FLLHDRLMNCSDRH +C+ CGSLLS + R V GQ
Sbjct: 210 YAYYGSEPLYSGISGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNPLTRQPIKGRKRHGGIRFGEMERDSLLSHGASFLLHDRLMNCSDRHTGWICADCGSLLSPTTLRNPVEYIGQ 330
BLAST of mRNA_E-fasciculatus_F_contig15451.3821.1 vs. uniprot
Match: A0A3R7ERU9_9STRA (DNA-directed RNA polymerase subunit beta (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7ERU9_9STRA) HSP 1 Score: 196 bits (498), Expect = 2.250e-56 Identity = 95/122 (77.87%), Postives = 109/122 (89.34%), Query Frame = 1
Query: 1 YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCSACGSLLSTSARRGAVATAGQS 366
Y Y GSEPLYSG+TGTVMHADI++G+VYYQRLRHMVSDKSQVRATGP+N LTRQP+KGRK KGG+R GEMERD+LL+HG AFLLHDRLMNCSD+H+A VC+ CGSLLST R +V+ AGQS
Sbjct: 621 YNYMGSEPLYSGLTGTVMHADIYMGVVYYQRLRHMVSDKSQVRATGPMNSLTRQPLKGRKKKGGIRFGEMERDSLLAHGCAFLLHDRLMNCSDKHIATVCTKCGSLLSTWTARASVSEAGQS 742
BLAST of mRNA_E-fasciculatus_F_contig15451.3821.1 vs. uniprot
Match: A0A024U2C2_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024U2C2_9STRA) HSP 1 Score: 196 bits (499), Expect = 6.730e-56 Identity = 95/122 (77.87%), Postives = 109/122 (89.34%), Query Frame = 1
Query: 1 YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCSACGSLLSTSARRGAVATAGQS 366
Y Y GSEPLYSG+TGTVMHADI++G+VYYQRLRHMVSDKSQVRATGP+N LTRQP+KGRK KGG+R GEMERD+LL+HG AFLLHDRLMNCSD+H+A VC+ CGSLLST +R +V AGQS
Sbjct: 993 YNYMGSEPLYSGLTGTVMHADIYMGVVYYQRLRHMVSDKSQVRATGPMNSLTRQPLKGRKKKGGIRFGEMERDSLLAHGCAFLLHDRLMNCSDKHIATVCTKCGSLLSTWTQRASVTDAGQS 1114
BLAST of mRNA_E-fasciculatus_F_contig15451.3821.1 vs. uniprot
Match: A0A7S2V714_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2V714_9STRA) HSP 1 Score: 193 bits (490), Expect = 7.720e-56 Identity = 92/122 (75.41%), Postives = 106/122 (86.89%), Query Frame = 1
Query: 1 YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCSACGSLLSTSARRGAVATAGQS 366
Y Y+GSEPLYSGV+G +MHAD++IG+VYYQRLRHMVSDK QVRATGP NQLTRQPIKGRK GG+RLGEMERD+LLSHGAAFL+HDRL+NCSDRH+A+ C CG LL+ S R + TAGQS
Sbjct: 487 YNYYGSEPLYSGVSGCIMHADLYIGVVYYQRLRHMVSDKYQVRATGPTNQLTRQPIKGRKKGGGIRLGEMERDSLLSHGAAFLMHDRLLNCSDRHIAYACCRCGDLLNPSTERSTLQTAGQS 608
BLAST of mRNA_E-fasciculatus_F_contig15451.3821.1 vs. uniprot
Match: W4FT36_9STRA (DNA-directed RNA polymerase subunit beta n=9 Tax=Aphanomyces TaxID=100860 RepID=W4FT36_9STRA) HSP 1 Score: 196 bits (498), Expect = 9.200e-56 Identity = 95/122 (77.87%), Postives = 109/122 (89.34%), Query Frame = 1
Query: 1 YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCSACGSLLSTSARRGAVATAGQS 366
Y Y GSEPLYSG+TGTVMHADI++G+VYYQRLRHMVSDKSQVRATGP+N LTRQP+KGRK KGG+R GEMERD+LL+HG AFLLHDRLMNCSD+H+A VC+ CGSLLST R +V+ AGQS
Sbjct: 996 YNYMGSEPLYSGLTGTVMHADIYMGVVYYQRLRHMVSDKSQVRATGPMNSLTRQPLKGRKKKGGIRFGEMERDSLLAHGCAFLLHDRLMNCSDKHIATVCTKCGSLLSTWTARASVSEAGQS 1117
BLAST of mRNA_E-fasciculatus_F_contig15451.3821.1 vs. uniprot
Match: A0A6G0W8Q0_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W8Q0_9STRA) HSP 1 Score: 196 bits (497), Expect = 1.250e-55 Identity = 94/122 (77.05%), Postives = 109/122 (89.34%), Query Frame = 1
Query: 1 YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCSACGSLLSTSARRGAVATAGQS 366
Y Y GSEPLYSG+TGTVMHADI++G+VYYQRLRHMVSDKSQVRATGP N LTRQP+KGRK +GG+R GEMERDALL+HG +FLLHDRLMNCSD+H+A VC+ CGSLLST +R +V+ AGQS
Sbjct: 992 YNYMGSEPLYSGLTGTVMHADIYMGVVYYQRLRHMVSDKSQVRATGPTNSLTRQPVKGRKKRGGIRFGEMERDALLAHGTSFLLHDRLMNCSDKHIATVCTKCGSLLSTWTQRASVSDAGQS 1113 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15451.3821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15451.3821.1 >prot_E-fasciculatus_F_contig15451.3821.1 ID=prot_E-fasciculatus_F_contig15451.3821.1|Name=mRNA_E-fasciculatus_F_contig15451.3821.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=122bp YAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQback to top mRNA from alignment at E-fasciculatus_F_contig15451:105..1270- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig15451.3821.1 ID=mRNA_E-fasciculatus_F_contig15451.3821.1|Name=mRNA_E-fasciculatus_F_contig15451.3821.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1166bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15451:105..1270- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15451:105..1270- >mRNA_E-fasciculatus_F_contig15451.3821.1 ID=mRNA_E-fasciculatus_F_contig15451.3821.1|Name=mRNA_E-fasciculatus_F_contig15451.3821.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=732bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15451:105..1270- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |