prot_E-fasciculatus_F_contig12962.2244.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig12962.2244.1
Unique Nameprot_E-fasciculatus_F_contig12962.2244.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length90
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12962.2244.1 vs. uniprot
Match: D7FMC2_ECTSI (Solanesyl diphosphate synthase-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMC2_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 5.840e-21
Identity = 60/72 (83.33%), Postives = 63/72 (87.50%), Query Frame = 0 
Query:    1 MKTATAMRTTACAACCSLAGVGAFLSAPSTTIAVSSSRNNNPHTHTSSWGNSALSSPLSLVGGGGSAHSRAS 72
            MKTATAMRTTACAACC LAGVGAFLSAPST+I   SSRNNNPHT    WGNSALSSPLSLVGGG SA++RAS
Sbjct:    1 MKTATAMRTTACAACCGLAGVGAFLSAPSTSIV--SSRNNNPHT----WGNSALSSPLSLVGGG-SANARAS 65
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12962.2244.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMC2_ECTSI5.840e-2183.33Solanesyl diphosphate synthase-like protein n=2 Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..33
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..90
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 26..33
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..23
score: 0.531

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12962contigE-fasciculatus_F_contig12962:3542..3811 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12962.2244.1mRNA_E-fasciculatus_F_contig12962.2244.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig12962 2512..3811 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig12962.2244.1 ID=prot_E-fasciculatus_F_contig12962.2244.1|Name=mRNA_E-fasciculatus_F_contig12962.2244.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=90bp
MKTATAMRTTACAACCSLAGVGAFLSAPSTTIAVSSSRNNNPHTHTSSWG
NSALSSPLSLVGGGGSAHSRASVCPSPGGEEEGGASRRGA
back to top