mRNA_E-fasciculatus_F_contig12962.2244.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12962.2244.1
Unique NamemRNA_E-fasciculatus_F_contig12962.2244.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12962.2244.1 vs. uniprot
Match: D7FMC2_ECTSI (Solanesyl diphosphate synthase-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMC2_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.040e-16
Identity = 55/72 (76.39%), Postives = 58/72 (80.56%), Query Frame = 2 
Query:  311 MKTATAMRTXXXXXCCSLAGVGAFLSAPSTTIAVSSSRNNNPHTHTSSWGNSALSSPLSLVGGGGSAHSRAS 526
            MKTATAMRT     CC LAGVGAFLSAPST+I   SSRNNNPHT    WGNSALSSPLSLVGGG SA++RAS
Sbjct:    1 MKTATAMRTTACAACCGLAGVGAFLSAPSTSIV--SSRNNNPHT----WGNSALSSPLSLVGGG-SANARAS 65
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12962.2244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMC2_ECTSI1.040e-1676.39Solanesyl diphosphate synthase-like protein n=2 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12962contigE-fasciculatus_F_contig12962:2512..3811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue1e-17
Seed eggNOG ortholog2880.D7FMC2
KEGG rclassRC00279
KEGG koko:K14066
KEGG ReactionR01658
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00366
EggNOG free text desc.isoprenoid biosynthetic process
EggNOG OGsCOG0142@1,KOG0776@2759
EC2.5.1.1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01006
Hectar predicted targeting categorychloroplast
Exons2
Model size582
Cds size270
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12962.2244.1prot_E-fasciculatus_F_contig12962.2244.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12962 3542..3811 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927800.7783287-UTR-E-fasciculatus_F_contig12962:2511..25981622927800.7783287-UTR-E-fasciculatus_F_contig12962:2511..2598Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12962 2512..2598 +
1695995700.3262944-UTR-E-fasciculatus_F_contig12962:2511..25981695995700.3262944-UTR-E-fasciculatus_F_contig12962:2511..2598Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12962 2512..2598 +
1622927800.7999237-UTR-E-fasciculatus_F_contig12962:3318..35411622927800.7999237-UTR-E-fasciculatus_F_contig12962:3318..3541Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12962 3319..3541 +
1695995700.340738-UTR-E-fasciculatus_F_contig12962:3318..35411695995700.340738-UTR-E-fasciculatus_F_contig12962:3318..3541Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12962 3319..3541 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927800.819573-CDS-E-fasciculatus_F_contig12962:3541..38111622927800.819573-CDS-E-fasciculatus_F_contig12962:3541..3811Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12962 3542..3811 +
1695995700.3557591-CDS-E-fasciculatus_F_contig12962:3541..38111695995700.3557591-CDS-E-fasciculatus_F_contig12962:3541..3811Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12962 3542..3811 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12962.2244.1

>prot_E-fasciculatus_F_contig12962.2244.1 ID=prot_E-fasciculatus_F_contig12962.2244.1|Name=mRNA_E-fasciculatus_F_contig12962.2244.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=90bp
MKTATAMRTTACAACCSLAGVGAFLSAPSTTIAVSSSRNNNPHTHTSSWG
NSALSSPLSLVGGGGSAHSRASVCPSPGGEEEGGASRRGA
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mRNA from alignment at E-fasciculatus_F_contig12962:2512..3811+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12962.2244.1 ID=mRNA_E-fasciculatus_F_contig12962.2244.1|Name=mRNA_E-fasciculatus_F_contig12962.2244.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1300bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12962:2512..3811+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAGCACGGTACACTCCGAGAAGCTGACCACGGCCTGCACTCGAGAACAC
ACCACCCCGAGCTTTCACACCGGATTCAGGACCAAAGGTGAGGTCCGTGT
GCGCTTGTGGATCTGTGTTGGGGCGATTAGGCAGGATTTTCGCTCGCAGC
CCCTTCTCAAAACACGTCGATTTCCTGGCCAGCGCCGGTGGCACACTACA
TATCAGGAGAGACTCAATCTCGATTTGCTGCTGCTGTCGTGACTACGCGA
CTTCGCGTTCGGAAGGCGTCCTTGCCATCACATGGATGGAACATTTAGTC
CATGGTCGCTCAGTCGCCGCTAGTTGGACGCGGTTGATCTGGGGCGAGAC
AGCACCACTACATGCTATTCTTGCGGCGTGCGTGGCTCTCTCTCTCATCA
ATCAATGCGAACGCCGCGTGTGCACGTTCCACATTAGCAGCAGCGGTTCA
ACCCATCTGATTGCTTCCCCGAGAGCGACTGCCACGCACTGACGAACAGC
CGAGATTCATCGTCTCTACAGGTGCTCTCATGGTCCCCCGGTTTTCCCTC
TGCCAAAGGACGGCAGCTGGATTGCAAAACTTGTCGCGTGGAGTCAGCAG
CAGTAGGCAGCGTCATTCCCCCGCCGCTACATTCCTCCACGCCGAGCTGA
CAGACCTTCGCCGTATAAATGTAGTTCCTCTGAACCAGCTGCCCTTACAC
CCTGCTGGCATCTGGCCGAGTCAGAGGTGCATCCCCCGACAACCAAAGAT
CCCGCCTGCACTCGTACGATGCTCACCGCGCCTCCGACCCTCATGCGCCT
GCTGCAGGCACCCACGACAACTCCACGCAGCAGGAATAAGCCATCGCAAG
CATACATCAACACGGAACGTCCGAGGCCGTCGTCGTCACACACTAATTAA
TTAAAATATCCAGACAAGTGCAGGCAGCAAAGTTTCGTCGCGGATTCAAA
AACACCACACAGGAGGAGGAGGAGGAGGGCAAGCCCGACGCTTCAGCACG
CAGCAGCAGCAACAGCAACACAAAGGAAGGATGAAAACAGCAACAGCGAT
GCGCACGACGGCGTGCGCGGCGTGCTGCAGCCTCGCGGGCGTCGGAGCGT
TCCTGTCGGCCCCGTCCACCACCATCGCCGTCTCCTCGTCGCGAAACAAC
AACCCCCACACTCACACGTCGTCGTGGGGAAACTCCGCATTATCGTCCCC
GCTGAGCTTAGTCGGGGGAGGAGGCTCGGCACACTCGCGCGCGTCGGTGT
GTCCATCACCGGGGGGCGAGGAGGAGGGGGGGGCGAGTCGACGGGGCGCT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12962:2512..3811+

>mRNA_E-fasciculatus_F_contig12962.2244.1 ID=mRNA_E-fasciculatus_F_contig12962.2244.1|Name=mRNA_E-fasciculatus_F_contig12962.2244.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=540bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12962:2512..3811+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAAACAGCAACAGCGATGCGCACGACGGCGTGCGCGGCGTGCTGCAG
CCTCGCGGGCGTCGGAGCGTTCCTGTCGGCCCCGTCCACCACCATCGCCG
TCTCCTCGTCGCGAAACAACAACCCCCACACTCACACGTCGTCGTGGGGA
AACTCCGCATTATCGTCCCCGCTGAGCTTAGTCGGGGGAGGAGGCTCGGC
ACACTCGCGCGCGTCGGTGTGTCCATCACCGGGGGGCGAGGAGGAGGGGG
GGGCGAGTCGACGGGGCGCTATGAAAACAGCAACAGCGATGCGCACGACG
GCGTGCGCGGCGTGCTGCAGCCTCGCGGGCGTCGGAGCGTTCCTGTCGGC
CCCGTCCACCACCATCGCCGTCTCCTCGTCGCGAAACAACAACCCCCACA
CTCACACGTCGTCGTGGGGAAACTCCGCATTATCGTCCCCGCTGAGCTTA
GTCGGGGGAGGAGGCTCGGCACACTCGCGCGCGTCGGTGTGTCCATCACC
GGGGGGCGAGGAGGAGGGGGGGGCGAGTCGACGGGGCGCT
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