prot_E-fasciculatus_F_contig12962.2243.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig12962.2243.1
Unique Nameprot_E-fasciculatus_F_contig12962.2243.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length180
Homology
BLAST of mRNA_E-fasciculatus_F_contig12962.2243.1 vs. uniprot
Match: A0A6H5L3V5_9PHAE (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L3V5_9PHAE)

HSP 1 Score: 322 bits (824), Expect = 2.810e-106
Identity = 162/180 (90.00%), Postives = 167/180 (92.78%), Query Frame = 0
Query:    1 MPATGLGQQQQQQHHVCGNANAVAFVPPGSMMASMMRRSPIRCQALADTVMAQRGLSMTSREVAASRQCGDIPTETLSLDDDFVVINKPADVRMDGNFDVAVDKLIRHWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRREGEPEGW 180
            MP+TGLGQQQ        N NAVA V  GSMMAS+MRRSPIRCQALADTVMAQRGLSMTSRE+AASRQCGDIPTETLSLDDDFVVINKPADVRMDGNFDVAVDKLIR+WCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRRE EP+GW
Sbjct:    1 MPSTGLGQQQXXXXFCGNNVNAVALVSSGSMMASLMRRSPIRCQALADTVMAQRGLSMTSRELAASRQCGDIPTETLSLDDDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRREEEPDGW 180          
BLAST of mRNA_E-fasciculatus_F_contig12962.2243.1 vs. uniprot
Match: A0A7S3H910_9STRA (Hypothetical protein (Fragment) n=3 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H910_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.000e-24
Identity = 52/101 (51.49%), Postives = 69/101 (68.32%), Query Frame = 0
Query:   77 LSLDDDFVVINKPADVRMDGNFDVAVDKLIRHWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRREGEP 177
            L LD ++ V++KP  VRM G+F + ++KL+ HW P ++   LKW+HQLDFATSGVLCV L+R AAA    AF  R  KK YLAV+QG V+ +  P  E +P
Sbjct:   49 LYLDTNYCVVDKPHKVRMTGDFSITMEKLLLHWIPGIQIGSLKWIHQLDFATSGVLCVGLNRAAAAVASAAFEARTVKKQYLAVLQGHVNLDDWPILEAKP 149          
BLAST of mRNA_E-fasciculatus_F_contig12962.2243.1 vs. uniprot
Match: A0A482SV00_9ARCH (PseudoU_synth_2 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SV00_9ARCH)

HSP 1 Score: 100 bits (249), Expect = 3.770e-22
Identity = 56/119 (47.06%), Postives = 70/119 (58.82%), Query Frame = 0
Query:   65 ASRQCGDIPTETLSLDDDFVVINKPADVRMDGNFDVAVDKLI-----RHWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRREGEPE 178
            A     D+    L+ +  F VI+KPADVRMDGNFDV V+KL+     +        K+ KWVHQLDFATSG LCVAL RE AA     F  R  +K YL+V+ G +D +    RE EP+
Sbjct:   18 APADINDVQLNILAENKHFYVIDKPADVRMDGNFDVTVEKLLLLHIKKPDGSATTPKDFKWVHQLDFATSGALCVALTREGAAAASSCFEHREVEKHYLSVLSGTLDLDKYCYREYEPD 136          
BLAST of mRNA_E-fasciculatus_F_contig12962.2243.1 vs. uniprot
Match: W2Q6J3_PHYPN (PseudoU_synth_2 domain-containing protein n=16 Tax=Phytophthora TaxID=4783 RepID=W2Q6J3_PHYPN)

HSP 1 Score: 97.1 bits (240), Expect = 3.010e-20
Identity = 52/105 (49.52%), Postives = 68/105 (64.76%), Query Frame = 0
Query:   77 LSLDDDFVVINKPADVRMDGNFDVAVDKLIRHWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQG--------AVDPESVPRR 173
            LS D+ FVV+NK  D RMDG FDV ++K +    P +E  + +W+HQLDFATSGVL V  ++EA A GC  FRE++ +K YLAVVQG        +VD   VP +
Sbjct:   98 LSKDEHFVVLNKGPDERMDGAFDVTLEKALARDFPQVE--KFRWIHQLDFATSGVLVVGANKEATATGCRLFREKQVQKEYLAVVQGHLPFNPADSVDTAGVPAK 200          
BLAST of mRNA_E-fasciculatus_F_contig12962.2243.1 vs. uniprot
Match: G4ZW01_PHYSP (Pseudouridine synthase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZW01_PHYSP)

HSP 1 Score: 93.6 bits (231), Expect = 3.370e-19
Identity = 51/115 (44.35%), Postives = 68/115 (59.13%), Query Frame = 0
Query:   67 RQCGDIPTETLSLDDDFVVINKPADVRMDGNFDVAVDKLIRHWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQG--------AVDPESVPRR 173
            R    +    LS D+ FVV+NK  D RMDG FDV ++K +    P +   + +W+HQLDFATSGVL V   +EA A GC  FRE++ +K YLAVV+G        +VD   VP +
Sbjct:   88 RTLDQLQLRVLSKDEHFVVLNKGPDERMDGEFDVTLEKALARDFPDVP--KFRWIHQLDFATSGVLVVGATKEATATGCRLFREKQVQKEYLAVVRGHLPFNPADSVDRSGVPAK 200          
BLAST of mRNA_E-fasciculatus_F_contig12962.2243.1 vs. uniprot
Match: A0A7S3EEX3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EEX3_9RHOD)

HSP 1 Score: 91.3 bits (225), Expect = 4.990e-19
Identity = 48/98 (48.98%), Postives = 67/98 (68.37%), Query Frame = 0
Query:   75 ETLSLDDDFVVINKPADVRMDGNFDVAVDKLIRHWCPTLE---DKE--LKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDP 167
            + +  D+ +VV+NKPADVRMDG FDV V+KL+R      +   +KE  +++VHQLD+ATSGVL +AL R +AA  C+ F  R  +K YLA+V G + P
Sbjct:   34 DVIYEDEGYVVVNKPADVRMDGEFDVTVEKLVRAHLTKKDATWEKEGKIRFVHQLDYATSGVLLLALTRRSAAFTCKQFERRTVQKKYLALVYGTIPP 131          
BLAST of mRNA_E-fasciculatus_F_contig12962.2243.1 vs. uniprot
Match: A0A329SUS2_9STRA (PseudoU_synth_2 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SUS2_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 8.130e-19
Identity = 49/105 (46.67%), Postives = 68/105 (64.76%), Query Frame = 0
Query:   77 LSLDDDFVVINKPADVRMDGNFDVAVDKLIRHWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQG--------AVDPESVPRR 173
            LS D+ FVV+ K  D RMDG FDV ++K +    P ++  + +W+HQLDFATSGVL V  ++EA A GC  FRE++ +K YLAVV+G        +VD + VP +
Sbjct:   47 LSRDEHFVVLYKGPDERMDGAFDVTLEKALARDFPQVD--KFRWIHQLDFATSGVLAVGANKEATATGCRLFREKQVQKEYLAVVRGHLPFNPAESVDSDGVPAK 149          
BLAST of mRNA_E-fasciculatus_F_contig12962.2243.1 vs. uniprot
Match: A0A0P1AWK8_PLAHL (Rna pseudouridylate synthase-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWK8_PLAHL)

HSP 1 Score: 92.0 bits (227), Expect = 1.230e-18
Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = 0
Query:   71 DIPTETLSLDDDFVVINKPADVRMDGNFDVAVDKLIRHWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQG 163
            D+    LS + +FVV+NK  D R+DG FDV ++K +    P ++  + +W+HQLDFATSGVL V +++EA A GC  FRE++ +K YLAV++G
Sbjct:   36 DLQLHILSKNKNFVVLNKGPDERLDGAFDVTLEKALTRDFPHVD--KFRWIHQLDFATSGVLVVGVNKEATATGCRLFREKQVQKEYLAVIRG 126          
BLAST of mRNA_E-fasciculatus_F_contig12962.2243.1 vs. uniprot
Match: A0A225VLR7_9STRA (Pseudouridine synthase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VLR7_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.150e-18
Identity = 46/86 (53.49%), Postives = 60/86 (69.77%), Query Frame = 0
Query:   77 LSLDDDFVVINKPADVRMDGNFDVAVDKLIRHWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQ 162
            LS D+ FVV+NK  D RMDG FDV ++K +    P +E  + +W+HQLDFATSGVL V   +EA A GC  FRE++ +K YLAVV+
Sbjct:  110 LSKDEHFVVLNKGPDERMDGAFDVTLEKALARDFPEIE--KFRWIHQLDFATSGVLVVGATKEATATGCRLFREKQVQKEYLAVVR 193          
BLAST of mRNA_E-fasciculatus_F_contig12962.2243.1 vs. uniprot
Match: A0A024GNA9_9STRA (HMG box domain-containing protein n=4 Tax=Albugo candida TaxID=65357 RepID=A0A024GNA9_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.220e-18
Identity = 46/103 (44.66%), Postives = 64/103 (62.14%), Query Frame = 0
Query:   66 SRQCGDIPTETLSLD-----DDFVVINKPADVRMDGNFDVAVDKLIRHWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQG 163
            SR+ G      L LD      + +V+NK  D R+DGNFD  ++K +    P +   + +W+HQLDFATSGVLCV + +EA + GC  FRER+ +K YLA+V G
Sbjct:   54 SRRGGPSDLNALELDVIRKTKNLIVLNKGYDQRLDGNFDATIEKALHRDYPDIP--KFRWIHQLDFATSGVLCVGITKEATSLGCRLFRERKVQKEYLAIVSG 154          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12962.2243.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3V5_9PHAE2.810e-10690.00PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A7S3H910_9STRA1.000e-2451.49Hypothetical protein (Fragment) n=3 Tax=Spumella e... [more]
A0A482SV00_9ARCH3.770e-2247.06PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
W2Q6J3_PHYPN3.010e-2049.52PseudoU_synth_2 domain-containing protein n=16 Tax... [more]
G4ZW01_PHYSP3.370e-1944.35Pseudouridine synthase n=1 Tax=Phytophthora sojae ... [more]
A0A7S3EEX3_9RHOD4.990e-1948.98Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A329SUS2_9STRA8.130e-1946.67PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A0P1AWK8_PLAHL1.230e-1847.31Rna pseudouridylate synthase-like protein n=1 Tax=... [more]
A0A225VLR7_9STRA2.150e-1853.49Pseudouridine synthase n=1 Tax=Phytophthora megaka... [more]
A0A024GNA9_9STRA2.220e-1844.66HMG box domain-containing protein n=4 Tax=Albugo c... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006145Pseudouridine synthase, RsuA/RluAPFAMPF00849PseudoU_synth_2coord: 82..165
e-value: 7.7E-17
score: 61.8
NoneNo IPR availableGENE3D3.30.2350.10coord: 65..176
e-value: 1.1E-19
score: 72.8
NoneNo IPR availablePANTHERPTHR21600RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 62..167
NoneNo IPR availablePANTHERPTHR21600:SF41RNA PSEUDOURIDYLATE SYNTHASE DOMAIN-CONTAINING PROTEIN 1coord: 62..167
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 72..168

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12962contigE-fasciculatus_F_contig12962:33..2131 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12962.2243.1mRNA_E-fasciculatus_F_contig12962.2243.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig12962 33..2317 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig12962.2243.1 ID=prot_E-fasciculatus_F_contig12962.2243.1|Name=mRNA_E-fasciculatus_F_contig12962.2243.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=180bp
MPATGLGQQQQQQHHVCGNANAVAFVPPGSMMASMMRRSPIRCQALADTV
MAQRGLSMTSREVAASRQCGDIPTETLSLDDDFVVINKPADVRMDGNFDV
AVDKLIRHWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRE
RRAKKSYLAVVQGAVDPESVPRREGEPEGW
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom_sf
IPR006145PsdUridine_synth_RsuA/RluA