mRNA_E-fasciculatus_F_contig12962.2243.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12962.2243.1
Unique NamemRNA_E-fasciculatus_F_contig12962.2243.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12962.2243.1 vs. uniprot
Match: A0A6H5L3V5_9PHAE (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L3V5_9PHAE)

HSP 1 Score: 321 bits (822), Expect = 6.550e-105
Identity = 164/180 (91.11%), Postives = 169/180 (93.89%), Query Frame = 1 
Query:  187 MPATGLGQQXXXXHHVCGNANAVAFVPPGSMMASMMRRSPIRCQALADTVMAQRGLSMTSREVAASRQCGDIPTETLSLDDDFVVINKPADVRMDGNFDVAVDKLIRHWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRREGEPEGW 726
            MP+TGLGQQ XXX     N NAVA V  GSMMAS+MRRSPIRCQALADTVMAQRGLSMTSRE+AASRQCGDIPTETLSLDDDFVVINKPADVRMDGNFDVAVDKLIR+WCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRRE EP+GW
Sbjct:    1 MPSTGLGQQQXXXXFCGNNVNAVALVSSGSMMASLMRRSPIRCQALADTVMAQRGLSMTSRELAASRQCGDIPTETLSLDDDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRREEEPDGW 180
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12962.2243.1 vs. uniprot
Match: A0A7S3H910_9STRA (Hypothetical protein (Fragment) n=3 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H910_9STRA)

HSP 1 Score: 106 bits (264), Expect = 6.020e-24
Identity = 52/101 (51.49%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:  415 LSLDDDFVVINKPADVRMDGNFDVAVDKLIRHWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRREGEP 717
            L LD ++ V++KP  VRM G+F + ++KL+ HW P ++   LKW+HQLDFATSGVLCV L+R AAA    AF  R  KK YLAV+QG V+ +  P  E +P
Sbjct:   49 LYLDTNYCVVDKPHKVRMTGDFSITMEKLLLHWIPGIQIGSLKWIHQLDFATSGVLCVGLNRAAAAVASAAFEARTVKKQYLAVLQGHVNLDDWPILEAKP 149
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12962.2243.1 vs. uniprot
Match: A0A482SV00_9ARCH (PseudoU_synth_2 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SV00_9ARCH)

HSP 1 Score: 100 bits (249), Expect = 2.140e-21
Identity = 56/119 (47.06%), Postives = 70/119 (58.82%), Query Frame = 1 
Query:  379 ASRQCGDIPTETLSLDDDFVVINKPADVRMDGNFDVAVDKLI-----RHWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRREGEPE 720
            A     D+    L+ +  F VI+KPADVRMDGNFDV V+KL+     +        K+ KWVHQLDFATSG LCVAL RE AA     F  R  +K YL+V+ G +D +    RE EP+
Sbjct:   18 APADINDVQLNILAENKHFYVIDKPADVRMDGNFDVTVEKLLLLHIKKPDGSATTPKDFKWVHQLDFATSGALCVALTREGAAAASSCFEHREVEKHYLSVLSGTLDLDKYCYREYEPD 136
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12962.2243.1 vs. uniprot
Match: W2Q6J3_PHYPN (PseudoU_synth_2 domain-containing protein n=16 Tax=Phytophthora TaxID=4783 RepID=W2Q6J3_PHYPN)

HSP 1 Score: 97.1 bits (240), Expect = 1.690e-19
Identity = 52/105 (49.52%), Postives = 68/105 (64.76%), Query Frame = 1 
Query:  415 LSLDDDFVVINKPADVRMDGNFDVAVDKLIRHWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQG--------AVDPESVPRR 705
            LS D+ FVV+NK  D RMDG FDV ++K +    P +E  + +W+HQLDFATSGVL V  ++EA A GC  FRE++ +K YLAVVQG        +VD   VP +
Sbjct:   98 LSKDEHFVVLNKGPDERMDGAFDVTLEKALARDFPQVE--KFRWIHQLDFATSGVLVVGANKEATATGCRLFREKQVQKEYLAVVQGHLPFNPADSVDTAGVPAK 200
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12962.2243.1 vs. uniprot
Match: G4ZW01_PHYSP (Pseudouridine synthase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZW01_PHYSP)

HSP 1 Score: 93.6 bits (231), Expect = 1.800e-18
Identity = 51/115 (44.35%), Postives = 68/115 (59.13%), Query Frame = 1 
Query:  385 RQCGDIPTETLSLDDDFVVINKPADVRMDGNFDVAVDKLIRHWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQG--------AVDPESVPRR 705
            R    +    LS D+ FVV+NK  D RMDG FDV ++K +    P +   + +W+HQLDFATSGVL V   +EA A GC  FRE++ +K YLAVV+G        +VD   VP +
Sbjct:   88 RTLDQLQLRVLSKDEHFVVLNKGPDERMDGEFDVTLEKALARDFPDVP--KFRWIHQLDFATSGVLVVGATKEATATGCRLFREKQVQKEYLAVVRGHLPFNPADSVDRSGVPAK 200
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12962.2243.1 vs. uniprot
Match: A0A7S3EEX3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EEX3_9RHOD)

HSP 1 Score: 91.3 bits (225), Expect = 2.550e-18
Identity = 48/98 (48.98%), Postives = 67/98 (68.37%), Query Frame = 1 
Query:  409 ETLSLDDDFVVINKPADVRMDGNFDVAVDKLIRHWCPTLE---DKE--LKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDP 687
            + +  D+ +VV+NKPADVRMDG FDV V+KL+R      +   +KE  +++VHQLD+ATSGVL +AL R +AA  C+ F  R  +K YLA+V G + P
Sbjct:   34 DVIYEDEGYVVVNKPADVRMDGEFDVTVEKLVRAHLTKKDATWEKEGKIRFVHQLDYATSGVLLLALTRRSAAFTCKQFERRTVQKKYLALVYGTIPP 131
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12962.2243.1 vs. uniprot
Match: A0A329SUS2_9STRA (PseudoU_synth_2 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SUS2_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 4.340e-18
Identity = 49/105 (46.67%), Postives = 68/105 (64.76%), Query Frame = 1 
Query:  415 LSLDDDFVVINKPADVRMDGNFDVAVDKLIRHWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQG--------AVDPESVPRR 705
            LS D+ FVV+ K  D RMDG FDV ++K +    P ++  + +W+HQLDFATSGVL V  ++EA A GC  FRE++ +K YLAVV+G        +VD + VP +
Sbjct:   47 LSRDEHFVVLYKGPDERMDGAFDVTLEKALARDFPQVD--KFRWIHQLDFATSGVLAVGANKEATATGCRLFREKQVQKEYLAVVRGHLPFNPAESVDSDGVPAK 149
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12962.2243.1 vs. uniprot
Match: A0A0P1AWK8_PLAHL (Rna pseudouridylate synthase-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWK8_PLAHL)

HSP 1 Score: 92.0 bits (227), Expect = 6.460e-18
Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = 1 
Query:  397 DIPTETLSLDDDFVVINKPADVRMDGNFDVAVDKLIRHWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQG 675
            D+    LS + +FVV+NK  D R+DG FDV ++K +    P ++  + +W+HQLDFATSGVL V +++EA A GC  FRE++ +K YLAV++G
Sbjct:   36 DLQLHILSKNKNFVVLNKGPDERLDGAFDVTLEKALTRDFPHVD--KFRWIHQLDFATSGVLVVGVNKEATATGCRLFREKQVQKEYLAVIRG 126
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12962.2243.1 vs. uniprot
Match: A0A225VLR7_9STRA (Pseudouridine synthase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VLR7_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.130e-17
Identity = 46/86 (53.49%), Postives = 60/86 (69.77%), Query Frame = 1 
Query:  415 LSLDDDFVVINKPADVRMDGNFDVAVDKLIRHWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQ 672
            LS D+ FVV+NK  D RMDG FDV ++K +    P +E  + +W+HQLDFATSGVL V   +EA A GC  FRE++ +K YLAVV+
Sbjct:  110 LSKDEHFVVLNKGPDERMDGAFDVTLEKALARDFPEIE--KFRWIHQLDFATSGVLVVGATKEATATGCRLFREKQVQKEYLAVVR 193
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12962.2243.1 vs. uniprot
Match: A0A024GNA9_9STRA (HMG box domain-containing protein n=4 Tax=Albugo candida TaxID=65357 RepID=A0A024GNA9_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.180e-17
Identity = 46/103 (44.66%), Postives = 64/103 (62.14%), Query Frame = 1 
Query:  382 SRQCGDIPTETLSLD-----DDFVVINKPADVRMDGNFDVAVDKLIRHWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQG 675
            SR+ G      L LD      + +V+NK  D R+DGNFD  ++K +    P +   + +W+HQLDFATSGVLCV + +EA + GC  FRER+ +K YLA+V G
Sbjct:   54 SRRGGPSDLNALELDVIRKTKNLIVLNKGYDQRLDGNFDATIEKALHRDYPDIP--KFRWIHQLDFATSGVLCVGITKEATSLGCRLFRERKVQKEYLAIVSG 154
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12962.2243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3V5_9PHAE6.550e-10591.11PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A7S3H910_9STRA6.020e-2451.49Hypothetical protein (Fragment) n=3 Tax=Spumella e... [more]
A0A482SV00_9ARCH2.140e-2147.06PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
W2Q6J3_PHYPN1.690e-1949.52PseudoU_synth_2 domain-containing protein n=16 Tax... [more]
G4ZW01_PHYSP1.800e-1844.35Pseudouridine synthase n=1 Tax=Phytophthora sojae ... [more]
A0A7S3EEX3_9RHOD2.550e-1848.98Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A329SUS2_9STRA4.340e-1846.67PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A0P1AWK8_PLAHL6.460e-1847.31Rna pseudouridylate synthase-like protein n=1 Tax=... [more]
A0A225VLR7_9STRA1.130e-1753.49Pseudouridine synthase n=1 Tax=Phytophthora megaka... [more]
A0A024GNA9_9STRA1.180e-1744.66HMG box domain-containing protein n=4 Tax=Albugo c... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12962contigE-fasciculatus_F_contig12962:33..2317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue5.4e-18
Seed eggNOG ortholog4787.PITG_13146T0
Preferred nameRPUSD1
GOsGO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360
EggNOG free text desc.RNA pseudouridylate synthase
EggNOG OGs3QEVP@4776,COG0564@1,KOG1919@2759
COG Functional cat.A
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA pseudouridylate synthase domain containing 1
Ec32 orthologEc-17_003530.1
Exons3
Model size726
Cds size540
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12962.2243.1prot_E-fasciculatus_F_contig12962.2243.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12962 33..2131 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927800.6469493-CDS-E-fasciculatus_F_contig12962:32..1931622927800.6469493-CDS-E-fasciculatus_F_contig12962:32..193Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12962 33..193 -
1695995700.2553449-CDS-E-fasciculatus_F_contig12962:32..1931695995700.2553449-CDS-E-fasciculatus_F_contig12962:32..193Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12962 33..193 -
1622927800.670791-CDS-E-fasciculatus_F_contig12962:660..7751622927800.670791-CDS-E-fasciculatus_F_contig12962:660..775Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12962 661..775 -
1695995700.2659504-CDS-E-fasciculatus_F_contig12962:660..7751695995700.2659504-CDS-E-fasciculatus_F_contig12962:660..775Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12962 661..775 -
1622927800.697998-CDS-E-fasciculatus_F_contig12962:1867..21311622927800.697998-CDS-E-fasciculatus_F_contig12962:1867..2131Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12962 1868..2131 -
1695995700.2754228-CDS-E-fasciculatus_F_contig12962:1867..21311695995700.2754228-CDS-E-fasciculatus_F_contig12962:1867..2131Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12962 1868..2131 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927800.7175822-UTR-E-fasciculatus_F_contig12962:2131..23171622927800.7175822-UTR-E-fasciculatus_F_contig12962:2131..2317Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12962 2132..2317 -
1695995700.3120065-UTR-E-fasciculatus_F_contig12962:2131..23171695995700.3120065-UTR-E-fasciculatus_F_contig12962:2131..2317Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12962 2132..2317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12962.2243.1

>prot_E-fasciculatus_F_contig12962.2243.1 ID=prot_E-fasciculatus_F_contig12962.2243.1|Name=mRNA_E-fasciculatus_F_contig12962.2243.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=180bp
MPATGLGQQQQQQHHVCGNANAVAFVPPGSMMASMMRRSPIRCQALADTV
MAQRGLSMTSREVAASRQCGDIPTETLSLDDDFVVINKPADVRMDGNFDV
AVDKLIRHWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRE
RRAKKSYLAVVQGAVDPESVPRREGEPEGW
back to top

mRNA from alignment at E-fasciculatus_F_contig12962:33..2317-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12962.2243.1 ID=mRNA_E-fasciculatus_F_contig12962.2243.1|Name=mRNA_E-fasciculatus_F_contig12962.2243.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2285bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12962:33..2317- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACAGCCTTGAGAGAGCTGTCAACCTTACGCTCTAGCAGGCCTCTTAGAG
AAGTGAAGTGCCGACCTCTACTGCGTGATACTCAAGGGCGTCGTTCTCTG
TGTGCTGCACCAGGGGTAAAGAGGGGAGGAAAGCTGTCTCGCGCAGGGGT
ATACTTTAGGCACAGCACAGCTGCTGCTGTAGCTGCATGCCAGCAACGGG
CTTGGGACAGCAGCAGCAGCAGCAGCATCACGTCTGCGGCAACGCGAACG
CAGTCGCCTTCGTCCCTCCCGGCTCGATGATGGCGAGTATGATGCGGCGG
TCTCCCATCCGCTGCCAAGCTCTGGCAGACACGGTGATGGCTCAGAGAGG
CCTGTCGATGACGTCGAGAGAGGTAGCGGCATCGCGGCAGTGCGGAGACA
TCCCGACGGAGACGCTGTCGCTGGACGACGACTTCGTGGTGATCAACAAG
GTTAGCATTAGCACGACGGCGCAAGCCATCCTCACCGTATCGCGATTGTT
CGTTTCATGCCGTACTTTGTGGTGTGCATTTCAAATCCCATCTCTGAACA
ATACAAACTTAGAGGCAGTGTGAGTCTTGTTGGCACCCGTTGTGCGCGAT
CCTCAGACCCTCCCCCCGCCTGCTGCCTGGGTGGTCGACACGACCGGTAT
CCTTCCAACGACGCTGCTGTGGCGCTGCTGTCTCTCTTGCGCAGCAGGTA
CGCCTGCATCGCTCTCTGCGTGGGGCCCACACGAACGACTCGTCTAGAGA
ACGTGTACATGCCATTTGTCGTTGTTGCAGTACGGCAGCAGTATTGCGCC
GCACATGGTTGGGTGGTGTCCAATCGACCCTCTTGCTTCTAAACTTGGTC
TACAAATACGTTGTATCGAGACCCATTACAATGTCGAATATGCTCGCTTC
GCAGTACTTGTAGGGCGAACCTACCGAACCGCGGTCCTGGTCGGGTCACC
CTACTGTACACATCAGAAACGCTGCTGCAATATGGAGAGGGGAAGGCTTC
CACACAACAGCAGTAGAAGGTGGTACAATATGCCGGTCCTTGTTTCTTGT
GTGGGCATGGCGTGGTGGACGACTACATACTGAAGTCGGCGTGCCCGCAC
CAAAGGAACGTGTTGTTTGCCACCAACAACGCTTTCTTTCCCGTTTCTCT
TCTAGTTTTGTTCACGGCGTGTTCACAAATCGCCTGCTATTGTCGTCACC
TAGAAAACTCGCGACTGGGGTCCTAACAGCAGTTGTACTATAGATTGTCC
CTGCCACTGGCCGGAAACCCGTTTTGTGGGCACGACGTTGATGGCCTTGA
TCCCGCGGAACGACCCGCGTCATAGGCGGGACAAGGACCACGGAAAACGT
TCCACTACTGCTGTAGAAAAAGCGTGTCCATCAAATTGCCAGTTTGTTGA
ACAACCTTCAGTGCATGGTGACTCAGCATGCCCGCAGAAAAGCAGAGATG
GGTAGTATACGGCGGCATCTATGTCTATCTCCTCAGAATCGTCCACCTTC
CTTCCCTTGCGCTTCTGCGCCTTCTTGCATCGCGCGCCGCAGCCGGCGGA
CGTGCGTATGGATGGGAACTTCGACGTAGCCGTGGACAAGCTGATCAGGC
ACTGGTGCCCAACCCTGGAAGACAAGGAGCTTAAGTGGGTGCACCAGTTG
GACTTCGGTGGGTGGTCCCCCCCCCCCCCCCTCTGCGTGATCTCGAGGAC
GCGTGGTCAATGGTCTAACCGCCAAGGCATTCAAAATGTAGTACGCCCCA
TCTGCATGATCAACCGCCGTAGTATGTCGTCGTGCCGATTCCACAAGGTG
ACACGCGTAGATACTACCTTTTTTTTTGCGTCTTGTATAAATCCCAACCC
TAGGTGCTAATTTTTATTTGCGCCTTGTATTTTGTTGTTGTTAGCATGCG
GGCGTGTGATGCTTGTCCTCGCACCCGGTTCAGGATCTGCCCTCAGAACA
CGCTGCTGCTTGTCAAAAAAGAGTTCCCGCGCGCATAACCCCAGCTGTGC
CAAGCACCCTCCGCCCATCCACCCGCTCTCGCCTGCCATTTTGTTCACCC
CTCACCCTCTCCCCCCCGCTACGCTGCCCCTTCACCCACCCACCCCCCCG
CGCGCGCCCGGTCTGCGTGCACAGCGACATCAGGGGTGTTGTGCGTCGCG
CTCCACCGAGAAGCGGCGGCACGTGGCTGCGAGGCGTTCCGAGAGCGCCG
GGCGAAAAAGTCGTACCTCGCGGTGGTCCAGGGAGCGGTCGACCCGGAAT
CTGTCCCACGGCGGGAGGGGGAGCCGGAGGGGTGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12962:33..2317-

>mRNA_E-fasciculatus_F_contig12962.2243.1 ID=mRNA_E-fasciculatus_F_contig12962.2243.1|Name=mRNA_E-fasciculatus_F_contig12962.2243.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1080bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12962:33..2317- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCAGCAACGGGCTTGGGACAGCAGCAGCAGCAGCAGCATCACGTCTG
CGGCAACGCGAACGCAGTCGCCTTCGTCCCTCCCGGCTCGATGATGGCGA
GTATGATGCGGCGGTCTCCCATCCGCTGCCAAGCTCTGGCAGACACGGTG
ATGGCTCAGAGAGGCCTGTCGATGACGTCGAGAGAGGTAGCGGCATCGCG
GCAGTGCGGAGACATCCCGACGGAGACGCTGTCGCTGGACGACGACTTCG
TGGTGATCAACAAGATGCCAGCAACGGGCTTGGGACAGCAGCAGCAGCAG
CAGCATCACGTCTGCGGCAACGCGAACGCAGTCGCCTTCGTCCCTCCCGG
CTCGATGATGGCGAGTATGATGCGGCGGTCTCCCATCCGCTGCCAAGCTC
TGGCAGACACGGTGATGGCTCAGAGAGGCCTGTCGATGACGTCGAGAGAG
GTAGCGGCATCGCGGCAGTGCGGAGACATCCCGACGGAGACGCTGTCGCT
GGACGACGACTTCGTGGTGATCAACAAGCCGGCGGACGTGCGTATGGATG
GGAACTTCGACGTAGCCGTGGACAAGCTGATCAGGCACTGGTGCCCAACC
CTGGAAGACAAGGAGCTTAAGTGGGTGCACCAGTTGGACTTCGCCGGCGG
ACGTGCGTATGGATGGGAACTTCGACGTAGCCGTGGACAAGCTGATCAGG
CACTGGTGCCCAACCCTGGAAGACAAGGAGCTTAAGTGGGTGCACCAGTT
GGACTTCGCGACATCAGGGGTGTTGTGCGTCGCGCTCCACCGAGAAGCGG
CGGCACGTGGCTGCGAGGCGTTCCGAGAGCGCCGGGCGAAAAAGTCGTAC
CTCGCGGTGGTCCAGGGAGCGGTCGACCCGGAATCTGTCCCACGGCGGGA
GGGGGAGCCGGAGGGGTGGCGACATCAGGGGTGTTGTGCGTCGCGCTCCA
CCGAGAAGCGGCGGCACGTGGCTGCGAGGCGTTCCGAGAGCGCCGGGCGA
AAAAGTCGTACCTCGCGGTGGTCCAGGGAGCGGTCGACCCGGAATCTGTC
CCACGGCGGGAGGGGGAGCCGGAGGGGTGG
back to top