mRNA_E-fasciculatus_F_contig12870.2167.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: D8LBC7_ECTSI (tRNA Pseudouridine Synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBC7_ECTSI) HSP 1 Score: 139 bits (349), Expect = 1.590e-36 Identity = 69/82 (84.15%), Postives = 70/82 (85.37%), Query Frame = 1
Query: 1 GEGGVASSSSKKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQVTS 246
GEG VALLISYWGNNYQGLQIN+GARTIEAELELALYLAG ISKDNFGNPRKVSWSRAGRTDKGVHAAAQV S
Sbjct: 180 GEGXXXXXXXXXXVALLISYWGNNYQGLQINKGARTIEAELELALYLAGTISKDNFGNPRKVSWSRAGRTDKGVHAAAQVIS 261
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: A0A1Y1HNE8_KLENI (Pseudouridylate synthase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HNE8_KLENI) HSP 1 Score: 103 bits (257), Expect = 5.710e-24 Identity = 50/76 (65.79%), Postives = 58/76 (76.32%), Query Frame = 1
Query: 19 SSSSKKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQVTS 246
S K+KVAL +Y G YQG+Q N GA+TIEAELELALY AGAI+KDNFG+P+KV W R+ RTDKGV A QV S
Sbjct: 53 SKFKKRKVALFFAYIGAGYQGMQRNPGAKTIEAELELALYKAGAITKDNFGDPKKVHWMRSARTDKGVSAVGQVVS 128
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: K8YPP2_NANGC (Trna pseudouridine synthase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YPP2_NANGC) HSP 1 Score: 100 bits (249), Expect = 2.250e-23 Identity = 46/71 (64.79%), Postives = 59/71 (83.10%), Query Frame = 1
Query: 28 SKKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQV 240
+KKKVA++I Y G ++QG+Q+N GA TIEAELE A+Y AG I + NFG+ +K+ WSR+GRTDKGVHAAAQV
Sbjct: 89 NKKKVAMIIGYCGTDFQGMQMNPGAITIEAELEKAMYEAGCIKEANFGSLQKIGWSRSGRTDKGVHAAAQV 159
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: A0A176VP40_MARPO (PseudoU_synth_1 domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VP40_MARPO) HSP 1 Score: 101 bits (251), Expect = 3.550e-23 Identity = 50/82 (60.98%), Postives = 58/82 (70.73%), Query Frame = 1
Query: 1 GEGGVASSSSKKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQVTS 246
GE G K+K+A++++Y G YQG+Q N GA TIE ELE ALY AGAISK+NFG PRKV W RA RTDKGV A QV S
Sbjct: 112 GEAGNTKRLKKRKIAMIVAYCGAAYQGMQRNPGAITIEGELEQALYRAGAISKENFGVPRKVDWMRAARTDKGVSAIGQVVS 193
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: A0A4D9D7P8_9STRA (PseudoU_synth_1 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7P8_9STRA) HSP 1 Score: 100 bits (249), Expect = 7.250e-23 Identity = 46/71 (64.79%), Postives = 59/71 (83.10%), Query Frame = 1
Query: 28 SKKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQV 240
+KKKVA++I Y G ++QG+Q+N GA TIEAELE A+Y AG I + NFG+ +K+ WSR+GRTDKGVHAAAQV
Sbjct: 96 NKKKVAMIIGYCGTDFQGMQMNPGAITIEAELEKAMYEAGCIKEANFGSLQKIGWSRSGRTDKGVHAAAQV 166
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: A0A7S2INJ9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2INJ9_9EUKA) HSP 1 Score: 92.8 bits (229), Expect = 4.220e-22 Identity = 46/75 (61.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query: 22 SSSKKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQVTS 246
S+ K+KVALL++Y G Y GLQIN TIE LE A++ AG IS+ N G +KVSWSRAGRTDKGVHAA Q+ S
Sbjct: 22 SNPKRKVALLLAYNGAGYSGLQINPDVETIEKTLEAAIFRAGGISEANHGVLQKVSWSRAGRTDKGVHAAGQIIS 96
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: A0A7S1ET85_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ET85_9RHOD) HSP 1 Score: 98.2 bits (243), Expect = 4.630e-22 Identity = 48/76 (63.16%), Postives = 55/76 (72.37%), Query Frame = 1
Query: 19 SSSSKKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQVTS 246
S+ K+KVAL +SY G Y G+Q N G RTIE ELE A+Y AG ISKDN+G +KV WSRA RTDKGV AA QV S
Sbjct: 45 SALKKRKVALFVSYLGEGYSGMQKNPGVRTIEDELEYAVYQAGGISKDNYGQLQKVHWSRAARTDKGVSAAGQVVS 120
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: A0A7S1TVP3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVP3_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 1.170e-21 Identity = 44/72 (61.11%), Postives = 56/72 (77.78%), Query Frame = 1
Query: 31 KKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQVTS 246
KK++AL+ Y G + GLQIN G RT+EAELELA++ AGA+ +NFGN +K+SW+RA RTDKGVHAA V S
Sbjct: 118 KKRLALIFGYNGKRFSGLQINPGQRTVEAELELAMFKAGAVRNENFGNLQKLSWTRACRTDKGVHAATNVAS 189
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: A0A7S4KAH0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KAH0_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 1.390e-21 Identity = 42/78 (53.85%), Postives = 59/78 (75.64%), Query Frame = 1
Query: 13 VASSSSKKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQVTS 246
++ K+KVALL+++ G +YQG+QIN +R+I+AE+ELALY AG +++ NFG P K WS + RTDKGVH+ AQV S
Sbjct: 84 AVATGPKRKVALLLAFLGTDYQGMQINASSRSIQAEVELALYRAGLLARSNFGYPHKYGWSNSARTDKGVHSCAQVCS 161
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: A0A1E7FH56_9STRA (Pseudouridine synthase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FH56_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 2.000e-21 Identity = 45/72 (62.50%), Postives = 53/72 (73.61%), Query Frame = 1
Query: 31 KKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQVTS 246
K+KVALL+ + G Y G QIN +TI+AE+ELALY +G ISKDNFG K SWS + RTDKGVHA AQV S
Sbjct: 36 KRKVALLLGFLGTKYGGFQINPEQKTIQAEMELALYRSGMISKDNFGTQHKYSWSNSARTDKGVHACAQVCS 107 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12870.2167.1 >prot_E-fasciculatus_F_contig12870.2167.1 ID=prot_E-fasciculatus_F_contig12870.2167.1|Name=mRNA_E-fasciculatus_F_contig12870.2167.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=83bp GEGGVASSSSKKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAback to top mRNA from alignment at E-fasciculatus_F_contig12870:473..1054- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12870.2167.1 ID=mRNA_E-fasciculatus_F_contig12870.2167.1|Name=mRNA_E-fasciculatus_F_contig12870.2167.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=582bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12870:473..1054- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12870:473..1054- >mRNA_E-fasciculatus_F_contig12870.2167.1 ID=mRNA_E-fasciculatus_F_contig12870.2167.1|Name=mRNA_E-fasciculatus_F_contig12870.2167.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=498bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12870:473..1054- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |