prot_E-fasciculatus_F_contig1248.1906.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig1248.1906.1
Unique Nameprot_E-fasciculatus_F_contig1248.1906.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length65
Homology
BLAST of mRNA_E-fasciculatus_F_contig1248.1906.1 vs. uniprot
Match: D8LRP2_ECTSI (Structural maintenance of chromosomes protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP2_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.200e-32
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0
Query:    1 MGRLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLGVQSKHLRSTKLSDLV 65
            MGRLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLGVQSKHLRSTKLSDLV
Sbjct:    1 MGRLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLGVQSKHLRSTKLSDLV 65          
BLAST of mRNA_E-fasciculatus_F_contig1248.1906.1 vs. uniprot
Match: A0A835ZAW7_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAW7_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.840e-28
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 0
Query:    1 MGRLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLGVQSKHLRSTKLSDLV 65
            MGRL+RIE ENFKSYAG+Q IGPF+DFTAVIGPNGAGKSNLMDAISFVLGVQS+HLRS KL DLV
Sbjct:   12 MGRLVRIELENFKSYAGSQTIGPFRDFTAVIGPNGAGKSNLMDAISFVLGVQSRHLRSQKLEDLV 76          
BLAST of mRNA_E-fasciculatus_F_contig1248.1906.1 vs. uniprot
Match: K8YUL1_NANGC (Regulator of chromosome condensation-like protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YUL1_NANGC)

HSP 1 Score: 103 bits (257), Expect = 1.530e-27
Identity = 48/65 (73.85%), Postives = 59/65 (90.77%), Query Frame = 0
Query:    1 MGRLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLGVQSKHLRSTKLSDLV 65
            MGRL R+  ENFKSY GTQ+IGPF+DFTA+IGPNG+GKSNLMDAISFVLGVQS+ LRS+++ +L+
Sbjct:    1 MGRLERVTLENFKSYPGTQVIGPFRDFTAIIGPNGSGKSNLMDAISFVLGVQSRQLRSSQMKELI 65          
BLAST of mRNA_E-fasciculatus_F_contig1248.1906.1 vs. uniprot
Match: A0A482SNL3_9ARCH (Chromosome segregation protein SMC n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SNL3_9ARCH)

HSP 1 Score: 109 bits (272), Expect = 2.670e-26
Identity = 52/65 (80.00%), Postives = 59/65 (90.77%), Query Frame = 0
Query:    1 MGRLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLGVQSKHLRSTKLSDLV 65
            MGRL+++E ENFKSYAGTQ+IGPF DFT +IGPNGAGKSNLMDAISFVLG+QSK LRST L DL+
Sbjct:    1 MGRLLQLELENFKSYAGTQVIGPFYDFTCIIGPNGAGKSNLMDAISFVLGLQSKQLRSTNLKDLI 65          
BLAST of mRNA_E-fasciculatus_F_contig1248.1906.1 vs. uniprot
Match: SMC1_SCHPO (Structural maintenance of chromosomes protein 1 n=1 Tax=Schizosaccharomyces pombe (strain 972 / ATCC 24843) TaxID=284812 RepID=SMC1_SCHPO)

HSP 1 Score: 106 bits (265), Expect = 2.360e-25
Identity = 50/65 (76.92%), Postives = 59/65 (90.77%), Query Frame = 0
Query:    1 MGRLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLGVQSKHLRSTKLSDLV 65
            MGRL+R+E ENFKSY G QIIGPF+DFT++IGPNGAGKSNLMDAISFVLGV+S HLRST + +L+
Sbjct:    1 MGRLLRLEVENFKSYRGHQIIGPFEDFTSIIGPNGAGKSNLMDAISFVLGVKSSHLRSTNVKELI 65          
BLAST of mRNA_E-fasciculatus_F_contig1248.1906.1 vs. uniprot
Match: G4ZWT4_PHYSP (SMC_N domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZWT4_PHYSP)

HSP 1 Score: 101 bits (251), Expect = 3.800e-25
Identity = 46/65 (70.77%), Postives = 57/65 (87.69%), Query Frame = 0
Query:    1 MGRLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLGVQSKHLRSTKLSDLV 65
            MGR+ R+E ENFKSY G  ++GPF+ FTAV+GPNG+GKSN+MDAI+FVLGV S+HLRST+L DLV
Sbjct:    1 MGRIARLELENFKSYGGVHVVGPFQRFTAVVGPNGSGKSNVMDAIAFVLGVHSRHLRSTQLKDLV 65          
BLAST of mRNA_E-fasciculatus_F_contig1248.1906.1 vs. uniprot
Match: B6JZ09_SCHJY (Structural maintenance of chromosomes protein n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6JZ09_SCHJY)

HSP 1 Score: 105 bits (261), Expect = 8.190e-25
Identity = 48/65 (73.85%), Postives = 58/65 (89.23%), Query Frame = 0
Query:    1 MGRLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLGVQSKHLRSTKLSDLV 65
            MGRL+R+E ENFKSY G Q+IGPF DFT++IGPNGAGKSNLMDAISFV+G++S HLRS+ L DL+
Sbjct:    1 MGRLVRLEVENFKSYRGFQVIGPFYDFTSIIGPNGAGKSNLMDAISFVVGIKSSHLRSSNLKDLI 65          
BLAST of mRNA_E-fasciculatus_F_contig1248.1906.1 vs. uniprot
Match: A0A1Y2I0N3_9FUNG (Structural maintenance of chromosomes protein n=2 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2I0N3_9FUNG)

HSP 1 Score: 105 bits (261), Expect = 8.190e-25
Identity = 50/65 (76.92%), Postives = 57/65 (87.69%), Query Frame = 0
Query:    1 MGRLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLGVQSKHLRSTKLSDLV 65
            MGRL+++E  NFKSY G  +IGPFKDFTAVIGPNG+GKSNLMDAISFVLGVQS HLRST L +L+
Sbjct:    1 MGRLVQLEVTNFKSYRGHHVIGPFKDFTAVIGPNGSGKSNLMDAISFVLGVQSAHLRSTNLKELI 65          
BLAST of mRNA_E-fasciculatus_F_contig1248.1906.1 vs. uniprot
Match: A0A835U4D9_VANPL (SMC_N domain-containing protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835U4D9_VANPL)

HSP 1 Score: 100 bits (248), Expect = 9.560e-25
Identity = 46/64 (71.88%), Postives = 56/64 (87.50%), Query Frame = 0
Query:    2 GRLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLGVQSKHLRSTKLSDLV 65
            G+++R+E +NFKSY G Q+IGPF DFTA+IGPNGAGKSNLMDAISFVLGV+S HLR  +L DL+
Sbjct:    8 GKIVRLELDNFKSYKGRQLIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRSTHLRGAQLRDLI 71          
BLAST of mRNA_E-fasciculatus_F_contig1248.1906.1 vs. uniprot
Match: A0A0A9E2E7_ARUDO (SMC_N domain-containing protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9E2E7_ARUDO)

HSP 1 Score: 101 bits (252), Expect = 1.370e-24
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 0
Query:    2 GRLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLGVQSKHLRSTKLSDLV 65
            GR+ R+E ENFKSY GTQ IGPF DFTA+IGPNGAGKSNLMDAISFVLGV+S HLR  +L DL+
Sbjct:   20 GRIHRLEGENFKSYKGTQTIGPFFDFTAIIGPNGAGKSNLMDAISFVLGVRSAHLRGAQLKDLI 83          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1248.1906.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRP2_ECTSI1.200e-32100.00Structural maintenance of chromosomes protein n=1 ... [more]
A0A835ZAW7_9STRA1.840e-2887.69Structural maintenance of chromosomes protein n=1 ... [more]
K8YUL1_NANGC1.530e-2773.85Regulator of chromosome condensation-like protein ... [more]
A0A482SNL3_9ARCH2.670e-2680.00Chromosome segregation protein SMC n=1 Tax=archaeo... [more]
SMC1_SCHPO2.360e-2576.92Structural maintenance of chromosomes protein 1 n=... [more]
G4ZWT4_PHYSP3.800e-2570.77SMC_N domain-containing protein n=1 Tax=Phytophtho... [more]
B6JZ09_SCHJY8.190e-2573.85Structural maintenance of chromosomes protein n=1 ... [more]
A0A1Y2I0N3_9FUNG8.190e-2576.92Structural maintenance of chromosomes protein n=2 ... [more]
A0A835U4D9_VANPL9.560e-2571.88SMC_N domain-containing protein n=1 Tax=Vanilla pl... [more]
A0A0A9E2E7_ARUDO1.370e-2476.56SMC_N domain-containing protein n=1 Tax=Arundo don... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 1..65
e-value: 8.5E-24
score: 86.8
NoneNo IPR availablePANTHERPTHR18937STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBERcoord: 1..65
IPR003395RecF/RecN/SMC, N-terminalPFAMPF02463SMC_Ncoord: 4..65
e-value: 1.3E-23
score: 83.6
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 3..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1248contigE-fasciculatus_F_contig1248:838..1976 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1248.1906.1mRNA_E-fasciculatus_F_contig1248.1906.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig1248 838..1976 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig1248.1906.1 ID=prot_E-fasciculatus_F_contig1248.1906.1|Name=mRNA_E-fasciculatus_F_contig1248.1906.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=65bp
MGRLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLG
VQSKHLRSTKLSDLV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR003395RecF/RecN/SMC_N