mRNA_E-fasciculatus_F_contig1248.1906.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1248.1906.1
Unique NamemRNA_E-fasciculatus_F_contig1248.1906.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1248.1906.1 vs. uniprot
Match: D8LRP2_ECTSI (Structural maintenance of chromosomes protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP2_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.200e-32
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 MGRLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLGVQSKHLRSTKLSDLV 195
            MGRLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLGVQSKHLRSTKLSDLV
Sbjct:    1 MGRLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLGVQSKHLRSTKLSDLV 65
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BLAST of mRNA_E-fasciculatus_F_contig1248.1906.1 vs. uniprot
Match: A0A835ZAW7_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAW7_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.840e-28
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    1 MGRLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLGVQSKHLRSTKLSDLV 195
            MGRL+RIE ENFKSYAG+Q IGPF+DFTAVIGPNGAGKSNLMDAISFVLGVQS+HLRS KL DLV
Sbjct:   12 MGRLVRIELENFKSYAGSQTIGPFRDFTAVIGPNGAGKSNLMDAISFVLGVQSRHLRSQKLEDLV 76
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BLAST of mRNA_E-fasciculatus_F_contig1248.1906.1 vs. uniprot
Match: K8YUL1_NANGC (Regulator of chromosome condensation-like protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YUL1_NANGC)

HSP 1 Score: 103 bits (257), Expect = 1.530e-27
Identity = 48/65 (73.85%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    1 MGRLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLGVQSKHLRSTKLSDLV 195
            MGRL R+  ENFKSY GTQ+IGPF+DFTA+IGPNG+GKSNLMDAISFVLGVQS+ LRS+++ +L+
Sbjct:    1 MGRLERVTLENFKSYPGTQVIGPFRDFTAIIGPNGSGKSNLMDAISFVLGVQSRQLRSSQMKELI 65
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BLAST of mRNA_E-fasciculatus_F_contig1248.1906.1 vs. uniprot
Match: A0A482SNL3_9ARCH (Chromosome segregation protein SMC n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SNL3_9ARCH)

HSP 1 Score: 109 bits (272), Expect = 2.670e-26
Identity = 52/65 (80.00%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    1 MGRLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLGVQSKHLRSTKLSDLV 195
            MGRL+++E ENFKSYAGTQ+IGPF DFT +IGPNGAGKSNLMDAISFVLG+QSK LRST L DL+
Sbjct:    1 MGRLLQLELENFKSYAGTQVIGPFYDFTCIIGPNGAGKSNLMDAISFVLGLQSKQLRSTNLKDLI 65
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BLAST of mRNA_E-fasciculatus_F_contig1248.1906.1 vs. uniprot
Match: SMC1_SCHPO (Structural maintenance of chromosomes protein 1 n=1 Tax=Schizosaccharomyces pombe (strain 972 / ATCC 24843) TaxID=284812 RepID=SMC1_SCHPO)

HSP 1 Score: 106 bits (265), Expect = 2.360e-25
Identity = 50/65 (76.92%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    1 MGRLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLGVQSKHLRSTKLSDLV 195
            MGRL+R+E ENFKSY G QIIGPF+DFT++IGPNGAGKSNLMDAISFVLGV+S HLRST + +L+
Sbjct:    1 MGRLLRLEVENFKSYRGHQIIGPFEDFTSIIGPNGAGKSNLMDAISFVLGVKSSHLRSTNVKELI 65
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BLAST of mRNA_E-fasciculatus_F_contig1248.1906.1 vs. uniprot
Match: G4ZWT4_PHYSP (SMC_N domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZWT4_PHYSP)

HSP 1 Score: 101 bits (251), Expect = 3.800e-25
Identity = 46/65 (70.77%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:    1 MGRLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLGVQSKHLRSTKLSDLV 195
            MGR+ R+E ENFKSY G  ++GPF+ FTAV+GPNG+GKSN+MDAI+FVLGV S+HLRST+L DLV
Sbjct:    1 MGRIARLELENFKSYGGVHVVGPFQRFTAVVGPNGSGKSNVMDAIAFVLGVHSRHLRSTQLKDLV 65
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BLAST of mRNA_E-fasciculatus_F_contig1248.1906.1 vs. uniprot
Match: B6JZ09_SCHJY (Structural maintenance of chromosomes protein n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6JZ09_SCHJY)

HSP 1 Score: 105 bits (261), Expect = 8.190e-25
Identity = 48/65 (73.85%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:    1 MGRLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLGVQSKHLRSTKLSDLV 195
            MGRL+R+E ENFKSY G Q+IGPF DFT++IGPNGAGKSNLMDAISFV+G++S HLRS+ L DL+
Sbjct:    1 MGRLVRLEVENFKSYRGFQVIGPFYDFTSIIGPNGAGKSNLMDAISFVVGIKSSHLRSSNLKDLI 65
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BLAST of mRNA_E-fasciculatus_F_contig1248.1906.1 vs. uniprot
Match: A0A1Y2I0N3_9FUNG (Structural maintenance of chromosomes protein n=2 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2I0N3_9FUNG)

HSP 1 Score: 105 bits (261), Expect = 8.190e-25
Identity = 50/65 (76.92%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:    1 MGRLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLGVQSKHLRSTKLSDLV 195
            MGRL+++E  NFKSY G  +IGPFKDFTAVIGPNG+GKSNLMDAISFVLGVQS HLRST L +L+
Sbjct:    1 MGRLVQLEVTNFKSYRGHHVIGPFKDFTAVIGPNGSGKSNLMDAISFVLGVQSAHLRSTNLKELI 65
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BLAST of mRNA_E-fasciculatus_F_contig1248.1906.1 vs. uniprot
Match: A0A835U4D9_VANPL (SMC_N domain-containing protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835U4D9_VANPL)

HSP 1 Score: 100 bits (248), Expect = 9.560e-25
Identity = 46/64 (71.88%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    4 GRLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLGVQSKHLRSTKLSDLV 195
            G+++R+E +NFKSY G Q+IGPF DFTA+IGPNGAGKSNLMDAISFVLGV+S HLR  +L DL+
Sbjct:    8 GKIVRLELDNFKSYKGRQLIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRSTHLRGAQLRDLI 71
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1248.1906.1 vs. uniprot
Match: A0A0A9E2E7_ARUDO (SMC_N domain-containing protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9E2E7_ARUDO)

HSP 1 Score: 101 bits (252), Expect = 1.370e-24
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    4 GRLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLGVQSKHLRSTKLSDLV 195
            GR+ R+E ENFKSY GTQ IGPF DFTA+IGPNGAGKSNLMDAISFVLGV+S HLR  +L DL+
Sbjct:   20 GRIHRLEGENFKSYKGTQTIGPFFDFTAIIGPNGAGKSNLMDAISFVLGVRSAHLRGAQLKDLI 83
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1248.1906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRP2_ECTSI1.200e-32100.00Structural maintenance of chromosomes protein n=1 ... [more]
A0A835ZAW7_9STRA1.840e-2887.69Structural maintenance of chromosomes protein n=1 ... [more]
K8YUL1_NANGC1.530e-2773.85Regulator of chromosome condensation-like protein ... [more]
A0A482SNL3_9ARCH2.670e-2680.00Chromosome segregation protein SMC n=1 Tax=archaeo... [more]
SMC1_SCHPO2.360e-2576.92Structural maintenance of chromosomes protein 1 n=... [more]
G4ZWT4_PHYSP3.800e-2570.77SMC_N domain-containing protein n=1 Tax=Phytophtho... [more]
B6JZ09_SCHJY8.190e-2573.85Structural maintenance of chromosomes protein n=1 ... [more]
A0A1Y2I0N3_9FUNG8.190e-2576.92Structural maintenance of chromosomes protein n=2 ... [more]
A0A835U4D9_VANPL9.560e-2571.88SMC_N domain-containing protein n=1 Tax=Vanilla pl... [more]
A0A0A9E2E7_ARUDO1.370e-2476.56SMC_N domain-containing protein n=1 Tax=Arundo don... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1248contigE-fasciculatus_F_contig1248:838..1976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue1e-27
Seed eggNOG ortholog2880.D8LRP2
Preferred namesmc1
KEGG koko:K06636
KEGG Pathwayko04110,ko04111,ko04113,ko04114,map04110,map04111,map04113,map04114
GOsGO:0000793,GO:0000819,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008150,GO:0008278,GO:0009507,GO:0009536,GO:0009987,GO:0016043,GO:0022402,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044427,GO:0044444,GO:0044446,GO:0044464,GO:0051276,GO:0071840,GO:0098813
EggNOG free text desc.sister chromatid cohesion
EggNOG OGsCOG1196@1,KOG0018@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size195
Cds size195
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927754.7226393-CDS-E-fasciculatus_F_contig1248:837..8951622927754.7226393-CDS-E-fasciculatus_F_contig1248:837..895Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1248 838..895 -
1695995680.4894006-CDS-E-fasciculatus_F_contig1248:837..8951695995680.4894006-CDS-E-fasciculatus_F_contig1248:837..895Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1248 838..895 -
1622927754.7334085-CDS-E-fasciculatus_F_contig1248:1839..19761622927754.7334085-CDS-E-fasciculatus_F_contig1248:1839..1976Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1248 1840..1976 -
1695995680.5123112-CDS-E-fasciculatus_F_contig1248:1839..19761695995680.5123112-CDS-E-fasciculatus_F_contig1248:1839..1976Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1248 1840..1976 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1248.1906.1prot_E-fasciculatus_F_contig1248.1906.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1248 838..1976 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1248.1906.1

>prot_E-fasciculatus_F_contig1248.1906.1 ID=prot_E-fasciculatus_F_contig1248.1906.1|Name=mRNA_E-fasciculatus_F_contig1248.1906.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=65bp
MGRLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLG
VQSKHLRSTKLSDLV
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mRNA from alignment at E-fasciculatus_F_contig1248:838..1976-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1248.1906.1 ID=mRNA_E-fasciculatus_F_contig1248.1906.1|Name=mRNA_E-fasciculatus_F_contig1248.1906.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1139bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1248:838..1976- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGCGTCTCATACGAATCGAGGCGGAGAACTTCAAGTCCTATGCCGG
GACTCAGATCATCGGCCCTTTCAAGGACTTCACGGCGGTGATAGGGCCCA
ATGGTGCCGGAAAATCCAACCTCATGGATGCCATCAGGTATGATACAAAA
TCTATACGGGGAAGAGAGGGCGGTCTGTTGGCAAGGCAGAGGCAGCAAGC
AGTTACCGGCAGTTTGGCATCGGGGCATGACGCACCACCTCGTTGACATT
GCGATGCTTTGGTGGCGGTTCCCTTCTACTGCTGTGCTGCGCAGTCGTGG
GTGTTGGCGAGTTTTCTCCCCGTCCCACAGAGAAGTAGGGCTGCCTTGTC
TATGCTACAAACAGCAGTAGGTAGATACGATAGCAGCGAGACATGAGACT
CATGACTCATGACACCACCCCCCATGTTGTTGGTACCACAGCAGCATTGA
GAGCAGGACCTTCCTAGCGTAAGAGGATACCTCTCCAGAGATCGGTCAAG
TAACGCCTTGTGCACGTCCCCGCTGTTTTGCGGAATATATCTGATACACA
TTGTCGAGAAACGCCTGGTCGGAACTCAAAACTCGATTCAATTGCTCTGT
CGTCGACAGTTGTCTCCAGTCTCCCCAGCTATAATCTACAATGTTGTCGC
CTTGCCCCACATCACACGCGCTCACTAGCTTGTTTATTTCCCTGACCCGG
CATGAGCTCCTCGCGTATGCCCCCCGCAATTTCACTACATCATTCTACGC
CGCATGCAGTGTCACGTGGATATCCTTCTCCGTCCCTCGCGTACAGAAGT
GCATTGGTCAACATGTGCTGTACTGTAGTCTCTTCGAGAAAGGGTGCGTA
CTGCTTTAAGTCTAGGTTAAAAATCCAAGCACGCCCGTGTTTTCTGGCCA
GCACAGCACTGATAGCACCCTTCTCCTAACAGCTCTCACTGGACTCAAAA
CGAACAGAGCGCTTGGTAGTGTCACCCCAGCGTTTGTGTCTGGGAACGAT
ATGTAGCCGCCCCCCTCCTCCTCCCTCATGCGCGCGTTTGGTTGTCTTCG
CCCCTGCCACGGCCGGTGGTGTGTCGAGCAGTTTCGTCCTGGGCGTGCAG
TCGAAGCACCTGCGGTCGACCAAGCTCAGCGACCTCGTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1248:838..1976-

>mRNA_E-fasciculatus_F_contig1248.1906.1 ID=mRNA_E-fasciculatus_F_contig1248.1906.1|Name=mRNA_E-fasciculatus_F_contig1248.1906.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=390bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1248:838..1976- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGCGTCTCATACGAATCGAGGCGGAGAACTTCAAGTCCTATGCCGG
GACTCAGATCATCGGCCCTTTCAAGGACTTCACGGCGGTGATAGGGCCCA
ATGGTGCCGGAAAATCCAACCTCATGGATGCCATCAGATGGGGCGTCTCA
TACGAATCGAGGCGGAGAACTTCAAGTCCTATGCCGGGACTCAGATCATC
GGCCCTTTCAAGGACTTCACGGCGGTGATAGGGCCCAATGGTGCCGGAAA
ATCCAACCTCATGGATGCCATCAGTTTCGTCCTGGGCGTGCAGTCGAAGC
ACCTGCGGTCGACCAAGCTCAGCGACCTCGTCTTTCGTCCTGGGCGTGCA
GTCGAAGCACCTGCGGTCGACCAAGCTCAGCGACCTCGTC
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