prot_E-fasciculatus_F_contig12402.1852.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig12402.1852.1
Unique Nameprot_E-fasciculatus_F_contig12402.1852.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length316
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12402.1852.1 vs. uniprot
Match: D7FS92_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS92_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 5.300e-29
Identity = 187/272 (68.75%), Postives = 192/272 (70.59%), Query Frame = 0 
Query:    1 THRGLSDLPALKSLESASLRRCSGLGAEATLCLSNSPGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAGLEQAADGLKRLNLGWCAGLVGGLAAGVGXXXXXXXXXXXXXXXXXXXXDEALGEGTRGRRR-RGRWVLPVLPKLERVCLAR-------LSAAERPRP----------VRVRQANRERRAHAVGPPRPRDPRPEQLQ-------VEELAQKLPGLTALNLDRCTVG 247
            T  GLSDLPALKSLESASLRRCSGLG EATLCLSNSPGL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       LAGLEQAA GLKRLNLGWCAGLV G AA   XXXXXXXXXXXXXXXXXXXX              RGRWVLPVLPKLERVCLAR       LS      P          VR+ ++     AH +   +  D     L        VEELAQKLPGLTALNLDRC VG
Sbjct:   94 TDTGLSDLPALKSLESASLRRCSGLGTEATLCLSNSPGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGLTVDGLAGLEQAAGGLKRLNLGWCAGLVRGSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRWVLPVLPKLERVCLARSGIGNEGLSRLSAGSPLLRDLDLCGCVRLTESG----AHTLSALQ--DLETLDLSNCRVYSCVEELAQKLPGLTALNLDRCNVG 359
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BLAST of mRNA_E-fasciculatus_F_contig12402.1852.1 vs. uniprot
Match: A0A6H5KU28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU28_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.470e-22
Identity = 159/203 (78.33%), Postives = 159/203 (78.33%), Query Frame = 0 
Query:    1 THRGLSDLPALKSLESASLRRCSGLGAEATLCLSNSPGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAGLEQAADGLKRLNLGWCAGLVGGLAAG----------------VGXXXXXXXXXXXXXXXXXXXXDEALGEGTRGRRRRGRWVLPVLPKLERVCLAR 187
            T  GLSDLPALKSLESASLRRCSGLGAEATLCLSNSPGL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       LAGLEQAA GLKRLNLGWCAGLV G AA                   XXXXXXXXXXXXXXXXXXXX           R RGRWVLPVLPKLERVCLAR
Sbjct:  238 TDTGLSDLPALKSLESASLRRCSGLGAEATLCLSNSPGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGLTVDGLAGLEQAAGGLKRLNLGWCAGLVRGSAAAGWAGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRWRGRWVLPVLPKLERVCLAR 440
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12402.1852.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FS92_ECTSI5.300e-2968.75Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KU28_9PHAE1.470e-2278.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 233..257
e-value: 4.5
score: 16.2
coord: 258..281
e-value: 47.0
score: 9.3
coord: 62..86
e-value: 11.0
score: 14.2
coord: 36..61
e-value: 3.2
score: 16.8
coord: 282..305
e-value: 160.0
score: 5.2
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..131
e-value: 2.8E-20
score: 74.5
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 221..315
e-value: 5.3E-20
score: 73.2
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 234..294
e-value: 1.9E-6
score: 27.6
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 62..80
e-value: 0.15
score: 12.2
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 226..313
coord: 11..124
NoneNo IPR availablePANTHERPTHR13382:SF6SCF E3 UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1coord: 226..313
coord: 11..124
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 7..314

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12402contigE-fasciculatus_F_contig12402:55..3517 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12402.1852.1mRNA_E-fasciculatus_F_contig12402.1852.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig12402 55..3517 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig12402.1852.1 ID=prot_E-fasciculatus_F_contig12402.1852.1|Name=mRNA_E-fasciculatus_F_contig12402.1852.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=316bp
THRGLSDLPALKSLESASLRRCSGLGAEATLCLSNSPGLETLSLAHCPLL
NDAAVGNLAGLSRLRSLELEGCENISDEGLRLACRLPSLTCLNASRCHGL
TVEGLAGLEQAADGLKRLNLGWCAGLVGGLAAGVGGGEEESDEDDEDDSG
GGDSDDEALGEGTRGRRRRGRWVLPVLPKLERVCLARLSAAERPRPVRVR
QANRERRAHAVGPPRPRDPRPEQLQVEELAQKLPGLTALNLDRCTVGDTG
VRALSSLTKLERLNLADTSITDAGMSHLAPLTRLKDLNLFFCHITDAGLG
PLAALSSLVRLNLDTR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf
IPR006553Leu-rich_rpt_Cys-con_subtyp