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Homology
BLAST of mRNA_E-fasciculatus_F_contig12402.1852.1 vs. uniprot
Match: D7FS92_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS92_ECTSI) HSP 1 Score: 126 bits (317), Expect = 5.300e-29 Identity = 187/272 (68.75%), Postives = 192/272 (70.59%), Query Frame = 1
Query: 1 THRGLSDLPALKSLESASLRRCSGLGAEATLCLSNSPGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAGLEQAADGLKRLNLGWCAGLVGGLAAGVGXXXXXXXXXXXXXXXXXXXXDEALGEGTRGRRR-RGRWVLPVLPKLERVCLAR-------LSAAERPRP----------VRVRQANRERRAHAVGPPRPRDPRPEQLQ-------VEELAQKLPGLTALNLDRCTVG 741
T GLSDLPALKSLESASLRRCSGLG EATLCLSNSPGL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LAGLEQAA GLKRLNLGWCAGLV G AA XXXXXXXXXXXXXXXXXXXX RGRWVLPVLPKLERVCLAR LS P VR+ ++ AH + + D L VEELAQKLPGLTALNLDRC VG
Sbjct: 94 TDTGLSDLPALKSLESASLRRCSGLGTEATLCLSNSPGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGLTVDGLAGLEQAAGGLKRLNLGWCAGLVRGSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRWVLPVLPKLERVCLARSGIGNEGLSRLSAGSPLLRDLDLCGCVRLTESG----AHTLSALQ--DLETLDLSNCRVYSCVEELAQKLPGLTALNLDRCNVG 359
BLAST of mRNA_E-fasciculatus_F_contig12402.1852.1 vs. uniprot
Match: A0A6H5KU28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU28_9PHAE) HSP 1 Score: 107 bits (268), Expect = 1.470e-22 Identity = 159/203 (78.33%), Postives = 159/203 (78.33%), Query Frame = 1
Query: 1 THRGLSDLPALKSLESASLRRCSGLGAEATLCLSNSPGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAGLEQAADGLKRLNLGWCAGLVGGLAAG----------------VGXXXXXXXXXXXXXXXXXXXXDEALGEGTRGRRRRGRWVLPVLPKLERVCLAR 561
T GLSDLPALKSLESASLRRCSGLGAEATLCLSNSPGL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LAGLEQAA GLKRLNLGWCAGLV G AA XXXXXXXXXXXXXXXXXXXX R RGRWVLPVLPKLERVCLAR
Sbjct: 238 TDTGLSDLPALKSLESASLRRCSGLGAEATLCLSNSPGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGLTVDGLAGLEQAAGGLKRLNLGWCAGLVRGSAAAGWAGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRWRGRWVLPVLPKLERVCLAR 440
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 130.2 |
| Seed ortholog evalue | 1.7e-27 |
| Seed eggNOG ortholog | 2880.D7FS92 |
| KEGG ko | ko:K10275,ko:K10280 |
| EggNOG free text desc. | F-box LRR-repeat protein |
| EggNOG OGs | KOG1947@1,KOG1947@2759 |
| COG Functional cat. | B |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko04121 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 948 |
| Cds size | 948 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12402.1852.1 >prot_E-fasciculatus_F_contig12402.1852.1 ID=prot_E-fasciculatus_F_contig12402.1852.1|Name=mRNA_E-fasciculatus_F_contig12402.1852.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=316bp
THRGLSDLPALKSLESASLRRCSGLGAEATLCLSNSPGLETLSLAHCPLL
NDAAVGNLAGLSRLRSLELEGCENISDEGLRLACRLPSLTCLNASRCHGL
TVEGLAGLEQAADGLKRLNLGWCAGLVGGLAAGVGGGEEESDEDDEDDSG
GGDSDDEALGEGTRGRRRRGRWVLPVLPKLERVCLARLSAAERPRPVRVR
QANRERRAHAVGPPRPRDPRPEQLQVEELAQKLPGLTALNLDRCTVGDTG
VRALSSLTKLERLNLADTSITDAGMSHLAPLTRLKDLNLFFCHITDAGLG
PLAALSSLVRLNLDTR back to topmRNA from alignment at E-fasciculatus_F_contig12402:55..3517+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig12402.1852.1 ID=mRNA_E-fasciculatus_F_contig12402.1852.1|Name=mRNA_E-fasciculatus_F_contig12402.1852.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3463bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12402:55..3517+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACACACAGGGGTCTTTCCGACCTTCCGGCCCTCAAGAGCCTCGAGTCCGC
GAGCCTCAGGCGATGCAGCGGTCTCGGCGCGGAAGCCACCCTCTGCCTCT
CCAACTCCCCGGGGCTGGAGACGCTGAGCCTGGCGCACTGTCCCCTCCTG
AACGACGCCGCGGTGGGGAACCTGGCGGGGCTGTCGAGGCTCCGGTCGCT
TGAGCTCGAGGGTTGTGAGGTGCGTGAGGCGAACGGCGGTGGTTTTTGGT
AGAGGAGGAGAGGGTGATATTGTGGCGGTCTGGGTTGGAAGGCTGAGAGG
TGGGCGAGACGAGAGAGGGTTTTTGTGGTGAAGAGGTTTCTGTCGTCTGA
GATGGAAAGGATGTGAGGTGCGTGAGACGAACGGAGTGTTTATTGTACAG
GAGGAGAGGGTTTTTATTTTTGACTCCTGCCTGGCTTGGACGGGTGTGAG
GTGCGTGAGACAAACGGAGGGTTTTCTTGTTGGGTGGATGCGAGGTGAGT
AGCCTCATGCTCATCCCAGAACACCTTGAGACGGATGCCCGCCCCCCCCC
CCCCCCCCCTTCTTCCGCTCCCCTATCCCTTTCCCCCCATGCTGTGTAAT
CTGTCACGAACACGCATACTGTGTTACCACCTCAGAATATCTCCGACGAA
GGCCTGCGGTTGGCGTGCCGGCTGCCGTCCCTGACGTGCCTCAACGCCTC
GCGGTGCCACGGACTCACGGTCGAGGGGCTCGCCGGCCTCGAGCAGGCGG
CGGACGGGCTGAAGCGGCTCAACCTCGGCTGGTGTGCGGGTCTAGTCGGG
GGTCTCGCGGCCGGCGTAGGGGGGGGGGAGGAGGAGAGCGACGAAGACGA
TGAGGATGATAGCGGTGGTGGTGACTCTGATGATGAGGCGTTGGGTGAAG
GGACCAGGGGGAGGAGGAGGAGGGGGCGGTGGGTACTGCCCGTGCTGCCC
AAGCTGGAGCGGGTTTGCCTCGCCAGGTTAGTCAGTCGCTGCTGTTGGGG
TGTCTGCGGGTGGTGTTTGTGGGGTGTCTGTGGGTGGTGTTGGTGTTGGT
GGTGGTGCCAGTGGTGTCACTGCTGTAGCTGTAGCTGTAGCTGTAGCTGT
AGCTGTTGCTGTTGCGTTCACAGCGTTGTTGTTTTCGCGTTGACGGGATG
AAGCGTTTCTCTTGTTTTGGGGGCCGGCTTAGCATTAGCATTGATGGAAC
ACAACACAAGGTTTGTTTGTTGCAGCGTGTTGTGTGCTGTTTGACATCGT
GCTCTGGTGGTACTTGGGAGGATGGTGTGGGGGTTAGTGATTGTTTTTGG
AGTGTTTTGCTCGTGAGGAAGCCCTACGCGGATGAGCATCACGACAGACT
GTGATCATTCAACAGGTCGAGTACGCAAGAACACCAACAAGACGCAACAC
CAACACCAACAACAACAACAACAGCAACAACTAAAGAGCAAACGCTGCTG
AAAAAACAAAACAGGAGCGGCATCGGAAACGAAGGGCTATCCCGCCTCTC
CGCAGGCTCTCCGCTGCTGAGAGACCTCGACCTGTGCGGGTGCGTCAGGC
TAACCGAGAACGGCGCGCACACGCTGTCGGCCCTCCAAGACCTAGAGACC
CTCGACCTGAGCAACTGCAGGTGAGGGCGACGTGTTTCACCATTCGGGGG
GGGGGGGGGGGGGGGAGGGGGTGCCTGCCTCAATCAGGGGTCGACCTCCA
CAACTCAGGTGTGGCGGCGACGTGTATCATCGTCGCGGGGGGGGTGAGGA
AGTCACCTCACTCAGGTATGTAGTCGTTCGGATCGTTGACCACTCCCTCT
CTCGTCCTTTCGAGACGGAGCATGCAGCACCGCCCCCCCCGTAAAGAAAC
GCCTCTTAATCTTCACACTTAACACATGTGGGCGCTCAAGGCGCGGGTTA
TCCGCGTTTCTCGCGCTGCTTTTGTTTTATTTTTTTTTCTTCCTCGAATC
GGCTTTTTATTTCGGCCGAACCTTCTTTCGCCGAATACAGGGATGCGATG
TCTTTACGTATTGACACCCCCCCCTCGCCCCTTTCCACGGTTTCTTCTCT
CTCGTGATTTGTGTCTTCGCGCGACTAAAACAACACCCGCTCGCGTGGAT
CCCTTCCCGTGTACCTCTCCTGCCGGGCTTTGTCGTCGTTTGCCGGGGGG
GGGGGGGGGGGGGAGCAGGCGTGTCCGGGGTGTCGCGGCGGGTCTCGGCC
CGTCCGTTTCTTCGCTGAGCGTGGCGGAGACTTCCGTGGGTGACGCCGAG
GCAAGAAGCTCCTTCTTTCTTTCTTCTGTTCCAAAGTATTTTCTTGTAGA
ATACGTACGTATATACGTTAGCTGCGGTGTGTTGTTTCTTATTTCAACAG
ACTTCTTTTTCGTGTACGTGTGTTTGTCTCCAGTTTTTGAGACACCACAC
ATCCCTTCGCACGGGGCAGTGTCTCGAACGGGTAACCTTTGTGTGATTGT
ATGCGTATTTGTATTTTTTTTTTGCGTACTGCTCTATGCGTACGTATGCG
TATCTGGTTCGTCTTTCGTTGAGGTTGGAACAAGCCGTGTGATTCTGGCT
CCGGTTGGGTTGTTGTTGTCAGCTATGTAGTGCATCTTGTGTGATCCGAG
CGTTTTTTTTTGCTCTCTACGTGGGTGAGGCTTGGAGCTGACCTTTGTGT
ATATCTTTTGTTGCTCTCGCGTTGCTTTTCCCTCGCTTACTTGACTGTTG
ATCGTGATGGTGATATGAATGATGTGCCTGTCCGCCTGTTTGTCGTCCTT
GTCGTGTACATGATGCAGGTGGAGGAGTTAGCGCAGAAGCTCCCGGGGCT
GACGGCCCTCAACCTAGACAGGTGTACCGTAGGGGACACCGGCGTGCGAG
CGCTGTCGTCCCTCACCAAGCTGGAGGTGAGGGGTGCGGCGCCACAGAGG
TCGTCTTCGTTTCCTCTTGCTTTTTGGGCCATCAACATGCTGTATGTATC
GACGGCCGAATGAGACGGGAACGACTGACTAATGTTTTTCGAACGAACCA
TGTACCCGCTCTGTCTGAAAGTGTAGGGCCCATTCGGATATACAATGTGA
ATATCTCAACGGTCCCTGTGTTTCCAGACAAAGAGTTGCATGTCACCTTA
TCTTTTTTTGGCGATGGTGTACCCTTTGCCGGGTGATTCCTTTCCATTCA
GGTTTTTCATCTTTGTTTTCATCTTTGTTTTTGTTGCGTGTCTTGAGCGG
TCGACTCCTAATATCTTCTTGATTTGATTGTTTTCTGGCAACACGCACAC
CGTACTTGACTTGCCGTTTTTTTTTTTTTTCCTTTACCGCACCCGTAGAG
GCTGAACCTCGCAGACACTTCCATCACGGACGCGGGGATGAGCCACCTGG
CTCCCCTCACCCGCCTGAAGGACCTGAACCTCTTCTTCTGCCACATCACG
GACGCCGGACTCGGGCCCTTGGCTGCTCTCTCCAGCCTCGTACGGCTCAA
CCTCGACACGAGG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig12402:55..3517+ >mRNA_E-fasciculatus_F_contig12402.1852.1 ID=mRNA_E-fasciculatus_F_contig12402.1852.1|Name=mRNA_E-fasciculatus_F_contig12402.1852.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1896bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12402:55..3517+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACACACAGGGGTCTTTCCGACCTTCCGGCCCTCAAGAGCCTCGAGTCCGC
GAGCCTCAGGCGATGCAGCGGTCTCGGCGCGGAAGCCACCCTCTGCCTCT
CCAACTCCCCGGGGCTGGAGACGCTGAGCCTGGCGCACTGTCCCCTCCTG
AACGACGCCGCGGTGGGGAACCTGGCGGGGCTGTCGAGGCTCCGGTCGCT
TGAGCTCGAGGGTTGTGAGACACACAGGGGTCTTTCCGACCTTCCGGCCC
TCAAGAGCCTCGAGTCCGCGAGCCTCAGGCGATGCAGCGGTCTCGGCGCG
GAAGCCACCCTCTGCCTCTCCAACTCCCCGGGGCTGGAGACGCTGAGCCT
GGCGCACTGTCCCCTCCTGAACGACGCCGCGGTGGGGAACCTGGCGGGGC
TGTCGAGGCTCCGGTCGCTTGAGCTCGAGGGTTGTGAGAATATCTCCGAC
GAAGGCCTGCGGTTGGCGTGCCGGCTGCCGTCCCTGACGTGCCTCAACGC
CTCGCGGTGCCACGGACTCACGGTCGAGGGGCTCGCCGGCCTCGAGCAGG
CGGCGGACGGGCTGAAGCGGCTCAACCTCGGCTGGTGTGCGGGTCTAGTC
GGGGGTCTCGCGGCCGGCGTAGGGGGGGGGGAGGAGGAGAGCGACGAAGA
CGATGAGGATGATAGCGGTGGTGGTGACTCTGATGATGAGGCGTTGGGTG
AAGGGACCAGGGGGAGGAGGAGGAGGGGGCGGTGGGTACTGCCCGTGCTG
CCCAAGCTGGAGCGGGTTTGCCTCGCCAGAATATCTCCGACGAAGGCCTG
CGGTTGGCGTGCCGGCTGCCGTCCCTGACGTGCCTCAACGCCTCGCGGTG
CCACGGACTCACGGTCGAGGGGCTCGCCGGCCTCGAGCAGGCGGCGGACG
GGCTGAAGCGGCTCAACCTCGGCTGGTGTGCGGGTCTAGTCGGGGGTCTC
GCGGCCGGCGTAGGGGGGGGGGAGGAGGAGAGCGACGAAGACGATGAGGA
TGATAGCGGTGGTGGTGACTCTGATGATGAGGCGTTGGGTGAAGGGACCA
GGGGGAGGAGGAGGAGGGGGCGGTGGGTACTGCCCGTGCTGCCCAAGCTG
GAGCGGGTTTGCCTCGCCAGGCTCTCCGCTGCTGAGAGACCTCGACCTGT
GCGGGTGCGTCAGGCTAACCGAGAACGGCGCGCACACGCTGTCGGCCCTC
CAAGACCTAGAGACCCTCGACCTGAGCAACTGCAGGCTCTCCGCTGCTGA
GAGACCTCGACCTGTGCGGGTGCGTCAGGCTAACCGAGAACGGCGCGCAC
ACGCTGTCGGCCCTCCAAGACCTAGAGACCCTCGACCTGAGCAACTGCAG
GTGGAGGAGTTAGCGCAGAAGCTCCCGGGGCTGACGGCCCTCAACCTAGA
CAGGTGTACCGTAGGGGACACCGGCGTGCGAGCGCTGTCGTCCCTCACCA
AGCTGGAGGTGGAGGAGTTAGCGCAGAAGCTCCCGGGGCTGACGGCCCTC
AACCTAGACAGGTGTACCGTAGGGGACACCGGCGTGCGAGCGCTGTCGTC
CCTCACCAAGCTGGAGAGGCTGAACCTCGCAGACACTTCCATCACGGACG
CGGGGATGAGCCACCTGGCTCCCCTCACCCGCCTGAAGGACCTGAACCTC
TTCTTCTGCCACATCACGGACGCCGGACTCGGGCCCTTGGCTGCTCTCTC
CAGCCTCGTACGGCTCAACCTCGACACGAGGAGGCTGAACCTCGCAGACA
CTTCCATCACGGACGCGGGGATGAGCCACCTGGCTCCCCTCACCCGCCTG
AAGGACCTGAACCTCTTCTTCTGCCACATCACGGACGCCGGACTCGGGCC
CTTGGCTGCTCTCTCCAGCCTCGTACGGCTCAACCTCGACACGAGG back to top
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