prot_E-fasciculatus_F_contig10823.661.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig10823.661.1
Unique Nameprot_E-fasciculatus_F_contig10823.661.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length108
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10823.661.1 vs. uniprot
Match: D8LJ99_ECTSI (PUB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ99_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 1.650e-61
Identity = 95/103 (92.23%), Postives = 99/103 (96.12%), Query Frame = 0 
Query:    3 KEGSLVAVEADLSEVQRCVALSRRQGEDATVGVKYLQNVLKHPGDVKYRTLKTSNKKFYTEVWLNSGMRGLFLALGFRKRGGGIVGLDPLAPNTLDCVAVALQ 105
            +EGSLVAVEADL+EVQRCVALSRRQGED+TVGVKYL+NVL HP DVKYRTLK SNKKFYTEVWLNSGMRGLFLALGFRKR GGIVGLDPLAPNTLDCVAVALQ
Sbjct:   18 EEGSLVAVEADLAEVQRCVALSRRQGEDSTVGVKYLRNVLNHPDDVKYRTLKISNKKFYTEVWLNSGMRGLFLALGFRKRSGGIVGLDPLAPNTLDCVAVALQ 120
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BLAST of mRNA_E-fasciculatus_F_contig10823.661.1 vs. uniprot
Match: A0A0L0DKI2_THETB (UBX domain-containing protein 6 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DKI2_THETB)

HSP 1 Score: 50.4 bits (119), Expect = 6.700e-5
Identity = 23/45 (51.11%), Postives = 29/45 (64.44%), Query Frame = 0 
Query:   35 VKYLQNVLKHPGDVKYRTLKTSNKKFYTEVWLNSGMRGLFLALGF 79
            +KY+ N+L HP D KYR +KTSNK F T +   SG    F A+GF
Sbjct:  219 LKYMDNILAHPDDPKYRRIKTSNKVFSTRIAPVSGALAFFAAIGF 263
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BLAST of mRNA_E-fasciculatus_F_contig10823.661.1 vs. uniprot
Match: A0A444SPK6_ARMVU (PUB domain-containing protein n=2 Tax=Armadillidium TaxID=13346 RepID=A0A444SPK6_ARMVU)

HSP 1 Score: 49.3 bits (116), Expect = 9.670e-5
Identity = 20/45 (44.44%), Postives = 33/45 (73.33%), Query Frame = 0 
Query:   35 VKYLQNVLKHPGDVKYRTLKTSNKKFYTEVWLNSGMRGLFLALGF 79
            +K  +NV+ +P +VKYR+LK SNK+F +EVW + G + + +A G+
Sbjct:   27 IKIFRNVVSNPNEVKYRSLKLSNKRFISEVWQHEGAQVIMVASGW 71
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10823.661.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LJ99_ECTSI1.650e-6192.23PUB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A0L0DKI2_THETB6.700e-551.11UBX domain-containing protein 6 n=1 Tax=Thecamonas... [more]
A0A444SPK6_ARMVU9.670e-544.44PUB domain-containing protein n=2 Tax=Armadillidiu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.58.2190coord: 11..103
e-value: 1.1E-11
score: 46.1
IPR018997PUB domainPFAMPF09409PUBcoord: 36..83
e-value: 1.5E-12
score: 47.3
IPR036339PUB-like domain superfamilySUPERFAMILY143503PUG domain-likecoord: 35..105

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10823contigE-fasciculatus_F_contig10823:3280..4440 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10823.661.1mRNA_E-fasciculatus_F_contig10823.661.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig10823 3280..4440 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig10823.661.1 ID=prot_E-fasciculatus_F_contig10823.661.1|Name=mRNA_E-fasciculatus_F_contig10823.661.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=108bp
DAKEGSLVAVEADLSEVQRCVALSRRQGEDATVGVKYLQNVLKHPGDVKY
RTLKTSNKKFYTEVWLNSGMRGLFLALGFRKRGGGIVGLDPLAPNTLDCV
AVALQAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036339PUB-like_dom_sf
IPR018997PUB_domain