mRNA_E-fasciculatus_F_contig10823.661.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10823.661.1
Unique NamemRNA_E-fasciculatus_F_contig10823.661.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10823.661.1 vs. uniprot
Match: D8LJ99_ECTSI (PUB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ99_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 1.650e-61
Identity = 95/103 (92.23%), Postives = 99/103 (96.12%), Query Frame = 1 
Query:    7 KEGSLVAVEADLSEVQRCVALSRRQGEDATVGVKYLQNVLKHPGDVKYRTLKTSNKKFYTEVWLNSGMRGLFLALGFRKRGGGIVGLDPLAPNTLDCVAVALQ 315
            +EGSLVAVEADL+EVQRCVALSRRQGED+TVGVKYL+NVL HP DVKYRTLK SNKKFYTEVWLNSGMRGLFLALGFRKR GGIVGLDPLAPNTLDCVAVALQ
Sbjct:   18 EEGSLVAVEADLAEVQRCVALSRRQGEDSTVGVKYLRNVLNHPDDVKYRTLKISNKKFYTEVWLNSGMRGLFLALGFRKRSGGIVGLDPLAPNTLDCVAVALQ 120
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BLAST of mRNA_E-fasciculatus_F_contig10823.661.1 vs. uniprot
Match: A0A0L0DKI2_THETB (UBX domain-containing protein 6 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DKI2_THETB)

HSP 1 Score: 50.4 bits (119), Expect = 6.700e-5
Identity = 23/45 (51.11%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:  103 VKYLQNVLKHPGDVKYRTLKTSNKKFYTEVWLNSGMRGLFLALGF 237
            +KY+ N+L HP D KYR +KTSNK F T +   SG    F A+GF
Sbjct:  219 LKYMDNILAHPDDPKYRRIKTSNKVFSTRIAPVSGALAFFAAIGF 263
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BLAST of mRNA_E-fasciculatus_F_contig10823.661.1 vs. uniprot
Match: A0A444SPK6_ARMVU (PUB domain-containing protein n=2 Tax=Armadillidium TaxID=13346 RepID=A0A444SPK6_ARMVU)

HSP 1 Score: 49.3 bits (116), Expect = 9.670e-5
Identity = 20/45 (44.44%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:  103 VKYLQNVLKHPGDVKYRTLKTSNKKFYTEVWLNSGMRGLFLALGF 237
            +K  +NV+ +P +VKYR+LK SNK+F +EVW + G + + +A G+
Sbjct:   27 IKIFRNVVSNPNEVKYRSLKLSNKRFISEVWQHEGAQVIMVASGW 71
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10823.661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LJ99_ECTSI1.650e-6192.23PUB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A0L0DKI2_THETB6.700e-551.11UBX domain-containing protein 6 n=1 Tax=Thecamonas... [more]
A0A444SPK6_ARMVU9.670e-544.44PUB domain-containing protein n=2 Tax=Armadillidiu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10823contigE-fasciculatus_F_contig10823:3280..4440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPUB domain
Ec32 orthologEc-02_005290.1
Exons2
Model size324
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927583.3180575-CDS-E-fasciculatus_F_contig10823:3279..34301622927583.3180575-CDS-E-fasciculatus_F_contig10823:3279..3430Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10823 3280..3430 -
1695995606.6967466-CDS-E-fasciculatus_F_contig10823:3279..34301695995606.6967466-CDS-E-fasciculatus_F_contig10823:3279..3430Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10823 3280..3430 -
1622927583.3289073-CDS-E-fasciculatus_F_contig10823:4267..44401622927583.3289073-CDS-E-fasciculatus_F_contig10823:4267..4440Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10823 4268..4440 -
1695995606.7080305-CDS-E-fasciculatus_F_contig10823:4267..44401695995606.7080305-CDS-E-fasciculatus_F_contig10823:4267..4440Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10823 4268..4440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10823.661.1prot_E-fasciculatus_F_contig10823.661.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10823 3280..4440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10823.661.1

>prot_E-fasciculatus_F_contig10823.661.1 ID=prot_E-fasciculatus_F_contig10823.661.1|Name=mRNA_E-fasciculatus_F_contig10823.661.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=108bp
DAKEGSLVAVEADLSEVQRCVALSRRQGEDATVGVKYLQNVLKHPGDVKY
RTLKTSNKKFYTEVWLNSGMRGLFLALGFRKRGGGIVGLDPLAPNTLDCV
AVALQAR*
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mRNA from alignment at E-fasciculatus_F_contig10823:3280..4440-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10823.661.1 ID=mRNA_E-fasciculatus_F_contig10823.661.1|Name=mRNA_E-fasciculatus_F_contig10823.661.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1161bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10823:3280..4440- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GATGCAAAAGAAGGCAGCCTTGTTGCTGTGGAGGCCGACTTATCAGAAGT
GCAGCGGTGTGTCGCGCTTTCGCGCCGGCAGGGGGAAGACGCAACGGTGG
GGGTCAAGTACCTGCAGAACGTCCTCAAGCACCCAGGCGACGTCAAGTAC
CGCACGCTCAAGACATCCAACAAGTGAGTGAGGTGTCATCCCCCCTCACG
AGTGACCGTGAGCTTGAGACAGGGCACAGAAGGGAATCGGGAGCTAATAT
ATCTGACGCTCGTGGACAGTCTTCACGTCGGGCGTGTATGTACATGCCGG
CAACCCACCTCTATTACTGTTGCCCAGTCATGATGTTCACGCTATTAATA
AACTTCTGTGACATTGTCTTTTGCCTGGAGAACGTATTTTCCGTCGCACA
TTGCAGATAGGTAGCGCCATCACGAAGCTGGAAATAACTTGTTGTTGACG
ACGCTTGCCCTGTACTCTCAATTCCTCTGTGAGATTCCAATAACCACCCT
ATTCTTTGGACTGAGTGTCGATTTCGACATCGAGCAAGAAAGTCAGTTAG
TGCTCAAGTCGTGGTACTCTGAAGAACGAACGAGGTCCTGATATATATGT
ATTTGGTACAATGCAAGGTGAAAAACTTGGGACTCTTTACCAAGCAAGAC
GATGTTGCTTGAATTTGGATACGTTGAATGAAACGACCCCTTTCATATTT
GAATGGCATTTGCTTAGTTCTATGGTGGCGCTACCGTCACCCTACTGACC
ATTGCGTTCCATGTAGGGAGTGCTGCTAGATGCGTCTTCGCCTATTAACG
ATAACACAAGCATACACAAAAACACGCCTATCACACGTACGTGCGCTTTT
GATCCCCAATTCGTTTAGGCGACTGAGTGCCGACACGGCAAACACGAGGC
AAGAGAGAGAGATGAGTCAATTCCTCAAGGGTGTGATCGGTCGATAAAGA
AGGGGTTATTGTTCTGAAGCACGCATACCGCATGCATGTACATGCACACG
ATTGACTTAGGAAATTCTATACGGAGGTCTGGCTCAACAGCGGCATGAGA
GGGCTTTTTCTCGCGCTCGGCTTCAGGAAGCGGGGCGGAGGAATCGTCGG
ACTGGATCCCCTGGCTCCGAACACGCTCGATTGCGTGGCCGTCGCTCTAC
AGGCGAGATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10823:3280..4440-

>mRNA_E-fasciculatus_F_contig10823.661.1 ID=mRNA_E-fasciculatus_F_contig10823.661.1|Name=mRNA_E-fasciculatus_F_contig10823.661.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=648bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10823:3280..4440- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GATGCAAAAGAAGGCAGCCTTGTTGCTGTGGAGGCCGACTTATCAGAAGT
GCAGCGGTGTGTCGCGCTTTCGCGCCGGCAGGGGGAAGACGCAACGGTGG
GGGTCAAGTACCTGCAGAACGTCCTCAAGCACCCAGGCGACGTCAAGTAC
CGCACGCTCAAGACATCCAACAAGATGCAAAAGAAGGCAGCCTTGTTGCT
GTGGAGGCCGACTTATCAGAAGTGCAGCGGTGTGTCGCGCTTTCGCGCCG
GCAGGGGGAAGACGCAACGGTGGGGGTCAAGTACCTGCAGAACGTCCTCA
AGCACCCAGGCGACGTCAAGTACCGCACGCTCAAGACATCCAACAAGAAA
TTCTATACGGAGGTCTGGCTCAACAGCGGCATGAGAGGGCTTTTTCTCGC
GCTCGGCTTCAGGAAGCGGGGCGGAGGAATCGTCGGACTGGATCCCCTGG
CTCCGAACACGCTCGATTGCGTGGCCGTCGCTCTACAGGCGAGATGAGAA
ATTCTATACGGAGGTCTGGCTCAACAGCGGCATGAGAGGGCTTTTTCTCG
CGCTCGGCTTCAGGAAGCGGGGCGGAGGAATCGTCGGACTGGATCCCCTG
GCTCCGAACACGCTCGATTGCGTGGCCGTCGCTCTACAGGCGAGATGA
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