prot_E-fasciculatus_F_contig10671.533.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig10671.533.1
Unique Nameprot_E-fasciculatus_F_contig10671.533.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length233
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10671.533.1 vs. uniprot
Match: D8LNF0_ECTSI (LRAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF0_ECTSI)

HSP 1 Score: 388 bits (996), Expect = 2.320e-133
Identity = 210/225 (93.33%), Postives = 211/225 (93.78%), Query Frame = 0 
Query:    4 QIYVYRGVIQHHGIVTHVPVAGRAGGASAASSPPSGGVRVVHFDSNCDGVESTSLEIFLNGGTLRRATYGASAWSTGLDYGASYGCAADDPALIVTRATEAAKFGEGASGWSGYNLCTNNCETFAYWCSTGRRQVLSRQAARGLVGAGVVAAGASAVVSAGGFASAGAAATVLVPRGVRGVQRGVKAIEWATGVAVVAVAAADVVSTLVTRAPVERNLNLRSGST 228
            Q+YVYRGVIQHHGIVTHVPV GRAGG           VRVVHFDSNCDGVESTSLE FLNGGTLRRATYGASAWSTGLDYGASYGCA DDPALIVTRATEAAKFGEGASGWSGYNLCTNNCETFAYWCSTGRRQVLSRQAARGLVGAGVVAAGASAVVSAGGFASAGAAATVLVPRGVRGVQRGVKAIEWATGVAVVAVAAADVVSTLVTRAPVERNLNLRSGST
Sbjct:  110 QVYVYRGVIQHHGIVTHVPVPGRAGG-----------VRVVHFDSNCDGVESTSLETFLNGGTLRRATYGASAWSTGLDYGASYGCATDDPALIVTRATEAAKFGEGASGWSGYNLCTNNCETFAYWCSTGRRQVLSRQAARGLVGAGVVAAGASAVVSAGGFASAGAAATVLVPRGVRGVQRGVKAIEWATGVAVVAVAAADVVSTLVTRAPVERNLNLRSGST 323
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BLAST of mRNA_E-fasciculatus_F_contig10671.533.1 vs. uniprot
Match: A0A6H5JNU1_9PHAE (LRAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU1_9PHAE)

HSP 1 Score: 385 bits (990), Expect = 1.490e-132
Identity = 209/228 (91.67%), Postives = 211/228 (92.54%), Query Frame = 0 
Query:    4 QIYVYRGVIQHHGIVTHVPVAGRAGGASAASSPPSGGVRVVHFDSNCDGVESTSLEIFLNGGTLRRATYGASAWSTGLDYGASYGCAADDPALIVTRATEAAKFGEGASGWSGYNLCTNNCETFAYWCSTGRRQVLSRQAARGLVGAGVVAAGASAVVSAGGFASAGAAATVLVPRGVRGVQRGVKAIEWATGVAVVAVAAADVVSTLVTRAPVERNLNLRSGSTTVS 231
            QIYVYRGVIQHHGIVTHVPV GR GG           VRVVHFDSNCDGVESTSLE FLNGGTLRRATYGASAWSTGLDYGASYGCAADDPALIVTRATEAAKFGEGASGWSGYNLCTNNCETFAYWCSTGRRQVLSRQA RGLVGAGVVAAGASAVVSAGGFASAGAAATVLVPRG+RGVQRGVKAIEWATG+AVVAVAAADVVSTLVTRAPVERNLNLRSGST  S
Sbjct:  126 QIYVYRGVIQHHGIVTHVPVPGRVGG-----------VRVVHFDSNCDGVESTSLETFLNGGTLRRATYGASAWSTGLDYGASYGCAADDPALIVTRATEAAKFGEGASGWSGYNLCTNNCETFAYWCSTGRRQVLSRQATRGLVGAGVVAAGASAVVSAGGFASAGAAATVLVPRGLRGVQRGVKAIEWATGLAVVAVAAADVVSTLVTRAPVERNLNLRSGSTVAS 342
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BLAST of mRNA_E-fasciculatus_F_contig10671.533.1 vs. uniprot
Match: S8C1G6_9LAMI (LRAT domain-containing protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8C1G6_9LAMI)

HSP 1 Score: 51.2 bits (121), Expect = 8.100e-5
Identity = 38/91 (41.76%), Postives = 46/91 (50.55%), Query Frame = 0 
Query:   45 HFDSNCDGVESTSLEIFLNGGTLRRATYGAS-AWSTGLDYGASYGCAADDPALIVTRATEAAKFGEGASGWSGYNLCTNNCETFAYWCSTG 134
            H  SN +G++S+ L  FLNGG L R  YG S A+ +    G    C   DP   V R   A  F E  +G+  YNL  NNCE FA  C  G
Sbjct:   41 HRPSN-NGLKSSCLACFLNGGKLHRYQYGVSDAYLSAQGRGGHCTCTKSDPPETVVR--RAIFFLE--NGYGDYNLVINNCEDFALSCKKG 126
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10671.533.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LNF0_ECTSI2.320e-13393.33LRAT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JNU1_9PHAE1.490e-13291.67LRAT domain-containing protein n=1 Tax=Ectocarpus ... [more]
S8C1G6_9LAMI8.100e-541.76LRAT domain-containing protein (Fragment) n=1 Tax=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007053LRAT domainPFAMPF04970LRATcoord: 4..135
e-value: 1.3E-11
score: 44.9
NoneNo IPR availablePANTHERPTHR46137FAMILY NOT NAMEDcoord: 46..211
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 174..192
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 193..212
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 146..173
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 213..232
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..145
NoneNo IPR availableTMHMMTMhelixcoord: 146..168
NoneNo IPR availableTMHMMTMhelixcoord: 190..212

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10671contigE-fasciculatus_F_contig10671:2980..4671 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10671.533.1mRNA_E-fasciculatus_F_contig10671.533.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig10671 2980..4671 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig10671.533.1 ID=prot_E-fasciculatus_F_contig10671.533.1|Name=mRNA_E-fasciculatus_F_contig10671.533.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=233bp
MHRQIYVYRGVIQHHGIVTHVPVAGRAGGASAASSPPSGGVRVVHFDSNC
DGVESTSLEIFLNGGTLRRATYGASAWSTGLDYGASYGCAADDPALIVTR
ATEAAKFGEGASGWSGYNLCTNNCETFAYWCSTGRRQVLSRQAARGLVGA
GVVAAGASAVVSAGGFASAGAAATVLVPRGVRGVQRGVKAIEWATGVAVV
AVAAADVVSTLVTRAPVERNLNLRSGSTTVSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007053LRAT_dom