mRNA_E-fasciculatus_F_contig10671.533.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10671.533.1
Unique NamemRNA_E-fasciculatus_F_contig10671.533.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10671.533.1 vs. uniprot
Match: D8LNF0_ECTSI (LRAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF0_ECTSI)

HSP 1 Score: 388 bits (996), Expect = 2.320e-133
Identity = 210/225 (93.33%), Postives = 211/225 (93.78%), Query Frame = 1 
Query:   10 QIYVYRGVIQHHGIVTHVPVAGRAGGASAASSPPSGGVRVVHFDSNCDGVESTSLEIFLNGGTLRRATYGASAWSTGLDYGASYGCAADDPALIVTRATEAAKFGEGASGWSGYNLCTNNCETFAYWCSTGRRQVLSRQAARGLVGAGVVAAGASAVVSAGGFASAGAAATVLVPRGVRGVQRGVKAIEWATGVAVVAVAAADVVSTLVTRAPVERNLNLRSGST 684
            Q+YVYRGVIQHHGIVTHVPV GRAGG           VRVVHFDSNCDGVESTSLE FLNGGTLRRATYGASAWSTGLDYGASYGCA DDPALIVTRATEAAKFGEGASGWSGYNLCTNNCETFAYWCSTGRRQVLSRQAARGLVGAGVVAAGASAVVSAGGFASAGAAATVLVPRGVRGVQRGVKAIEWATGVAVVAVAAADVVSTLVTRAPVERNLNLRSGST
Sbjct:  110 QVYVYRGVIQHHGIVTHVPVPGRAGG-----------VRVVHFDSNCDGVESTSLETFLNGGTLRRATYGASAWSTGLDYGASYGCATDDPALIVTRATEAAKFGEGASGWSGYNLCTNNCETFAYWCSTGRRQVLSRQAARGLVGAGVVAAGASAVVSAGGFASAGAAATVLVPRGVRGVQRGVKAIEWATGVAVVAVAAADVVSTLVTRAPVERNLNLRSGST 323
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BLAST of mRNA_E-fasciculatus_F_contig10671.533.1 vs. uniprot
Match: A0A6H5JNU1_9PHAE (LRAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU1_9PHAE)

HSP 1 Score: 385 bits (990), Expect = 1.490e-132
Identity = 209/228 (91.67%), Postives = 211/228 (92.54%), Query Frame = 1 
Query:   10 QIYVYRGVIQHHGIVTHVPVAGRAGGASAASSPPSGGVRVVHFDSNCDGVESTSLEIFLNGGTLRRATYGASAWSTGLDYGASYGCAADDPALIVTRATEAAKFGEGASGWSGYNLCTNNCETFAYWCSTGRRQVLSRQAARGLVGAGVVAAGASAVVSAGGFASAGAAATVLVPRGVRGVQRGVKAIEWATGVAVVAVAAADVVSTLVTRAPVERNLNLRSGSTTVS 693
            QIYVYRGVIQHHGIVTHVPV GR GG           VRVVHFDSNCDGVESTSLE FLNGGTLRRATYGASAWSTGLDYGASYGCAADDPALIVTRATEAAKFGEGASGWSGYNLCTNNCETFAYWCSTGRRQVLSRQA RGLVGAGVVAAGASAVVSAGGFASAGAAATVLVPRG+RGVQRGVKAIEWATG+AVVAVAAADVVSTLVTRAPVERNLNLRSGST  S
Sbjct:  126 QIYVYRGVIQHHGIVTHVPVPGRVGG-----------VRVVHFDSNCDGVESTSLETFLNGGTLRRATYGASAWSTGLDYGASYGCAADDPALIVTRATEAAKFGEGASGWSGYNLCTNNCETFAYWCSTGRRQVLSRQATRGLVGAGVVAAGASAVVSAGGFASAGAAATVLVPRGLRGVQRGVKAIEWATGLAVVAVAAADVVSTLVTRAPVERNLNLRSGSTVAS 342
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BLAST of mRNA_E-fasciculatus_F_contig10671.533.1 vs. uniprot
Match: S8C1G6_9LAMI (LRAT domain-containing protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8C1G6_9LAMI)

HSP 1 Score: 51.2 bits (121), Expect = 8.100e-5
Identity = 38/91 (41.76%), Postives = 46/91 (50.55%), Query Frame = 1 
Query:  133 HFDSNCDGVESTSLEIFLNGGTLRRATYGAS-AWSTGLDYGASYGCAADDPALIVTRATEAAKFGEGASGWSGYNLCTNNCETFAYWCSTG 402
            H  SN +G++S+ L  FLNGG L R  YG S A+ +    G    C   DP   V R   A  F E  +G+  YNL  NNCE FA  C  G
Sbjct:   41 HRPSN-NGLKSSCLACFLNGGKLHRYQYGVSDAYLSAQGRGGHCTCTKSDPPETVVR--RAIFFLE--NGYGDYNLVINNCEDFALSCKKG 126
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10671.533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LNF0_ECTSI2.320e-13393.33LRAT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JNU1_9PHAE1.490e-13291.67LRAT domain-containing protein n=1 Tax=Ectocarpus ... [more]
S8C1G6_9LAMI8.100e-541.76LRAT domain-containing protein (Fragment) n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10671contigE-fasciculatus_F_contig10671:2980..4671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLRAT-like domain
Ec32 orthologEc-04_004100.1
Exons3
Model size699
Cds size699
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10671.533.1prot_E-fasciculatus_F_contig10671.533.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10671 2980..4671 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927565.2423887-CDS-E-fasciculatus_F_contig10671:2979..32741622927565.2423887-CDS-E-fasciculatus_F_contig10671:2979..3274Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10671 2980..3274 -
1695995598.599159-CDS-E-fasciculatus_F_contig10671:2979..32741695995598.599159-CDS-E-fasciculatus_F_contig10671:2979..3274Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10671 2980..3274 -
1622927565.2546823-CDS-E-fasciculatus_F_contig10671:3695..39101622927565.2546823-CDS-E-fasciculatus_F_contig10671:3695..3910Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10671 3696..3910 -
1695995598.6068835-CDS-E-fasciculatus_F_contig10671:3695..39101695995598.6068835-CDS-E-fasciculatus_F_contig10671:3695..3910Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10671 3696..3910 -
1622927565.2645855-CDS-E-fasciculatus_F_contig10671:4482..46711622927565.2645855-CDS-E-fasciculatus_F_contig10671:4482..4671Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10671 4483..4671 -
1695995598.6169496-CDS-E-fasciculatus_F_contig10671:4482..46711695995598.6169496-CDS-E-fasciculatus_F_contig10671:4482..4671Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10671 4483..4671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10671.533.1

>prot_E-fasciculatus_F_contig10671.533.1 ID=prot_E-fasciculatus_F_contig10671.533.1|Name=mRNA_E-fasciculatus_F_contig10671.533.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=233bp
MHRQIYVYRGVIQHHGIVTHVPVAGRAGGASAASSPPSGGVRVVHFDSNC
DGVESTSLEIFLNGGTLRRATYGASAWSTGLDYGASYGCAADDPALIVTR
ATEAAKFGEGASGWSGYNLCTNNCETFAYWCSTGRRQVLSRQAARGLVGA
GVVAAGASAVVSAGGFASAGAAATVLVPRGVRGVQRGVKAIEWATGVAVV
AVAAADVVSTLVTRAPVERNLNLRSGSTTVSS*
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mRNA from alignment at E-fasciculatus_F_contig10671:2980..4671-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10671.533.1 ID=mRNA_E-fasciculatus_F_contig10671.533.1|Name=mRNA_E-fasciculatus_F_contig10671.533.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1692bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10671:2980..4671- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCACCGGCAGATCTACGTGTACCGCGGGGTCATCCAGCACCACGGGAT
CGTGACGCACGTGCCGGTCGCCGGACGAGCCGGCGGGGCATCGGCCGCGT
CGTCGCCGCCCTCTGGAGGCGTGCGGGTCGTGCACTTCGACTCCAACTGC
GACGGCGTGGAATCGACAAGCCTGGAGATCTTCCTGAACGTGGGTTCTGG
TGATGCAGATAGATGGTTGAAATTTCGAGGTTGTGTAGTGACTGCTGTTT
TACGGCCGTTGCGCTAGATTTGTTCGTGTACCTGTTATGCCGGACTGATT
GCCCGCGCGGAGCACTCTCTCGAAAGACCCCCGCGGCAGCAGTGCTTACG
AGCTCACCGTCGCACTTGCCAGACTTGTTGTCCAGCAAGGGGTATGGGGG
CAAGGTTCGTTACCTGTCCAGGTTGCATGTGTCAAAAAAATTCTGGATTT
GCACTGCCACTCGGTCACCCGGCTGCCGGCCCCCGATAGCCCGGGGGAAC
CGGCTCATCGGCCAGCAGGCAGCAAACGCTTGGGGTTGGCTCTCGCACTC
GCGCGCCACGGGCTTGTTCCCGCCGCCTCGACCCCCGAGGGGGACGAGGC
AGGTTCGGCAACAAACCTCGGAGCTAGTTACGACAAGGGTGGAACCCCAA
ACCTCGTTGATGAAAAAGCGTGCTAGAACGCTAGATCACACACACGACTT
AACGCCCCAAAAAACACCACCTCATTTCTCCGGATTAACCCCTGCATCAT
CATGCGTTCAGGGCGGCACCCTGAGAAGAGCCACGTACGGCGCAAGCGCG
TGGTCGACCGGCCTCGACTACGGAGCGAGCTACGGCTGCGCCGCGGACGA
CCCTGCGCTTATCGTGACCCGCGCCACGGAGGCGGCCAAGTTTGGCGAGG
GCGCCAGCGGTTGGAGCGGGTACAACCTGTGCACGAACAACTGCGAGACA
TTCGCGTACTGGTGCAGCACCGGGAGGTGGGGATTCTTTTGTGTGAATCT
GGGGCTTGTGGCGGTAAATTTATATCGTGTTGATTTTTTTTAGTGTTATC
TTGTTGCCAGCCGTACCGCTGCCTTTCTGATACTGCTAGAGCACTGCGGT
ATTTGTTTTTGCTCTCCTTTTGTCTTCTGGAAGAGGGTTGGCACCATGCC
CCCTCTCCAATAGCGCCGCGAGAGGCATTCCGTACAGACGCGCTCCGCCT
GATGGACGGTCAAGTGACCATCTGCTTTGTAAACGCGTGTCTGTTGGCAC
CCCCCCCCATATGCGTACCCCCCTTTTTGTGCACAAGGGTCCTACAATAA
CTTTCCTCCTCTGTGTCCCGTTTCCATTCACCCGAAAAAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAGGCG
ACAGGTGCTCTCCCGCCAGGCGGCCCGGGGTCTCGTGGGGGCAGGCGTCG
TGGCCGCGGGCGCGTCCGCCGTGGTGTCTGCCGGAGGATTCGCCTCCGCG
GGAGCCGCCGCCACCGTGCTCGTCCCCCGCGGCGTGCGCGGGGTCCAGCG
GGGCGTGAAGGCGATCGAGTGGGCGACGGGGGTAGCGGTCGTGGCCGTGG
CGGCCGCAGACGTCGTGTCTACCCTTGTGACCAGGGCCCCCGTCGAGCGC
AACCTCAACCTTCGGAGCGGTTCGACGACGGTTTCAAGCTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10671:2980..4671-

>mRNA_E-fasciculatus_F_contig10671.533.1 ID=mRNA_E-fasciculatus_F_contig10671.533.1|Name=mRNA_E-fasciculatus_F_contig10671.533.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1398bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10671:2980..4671- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCACCGGCAGATCTACGTGTACCGCGGGGTCATCCAGCACCACGGGAT
CGTGACGCACGTGCCGGTCGCCGGACGAGCCGGCGGGGCATCGGCCGCGT
CGTCGCCGCCCTCTGGAGGCGTGCGGGTCGTGCACTTCGACTCCAACTGC
GACGGCGTGGAATCGACAAGCCTGGAGATCTTCCTGAACATGCACCGGCA
GATCTACGTGTACCGCGGGGTCATCCAGCACCACGGGATCGTGACGCACG
TGCCGGTCGCCGGACGAGCCGGCGGGGCATCGGCCGCGTCGTCGCCGCCC
TCTGGAGGCGTGCGGGTCGTGCACTTCGACTCCAACTGCGACGGCGTGGA
ATCGACAAGCCTGGAGATCTTCCTGAACGGCGGCACCCTGAGAAGAGCCA
CGTACGGCGCAAGCGCGTGGTCGACCGGCCTCGACTACGGAGCGAGCTAC
GGCTGCGCCGCGGACGACCCTGCGCTTATCGTGACCCGCGCCACGGAGGC
GGCCAAGTTTGGCGAGGGCGCCAGCGGTTGGAGCGGGTACAACCTGTGCA
CGAACAACTGCGAGACATTCGCGTACTGGTGCAGCACCGGGAGGGCGGCA
CCCTGAGAAGAGCCACGTACGGCGCAAGCGCGTGGTCGACCGGCCTCGAC
TACGGAGCGAGCTACGGCTGCGCCGCGGACGACCCTGCGCTTATCGTGAC
CCGCGCCACGGAGGCGGCCAAGTTTGGCGAGGGCGCCAGCGGTTGGAGCG
GGTACAACCTGTGCACGAACAACTGCGAGACATTCGCGTACTGGTGCAGC
ACCGGGAGGCGACAGGTGCTCTCCCGCCAGGCGGCCCGGGGTCTCGTGGG
GGCAGGCGTCGTGGCCGCGGGCGCGTCCGCCGTGGTGTCTGCCGGAGGAT
TCGCCTCCGCGGGAGCCGCCGCCACCGTGCTCGTCCCCCGCGGCGTGCGC
GGGGTCCAGCGGGGCGTGAAGGCGATCGAGTGGGCGACGGGGGTAGCGGT
CGTGGCCGTGGCGGCCGCAGACGTCGTGTCTACCCTTGTGACCAGGGCCC
CCGTCGAGCGCAACCTCAACCTTCGGAGCGGTTCGACGACGGTTTCAAGC
TAGGCGACAGGTGCTCTCCCGCCAGGCGGCCCGGGGTCTCGTGGGGGCAG
GCGTCGTGGCCGCGGGCGCGTCCGCCGTGGTGTCTGCCGGAGGATTCGCC
TCCGCGGGAGCCGCCGCCACCGTGCTCGTCCCCCGCGGCGTGCGCGGGGT
CCAGCGGGGCGTGAAGGCGATCGAGTGGGCGACGGGGGTAGCGGTCGTGG
CCGTGGCGGCCGCAGACGTCGTGTCTACCCTTGTGACCAGGGCCCCCGTC
GAGCGCAACCTCAACCTTCGGAGCGGTTCGACGACGGTTTCAAGCTAG
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