mRNA_E-fasciculatus_F_contig16351.4304.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16351.4304.1
Unique NamemRNA_E-fasciculatus_F_contig16351.4304.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16351.4304.1 vs. uniprot
Match: D8LQY8_ECTSI (SCP-domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY8_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 1.260e-74
Identity = 108/118 (91.53%), Postives = 112/118 (94.92%), Query Frame = 1 
Query:    1 MCYESCVHEGSSYFATEDGSRCWCSLESHLDYSSDGVGVCNTWCGGDGSTTCGGSDGWSRDFYKIETADATLGVRAAGDGGSSSGDPLDRLLELHNAARCMHATGPLEFAEPVAATAK 354
            MCYESCVHEGSSYFAT+DGSRCWCSLESH DYSS GVGVC+TWCGGDGSTTCGGSDG SRDFYKIET +ATLGV AAGDG S+SGDPLDRLLELHNAARCMHATGPLEFAEPVAATAK
Sbjct:   14 MCYESCVHEGSSYFATQDGSRCWCSLESHFDYSSGGVGVCDTWCGGDGSTTCGGSDGLSRDFYKIETGEATLGVSAAGDGVSNSGDPLDRLLELHNAARCMHATGPLEFAEPVAATAK 131
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BLAST of mRNA_E-fasciculatus_F_contig16351.4304.1 vs. uniprot
Match: A0A6H5KE93_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE93_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 2.690e-45
Identity = 75/87 (86.21%), Postives = 79/87 (90.80%), Query Frame = 1 
Query:   94 YSSDGVGVCNTWCGGDGSTTCGGSDGWSRDFYKIETADATLGVRAAGDGGSSSGDPLDRLLELHNAARCMHATGPLEFAEPVAATAK 354
            Y   GVGVC+TWCGGDGSTTCGGSDG SRD+YKIET +ATLGV AAGDG S+S DPLDRLLELHNAARCMHATGPLEFAEPVAATAK
Sbjct:   28 YVWGGVGVCDTWCGGDGSTTCGGSDGLSRDYYKIETGEATLGVSAAGDGASNSADPLDRLLELHNAARCMHATGPLEFAEPVAATAK 114
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16351.4304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQY8_ECTSI1.260e-7491.53SCP-domain containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KE93_9PHAE2.690e-4586.21SCP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16351contigE-fasciculatus_F_contig16351:105..2414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue1.9e-11
Seed eggNOG ortholog2880.D8LED4
EggNOG free text desc.Metallo-peptidase family M12B Reprolysin-like
EggNOG OGs2E9TD@1,2SG44@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSCP / PR1-domain containing protein
Ec32 orthologEc-07_002140.1
Exons3
Model size354
Cds size354
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16351.4304.1prot_E-fasciculatus_F_contig16351.4304.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16351 105..2414 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928104.7907615-CDS-E-fasciculatus_F_contig16351:104..2051622928104.7907615-CDS-E-fasciculatus_F_contig16351:104..205Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16351 105..205 +
1695995821.4517667-CDS-E-fasciculatus_F_contig16351:104..2051695995821.4517667-CDS-E-fasciculatus_F_contig16351:104..205Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16351 105..205 +
1622928104.8338325-CDS-E-fasciculatus_F_contig16351:1324..15191622928104.8338325-CDS-E-fasciculatus_F_contig16351:1324..1519Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16351 1325..1519 +
1695995821.4623876-CDS-E-fasciculatus_F_contig16351:1324..15191695995821.4623876-CDS-E-fasciculatus_F_contig16351:1324..1519Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16351 1325..1519 +
1622928104.8700576-CDS-E-fasciculatus_F_contig16351:2356..24141622928104.8700576-CDS-E-fasciculatus_F_contig16351:2356..2414Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16351 2357..2414 +
1695995821.4725792-CDS-E-fasciculatus_F_contig16351:2356..24141695995821.4725792-CDS-E-fasciculatus_F_contig16351:2356..2414Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16351 2357..2414 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16351.4304.1

>prot_E-fasciculatus_F_contig16351.4304.1 ID=prot_E-fasciculatus_F_contig16351.4304.1|Name=mRNA_E-fasciculatus_F_contig16351.4304.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=118bp
MCYESCVHEGSSYFATEDGSRCWCSLESHLDYSSDGVGVCNTWCGGDGST
TCGGSDGWSRDFYKIETADATLGVRAAGDGGSSSGDPLDRLLELHNAARC
MHATGPLEFAEPVAATAK
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mRNA from alignment at E-fasciculatus_F_contig16351:105..2414+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16351.4304.1 ID=mRNA_E-fasciculatus_F_contig16351.4304.1|Name=mRNA_E-fasciculatus_F_contig16351.4304.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2310bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16351:105..2414+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGCTACGAGAGCTGCGTCCATGAGGGGTCGTCTTACTTTGCCACGGA
GGACGGCAGCCGGTGTTGGTGCTCGCTGGAATCACATCTTGACTACAGCT
CGTGAGTCAAAACTCTTGGGAGTTGGGGGGGCGTACTCATATTTAGCATG
CCTTAGCGGTTAAAACATTGACCTCTAGTCCTCGAGAGGACGGGGCATGT
GGGGGATATTCAATCTCTGGGGGGTGCGCGGGAAGGGAACGGTTGGGTGT
CTTGGTTTGGGGGGGCGGGGGGGTATCCATGGCCATTCATGCCCATGTTC
GTGAATATCAAAAGAAGCTCCGTTCCCGACACCAGCTGGGACGGGACCGG
TGATCGGACTTTCGCCTACAAGGCGACCATAGCGGCAGCAACAGCACTTC
TGGACCATGCAGAGGAGCGTGGAGGGTCGTCAAATGTATTTTGGCGTAAG
AACATATTAGTAGCTTCTCGGCTGGGGGGGTCTAGTGCACGAGGGTGGAG
GCGGCAGGGAGGATACGATGGGGGGCGTGGGGATTTAGGACACCTGTTGG
ATCTGGCTGCCCAGCTGGGTTGTTCACTTTGAATTGCTTTGGTGCGGGGG
GGCGGGCACCGCGGTATGCATCCCTCCGGCGAATCATGTACCAAGCATTA
CCACCTGTGGGGTATTACCGAGCAGGAGGACAGCAGCACCAGCATCAGCG
GCGGTCATGTTTGGCTTTCGTTCTAATTTTTCGGACCGTGCTCTCGTCGT
TTGTCCACCTCCCATGCACACCTAGTGGCCCCAACCCCGAAGCACACGAA
TCGGATGGATAGCACGGACCGTAATTCCGATCTCCTAGGGCGCCCGCTTG
TCAGGGGAGGCCAGGTGGATCGCACAAAGATATTGTATGTTATGTGTAGT
ACCTGCTTGTGTCCCGCTGAGCTTGGGGTTATGTGTAGTACCTTCTTGTG
TCCCGCTGAGCGTGGGGTCTTTTTTGAAGCAATAGCACAACCTCTGTCGT
TCTCAAGTTAGAGACACATCCTCACGCCCCTCCCCTTCTCTCTGTGCGGC
ATCTGTAACTCTGTAACGGGTCGCCAACAAAACAACATAATTGACATTCG
TAACAACGCCCTGGTACGATGTGTGTCATCACCACACCGCCAACGCGTGA
CCAATGTTCGGGTTTTCTTCACCCGCCCCCGTCGAAAAAACAAACAAACG
AAACCGTCGCCAAAACTCAGGGACGGAGTCGGTGTTTGCAACACCTGGTG
CGGGGGGGACGGCAGCACTACCTGTGGAGGGTCGGACGGGTGGTCGCGGG
ACTTTTACAAGATAGAAACCGCCGATGCCACCTTAGGCGTCAGGGCCGCG
GGGGACGGCGGCAGCAGCAGCGGCGATCCGTTGGACAGGCTGCTCGAGCT
CCACAACGCGGCGAGGTGACTTTTTTTTTTTTTGGGACCCGATCCGTCGG
TGGTTGTGGGGGCGGTTTTTTTTGTGGGACCCGATCCGGCGGTGGTTGTG
GGGGTGTTTTTTTTTGTTGTGCACCTCGAGAGTCAGTCGATACCCCCCGT
TGCTGGCGCTCGCTCTCTGGCAGGCTTTCTGATGTTTTGGTGATGCACTC
GACCGGCATTTTTGTTGTGTTTGATTCGGTGCCTGTTTCTTTTCCTTTCC
GACGCACCATTACCATTCACATCCGAGCTGAGATGCACCCCGTTTGCGCT
AGTGGAAGGCGTCGTACAGCGGGGCATCCTGGCATCCACGTGTTTGACCA
CCGGTTGTTTTTGTTTTTTTGTTGGTTGGTGTTGTTGCCTTGTTTTTTTT
TGCTGCTGTTGGTACTCTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCCATTTGTTCGGACCGCATGCCTGAGCTCCTGAAACTC
TTGCCAGTCGTCGGCATGGGATACCGCGTATTCACGAAAAATACCGGGTG
CCGGGACCCCCGGAACGGTACCGGGCACGAAACACACAGCCTTGTGTTTC
TGTCGAGATGCGTATGACACTTCCGTGTGATCATATCAACGGACGGTGGT
ACGTATATAGTGCCGTTCATTCGAAGTTGAAGGCAGATGGGACTCTTGAC
GATAGTTCTATACTGGAATTTTTCATCTTTTTGAGGGAGGGGGACAGGGT
CGCAGGAGGAGGCTAGGTGCGGGGTTACTTCTATTGCGCTCCTGTTGTTG
TGCACCAAAATCTGTTGACAAGGCGTTGCTTCTATCTCCCTGTGCGATGC
AGGTGCATGCACGCCACGGGACCCCTGGAATTCGCCGAGCCAGTTGCAGC
GACGGCGAAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16351:105..2414+

>mRNA_E-fasciculatus_F_contig16351.4304.1 ID=mRNA_E-fasciculatus_F_contig16351.4304.1|Name=mRNA_E-fasciculatus_F_contig16351.4304.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=708bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16351:105..2414+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGCTACGAGAGCTGCGTCCATGAGGGGTCGTCTTACTTTGCCACGGA
GGACGGCAGCCGGTGTTGGTGCTCGCTGGAATCACATCTTGACTACAGCT
CATGTGCTACGAGAGCTGCGTCCATGAGGGGTCGTCTTACTTTGCCACGG
AGGACGGCAGCCGGTGTTGGTGCTCGCTGGAATCACATCTTGACTACAGC
TCGGACGGAGTCGGTGTTTGCAACACCTGGTGCGGGGGGGACGGCAGCAC
TACCTGTGGAGGGTCGGACGGGTGGTCGCGGGACTTTTACAAGATAGAAA
CCGCCGATGCCACCTTAGGCGTCAGGGCCGCGGGGGACGGCGGCAGCAGC
AGCGGCGATCCGTTGGACAGGCTGCTCGAGCTCCACAACGCGGCGAGGGA
CGGAGTCGGTGTTTGCAACACCTGGTGCGGGGGGGACGGCAGCACTACCT
GTGGAGGGTCGGACGGGTGGTCGCGGGACTTTTACAAGATAGAAACCGCC
GATGCCACCTTAGGCGTCAGGGCCGCGGGGGACGGCGGCAGCAGCAGCGG
CGATCCGTTGGACAGGCTGCTCGAGCTCCACAACGCGGCGAGGTGCATGC
ACGCCACGGGACCCCTGGAATTCGCCGAGCCAGTTGCAGCGACGGCGAAG
GTGCATGCACGCCACGGGACCCCTGGAATTCGCCGAGCCAGTTGCAGCGA
CGGCGAAG
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