mRNA_E-fasciculatus_F_contig16305.4283.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16305.4283.1
Unique NamemRNA_E-fasciculatus_F_contig16305.4283.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16305.4283.1 vs. uniprot
Match: A0A6H5L7I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7I9_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 9.780e-55
Identity = 120/204 (58.82%), Postives = 125/204 (61.27%), Query Frame = 1 
Query:    1 ERILSYDPDQMRLNWISTGLRRKPGSMLAKDIDEVTCEGTSVTIIYSETTATGAPAPVRRRSLSPFRRSSTLSPVGHEGVGGGSQASKLGLDRRRKVYSTSKERDAQILKELLLFVRRKAISDFAAAVSRLXXXXXXXXXXXXXXXXXXXXXFVAENNGGNDNLTDSAIFGSERGRGGRSSTGPNTTRSTGVFTKSKGRRWSVK 612
            ERILSYDPDQMRLNWISTGLRRK GSMLAKDI EVTCEGTS                                            ASKLGLDRRRKVYSTS+ERDAQILKELLLFVRR+AIS+FAAAVSRL                      VAEN GGN NL D+AIFG+ERGRGGR   G N T  TGVFTKSKGRR SVK
Sbjct:  202 ERILSYDPDQMRLNWISTGLRRKTGSMLAKDIGEVTCEGTS--------------------------------------------ASKLGLDRRRKVYSTSQERDAQILKELLLFVRRQAISNFAAAVSRLAAAANSPAASTTGVDSAIC--LVAEN-GGNSNLIDTAIFGNERGRGGREPAGSNVTPITGVFTKSKGRRRSVK 358
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16305.4283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L7I9_9PHAE9.780e-5558.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16305contigE-fasciculatus_F_contig16305:1824..2657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size615
Cds size585
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16305.4283.1prot_E-fasciculatus_F_contig16305.4283.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16305 1824..2627 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928102.339029-CDS-E-fasciculatus_F_contig16305:1823..23481622928102.339029-CDS-E-fasciculatus_F_contig16305:1823..2348Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16305 1824..2348 -
1695995820.3946886-CDS-E-fasciculatus_F_contig16305:1823..23481695995820.3946886-CDS-E-fasciculatus_F_contig16305:1823..2348Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16305 1824..2348 -
1622928102.3592806-CDS-E-fasciculatus_F_contig16305:2567..26271622928102.3592806-CDS-E-fasciculatus_F_contig16305:2567..2627Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16305 2568..2627 -
1695995820.406151-CDS-E-fasciculatus_F_contig16305:2567..26271695995820.406151-CDS-E-fasciculatus_F_contig16305:2567..2627Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16305 2568..2627 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928102.381881-UTR-E-fasciculatus_F_contig16305:2627..26571622928102.381881-UTR-E-fasciculatus_F_contig16305:2627..2657Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16305 2628..2657 -
1695995820.4263196-UTR-E-fasciculatus_F_contig16305:2627..26571695995820.4263196-UTR-E-fasciculatus_F_contig16305:2627..2657Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16305 2628..2657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16305.4283.1

>prot_E-fasciculatus_F_contig16305.4283.1 ID=prot_E-fasciculatus_F_contig16305.4283.1|Name=mRNA_E-fasciculatus_F_contig16305.4283.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=195bp
MRLNWISTGLRRKPGSMLAKDIDEVTCEGTSVTIIYSETTATGAPAPVRR
RSLSPFRRSSTLSPVGHEGVGGGSQASKLGLDRRRKVYSTSKERDAQILK
ELLLFVRRKAISDFAAAVSRLAAAANNSPAASVTSSVDSTTSFVAENNGG
NDNLTDSAIFGSERGRGGRSSTGPNTTRSTGVFTKSKGRRWSVK*
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mRNA from alignment at E-fasciculatus_F_contig16305:1824..2657-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16305.4283.1 ID=mRNA_E-fasciculatus_F_contig16305.4283.1|Name=mRNA_E-fasciculatus_F_contig16305.4283.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=834bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16305:1824..2657- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAACGGATCTTGTCGTATGACCCGGACCAGATGCGGCTGAACTGGATATC
GACCGGCCTGCGACGCAAACCGGGGAGCATGCTGGCCAAGGTGAATGAAA
CTGCGAGTGAGCGCGGCCGGTTCTCGAGAATATGCGCTGGCGCTTTTTCT
ATGAAGGAAGCCTGTTCGATTTCCCTCCTGTGCGCTTTGTCCAGCTGGGC
ATCTACCCGCTCTTTTCAAGAGCACAACGCCAACACCCAACAGAACCAAC
AACAGCAGCAGTGTTGACAACGCACTTGTGCAACTTTCAATCTCTTCACT
CTGCCGCAGGACATCGACGAGGTTACCTGCGAGGGCACGTCGGTGACCAT
AATCTACTCCGAGACCACTGCCACCGGCGCCCCCGCCCCCGTACGGCGAC
GAAGCCTGTCTCCCTTTCGCCGCTCCTCTACATTGTCGCCTGTCGGGCAC
GAGGGGGTGGGAGGGGGGAGTCAGGCATCGAAACTTGGCCTGGATCGGCG
GCGGAAGGTGTATTCCACCTCGAAGGAGCGGGACGCACAGATCCTGAAGG
AGCTGCTGCTGTTCGTGCGCCGGAAGGCTATCTCCGATTTCGCGGCGGCG
GTGTCGAGGCTAGCGGCAGCCGCCAATAATTCTCCCGCTGCTTCCGTCAC
CTCCTCCGTGGATTCTACTACTAGCTTCGTTGCCGAAAACAACGGAGGAA
ATGATAATCTTACCGATTCCGCCATCTTTGGCAGTGAGCGTGGGCGAGGA
GGGCGGTCGTCGACGGGGCCCAACACAACACGTAGCACTGGGGTGTTCAC
AAAGAGTAAAGGGAGGCGATGGTCGGTCAAGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16305:1824..2657-

>mRNA_E-fasciculatus_F_contig16305.4283.1 ID=mRNA_E-fasciculatus_F_contig16305.4283.1|Name=mRNA_E-fasciculatus_F_contig16305.4283.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1170bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16305:1824..2657- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGGCTGAACTGGATATCGACCGGCCTGCGACGCAAACCGGGGAGCAT
GCTGGCCAAGATGCGGCTGAACTGGATATCGACCGGCCTGCGACGCAAAC
CGGGGAGCATGCTGGCCAAGGACATCGACGAGGTTACCTGCGAGGGCACG
TCGGTGACCATAATCTACTCCGAGACCACTGCCACCGGCGCCCCCGCCCC
CGTACGGCGACGAAGCCTGTCTCCCTTTCGCCGCTCCTCTACATTGTCGC
CTGTCGGGCACGAGGGGGTGGGAGGGGGGAGTCAGGCATCGAAACTTGGC
CTGGATCGGCGGCGGAAGGTGTATTCCACCTCGAAGGAGCGGGACGCACA
GATCCTGAAGGAGCTGCTGCTGTTCGTGCGCCGGAAGGCTATCTCCGATT
TCGCGGCGGCGGTGTCGAGGCTAGCGGCAGCCGCCAATAATTCTCCCGCT
GCTTCCGTCACCTCCTCCGTGGATTCTACTACTAGCTTCGTTGCCGAAAA
CAACGGAGGAAATGATAATCTTACCGATTCCGCCATCTTTGGCAGTGAGC
GTGGGCGAGGAGGGCGGTCGTCGACGGGGCCCAACACAACACGTAGCACT
GGGGTGTTCACAAAGAGTAAAGGGAGGCGATGGTCGGTCAAGTGAGACAT
CGACGAGGTTACCTGCGAGGGCACGTCGGTGACCATAATCTACTCCGAGA
CCACTGCCACCGGCGCCCCCGCCCCCGTACGGCGACGAAGCCTGTCTCCC
TTTCGCCGCTCCTCTACATTGTCGCCTGTCGGGCACGAGGGGGTGGGAGG
GGGGAGTCAGGCATCGAAACTTGGCCTGGATCGGCGGCGGAAGGTGTATT
CCACCTCGAAGGAGCGGGACGCACAGATCCTGAAGGAGCTGCTGCTGTTC
GTGCGCCGGAAGGCTATCTCCGATTTCGCGGCGGCGGTGTCGAGGCTAGC
GGCAGCCGCCAATAATTCTCCCGCTGCTTCCGTCACCTCCTCCGTGGATT
CTACTACTAGCTTCGTTGCCGAAAACAACGGAGGAAATGATAATCTTACC
GATTCCGCCATCTTTGGCAGTGAGCGTGGGCGAGGAGGGCGGTCGTCGAC
GGGGCCCAACACAACACGTAGCACTGGGGTGTTCACAAAGAGTAAAGGGA
GGCGATGGTCGGTCAAGTGA
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