mRNA_E-fasciculatus_F_contig16233.4244.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16233.4244.1
Unique NamemRNA_E-fasciculatus_F_contig16233.4244.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16233.4244.1 vs. uniprot
Match: D7FVM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM3_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 2.410e-40
Identity = 100/107 (93.46%), Postives = 100/107 (93.46%), Query Frame = 3 
Query:  432 SKVGDLFQLMRNVTMSFGSGGXXXXXXXXXX---AVDGEENLAREPGKPVKYRYRQEAARSRKRTRGRFVSEKAPAFVSITELMALRRAERERQQKAETAPVPVGAG 743
            SKVGDLFQLMRNVTMSFG   XXXXXXXXXX   AVDGEENLAREPGKPVKYRYRQEAARSRKRTRGRFVSEKAPAFVSITELMALRRAERERQQKAET PVPVGAG
Sbjct:  235 SKVGDLFQLMRNVTMSFGGXXXXXXXXXXXXXXGAVDGEENLAREPGKPVKYRYRQEAARSRKRTRGRFVSEKAPAFVSITELMALRRAERERQQKAETTPVPVGAG 341
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BLAST of mRNA_E-fasciculatus_F_contig16233.4244.1 vs. uniprot
Match: A0A6H5JCF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCF1_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 1.240e-39
Identity = 159/251 (63.35%), Postives = 160/251 (63.75%), Query Frame = 3 
Query:    3 DGEEDDERHRHHRSKVFLVDRGNGVARAVSGXXXXXXXXXXXXXXXXXSTVCDDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----SKVGDLFQLMRNVTMSFGSGGXXXXXXXXXXAVDGEENLAREPGKPVKYRYRQEAARSRKRTRGRFVSEKAPAFVSITELMALRRAERERQQKAETAPVPVGAG 743
            DGEEDDE HRHHRSKVFLVD G+GV RAVSGXXXXXXXXXXXXXXXXX       XXXXXXXXXXXXXXXX                                                                XXXXXXXX    SKVGDLFQLMRNVTMSFG  G          AVDGEENLAREPGKPVKYRYRQEAARSRKRTRGRFVSEKAPAFVSITELMALRRAERERQQKAET PVPVGAG
Sbjct:  493 DGEEDDELHRHHRSKVFLVDGGSGVPRAVSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKEAGVSHDVGCGGRVERAANTAEEPKTPGIAPLLTSTVVSGSGSSSSSNVDDTPVIPDPFRPSXXXXXXXXXXXXSKVGDLFQLMRNVTMSFGGDGGGGRDGAGG-AVDGEENLAREPGKPVKYRYRQEAARSRKRTRGRFVSEKAPAFVSITELMALRRAERERQQKAETTPVPVGAG 742
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16233.4244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVM3_ECTSI2.410e-4093.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCF1_9PHAE1.240e-3963.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16233contigE-fasciculatus_F_contig16233:2..1938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1937
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16233.4244.1prot_E-fasciculatus_F_contig16233.4244.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16233 460..747 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928092.2978458-UTR-E-fasciculatus_F_contig16233:1..4591622928092.2978458-UTR-E-fasciculatus_F_contig16233:1..459Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16233 2..459 +
1695995817.8948689-UTR-E-fasciculatus_F_contig16233:1..4591695995817.8948689-UTR-E-fasciculatus_F_contig16233:1..459Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16233 2..459 +
1622928092.3285599-UTR-E-fasciculatus_F_contig16233:747..19381622928092.3285599-UTR-E-fasciculatus_F_contig16233:747..1938Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16233 748..1938 +
1695995817.9151545-UTR-E-fasciculatus_F_contig16233:747..19381695995817.9151545-UTR-E-fasciculatus_F_contig16233:747..1938Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16233 748..1938 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928092.3128908-CDS-E-fasciculatus_F_contig16233:459..7471622928092.3128908-CDS-E-fasciculatus_F_contig16233:459..747Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16233 460..747 +
1695995817.9049509-CDS-E-fasciculatus_F_contig16233:459..7471695995817.9049509-CDS-E-fasciculatus_F_contig16233:459..747Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16233 460..747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16233.4244.1

>prot_E-fasciculatus_F_contig16233.4244.1 ID=prot_E-fasciculatus_F_contig16233.4244.1|Name=mRNA_E-fasciculatus_F_contig16233.4244.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=96bp
MRNVTMSFGSGGGSGGGGGSGGAVDGEENLAREPGKPVKYRYRQEAARSR
KRTRGRFVSEKAPAFVSITELMALRRAERERQQKAETAPVPVGAG*
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mRNA from alignment at E-fasciculatus_F_contig16233:2..1938+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16233.4244.1 ID=mRNA_E-fasciculatus_F_contig16233.4244.1|Name=mRNA_E-fasciculatus_F_contig16233.4244.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1937bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16233:2..1938+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGACGGCGAAGAGGACGACGAACGCCACCGCCACCACCGCAGCAAGGTG
TTCTTGGTGGACCGGGGGAACGGGGTGGCTCGGGCGGTTAGCGGCGGGGT
GGGGCGCGGCGTCAGCGGGGGTGTCGTGCGCGCGGTCAGCGGGGGTTCAA
CCGTCTGCGACGACGAGGATGCGGCCGCGACCTCCGGCCCACCACCCGCC
GCCGGCGAAAGCGAGGAGAAAGCAGCAGGGGTTTCTTCTGACGTAGGCTG
TGGCGGTAGGGGCGGAGGTGCAGCCAACACAGCAGAAGAGCCGAACGCAC
CAGGGGGGGCGCCGCTCCTTACGTCAGCAGTCGTCAGTGGCAGCAGCAGC
AGCAACGACGACGACACCTCGGTCATCCCCGACGCTTCTTCTCCGTCGTC
GTGCCCCCCCAACAACACCACTAGCTCCTCCTCCAAGGTCGGGGACCTGT
TCCAGCTTATGCGCAACGTCACCATGAGCTTCGGCAGCGGTGGCGGCAGC
GGCGGCGGCGGGGGGTCGGGCGGGGCGGTCGACGGAGAGGAAAACCTCGC
CCGCGAGCCCGGGAAGCCGGTCAAGTACCGGTACCGCCAGGAGGCCGCCA
GGTCGCGGAAGCGGACGCGGGGCCGGTTCGTGAGCGAGAAGGCGCCGGCG
TTCGTGTCCATCACGGAGCTGATGGCGCTACGGCGGGCGGAGCGCGAGCG
GCAGCAGAAGGCGGAGACGGCGCCCGTGCCCGTCGGGGCTGGGTGATGCC
GAAGACGGCCCCCAACACCCTGCGGCCGCCAGGAGAAGAATACGTGTTTT
TTTTGCGAAGGGATGTGATGGTGGGTGTGAAGAGAGAGTTATATGCATAG
GTGACTTTTGCGTTTACTCAGCTGGTGGGATACTAGAACAAGTAAATTTT
TGTCGACTCAATTTTTTCTTGCGTACGTTATAACAACATCATCTTGGCCG
AAATAATTAATACACGTCTCTATGTAGGACGGAACAGAACAAACGGTTAT
GCTTGTGTATGATATCAGCAGTGTTTTTTTTTCTTTTCCTACGGGCAATG
AAACGACCGCCGGTCGATGTCTACCCGTGTGTCGGATTCTGCTCTTCTTG
TGTATATACGGCATAGGGCTTGACTCTTACGCGATAGACGTCTTCCCACT
CTTTTTATTTTTTGGATGTGATCAGGATTCTGGTCTTCTTAGGATTAATT
AAGTACACAGCAGTAAACCTTCTCTGGTGGAGGGAAGGCGGCCATGTTGG
TGGTGTTTCGCGCGGAGAAGTTAGGCTCGGTACAACTTGTTCGTGCACTC
TGTTAAAAAGTGCGTGCGCGTGTGCTTTCTCTTTTTTTTTCCTCAGCCTG
TGAGGTTTCCAGTGGCGTAGAGTGCGGGGAAAACCGTCCCCTGGGTGATG
TGGCTGTGTGTTGTCCCATGCCGGACGCGTGCAATGTGTGTTTGGTTCCC
TGAAAAGCCGGCAGGCTTCGTTGTTGGTCGTGGCGGGCATGGCTTGCTCC
CGCGTTGAGTGTCGGAAGTATGTATCTTCGTGCCCTTGTTGCAGTGGTCC
TCTTTCATGCCACACGCCCTTAACGTGGTCACTCGTACGAGTGCACGCAG
AGACGACTTGCGCTCTTGCGTCGTGCAGAGAGAGGTGTCTTGTCGTTTGT
TCTTTTTTTTTCTCAAGTCAGGGCGTTGCTAGTTTGAGACTGTACTTGTA
GGAAGGAAGCAGCGCAAATGGTGCGCCTTCCAAGTGCAACGGGGTCGTTG
TTCGTGTTTTGTCACTCTTCTTCGTTTCTTGCGTGTTCCCGATCCAAGAC
CTGTAACGGAACTTGGATTTTAACCATATTTAGGTTCACAAACTAATATT
AATACGAAGAACAATACGAGAATGAAGAGTCTTGGTTGGGTGTGCAAAAA
TATATATGATGCCGTGTTCCACGGGCGAGAGAAAGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16233:2..1938+

>mRNA_E-fasciculatus_F_contig16233.4244.1 ID=mRNA_E-fasciculatus_F_contig16233.4244.1|Name=mRNA_E-fasciculatus_F_contig16233.4244.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=576bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16233:2..1938+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGCAACGTCACCATGAGCTTCGGCAGCGGTGGCGGCAGCGGCGGCGG
CGGGGGGTCGGGCGGGGCGGTCGACGGAGAGGAAAACCTCGCCCGCGAGC
CCGGGAAGCCGGTCAAGTACCGGTACCGCCAGGAGGCCGCCAGGTCGCGG
AAGCGGACGCGGGGCCGGTTCGTGAGCGAGAAGGCGCCGGCGTTCGTGTC
CATCACGGAGCTGATGGCGCTACGGCGGGCGGAGCGCGAGCGGCAGCAGA
AGGCGGAGACGGCGCCCGTGCCCGTCGGGGCTGGGTGAATGCGCAACGTC
ACCATGAGCTTCGGCAGCGGTGGCGGCAGCGGCGGCGGCGGGGGGTCGGG
CGGGGCGGTCGACGGAGAGGAAAACCTCGCCCGCGAGCCCGGGAAGCCGG
TCAAGTACCGGTACCGCCAGGAGGCCGCCAGGTCGCGGAAGCGGACGCGG
GGCCGGTTCGTGAGCGAGAAGGCGCCGGCGTTCGTGTCCATCACGGAGCT
GATGGCGCTACGGCGGGCGGAGCGCGAGCGGCAGCAGAAGGCGGAGACGG
CGCCCGTGCCCGTCGGGGCTGGGTGA
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