mRNA_E-fasciculatus_F_contig1596.4082.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1596.4082.1
Unique NamemRNA_E-fasciculatus_F_contig1596.4082.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1596.4082.1 vs. uniprot
Match: D7G7T2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7T2_ECTSI)

HSP 1 Score: 309 bits (792), Expect = 1.100e-99
Identity = 156/182 (85.71%), Postives = 165/182 (90.66%), Query Frame = 3 
Query:  267 MLMPGPRKTAMAGPWQASLLLLLLSSLWQLGFCSALRVGGAPHRSNFKMFKARYPLEGGPPQVKLHVAIIIVEDARTTGEKGGLSNGEDGDAGRRLVLFDFLPKEPTAFDTTLRLLTGNDVPGNLRERELRFLPPGSVYVGESDATIGEMRGFVAKYPDRLSLVSNNCFSFVDAFVARHRLE 812
            M++ G R  A+AGPW A+LLLLLLSSL QLGFCSAL     PHRSNFKMFKARYPLEGGPPQVKLH+A IIVED+R+TGEKGG  N ED D GRRLVLFDFLPKEPTAF+TTLRLLTGNDVPGNLRERELRFLPPGSVYVGESDATIG+MRGFVAKYPDRLSLVSNNCFSFVDAFVARHRLE
Sbjct:    1 MVILGQRAAALAGPWHAALLLLLLSSLRQLGFCSALLGVAPPHRSNFKMFKARYPLEGGPPQVKLHIA-IIVEDSRSTGEKGGRPNSEDRDTGRRLVLFDFLPKEPTAFETTLRLLTGNDVPGNLRERELRFLPPGSVYVGESDATIGDMRGFVAKYPDRLSLVSNNCFSFVDAFVARHRLE 181
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1596.4082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7T2_ECTSI1.100e-9985.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1596contigE-fasciculatus_F_contig1596:4007..5777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_000390.1
Exons1
Model size1771
Cds size549
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1596.4082.1prot_E-fasciculatus_F_contig1596.4082.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1596 4273..4821 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928064.4401314-UTR-E-fasciculatus_F_contig1596:4006..42721622928064.4401314-UTR-E-fasciculatus_F_contig1596:4006..4272Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1596 4007..4272 +
1695995808.310759-UTR-E-fasciculatus_F_contig1596:4006..42721695995808.310759-UTR-E-fasciculatus_F_contig1596:4006..4272Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1596 4007..4272 +
1622928064.4711401-UTR-E-fasciculatus_F_contig1596:4821..57771622928064.4711401-UTR-E-fasciculatus_F_contig1596:4821..5777Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1596 4822..5777 +
1695995808.330244-UTR-E-fasciculatus_F_contig1596:4821..57771695995808.330244-UTR-E-fasciculatus_F_contig1596:4821..5777Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1596 4822..5777 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928064.459887-CDS-E-fasciculatus_F_contig1596:4272..48211622928064.459887-CDS-E-fasciculatus_F_contig1596:4272..4821Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1596 4273..4821 +
1695995808.320522-CDS-E-fasciculatus_F_contig1596:4272..48211695995808.320522-CDS-E-fasciculatus_F_contig1596:4272..4821Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1596 4273..4821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1596.4082.1

>prot_E-fasciculatus_F_contig1596.4082.1 ID=prot_E-fasciculatus_F_contig1596.4082.1|Name=mRNA_E-fasciculatus_F_contig1596.4082.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=183bp
MLMPGPRKTAMAGPWQASLLLLLLSSLWQLGFCSALRVGGAPHRSNFKMF
KARYPLEGGPPQVKLHVAIIIVEDARTTGEKGGLSNGEDGDAGRRLVLFD
FLPKEPTAFDTTLRLLTGNDVPGNLRERELRFLPPGSVYVGESDATIGEM
RGFVAKYPDRLSLVSNNCFSFVDAFVARHRLE*
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mRNA from alignment at E-fasciculatus_F_contig1596:4007..5777+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1596.4082.1 ID=mRNA_E-fasciculatus_F_contig1596.4082.1|Name=mRNA_E-fasciculatus_F_contig1596.4082.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1771bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1596:4007..5777+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCTATGCACCCCCACCCTGTCATGCACGAAAATCATTCAACGCAGGCAC
ACACGCGCGCGCTGACGAAGCTGCCATTAACGCCAGACGCGGATGGTGAG
TGCCTTCTACTGGCTGTGCAGCGGTAGCGTTGCTTCGTGCATGCCGTACC
ACACCAAAACACAACGCGTTGTTGCACAAACAACTACAATTCGTCCTTCA
GTGTAGCACCAACATAGGTGTACAGCAGCTGCTGCTGTGTACCTCTCGCT
CTGTCTGGCGTAGACGATGCTGATGCCCGGGCCAAGAAAAACTGCGATGG
CTGGCCCTTGGCAAGCGTCGCTGCTCCTGCTCCTGCTGTCTAGCCTGTGG
CAGCTCGGTTTCTGTTCTGCTCTTCGGGTAGGGGGGGCACCACACCGCTC
CAACTTCAAGATGTTCAAGGCCAGATACCCGCTGGAAGGGGGCCCACCGC
AAGTGAAACTACACGTCGCCATCATCATCGTGGAAGACGCTCGAACCACA
GGCGAGAAGGGCGGTCTATCAAACGGCGAAGACGGAGACGCCGGGCGACG
CTTGGTGCTGTTCGATTTTCTGCCCAAAGAACCAACGGCGTTCGACACCA
CGCTTCGCTTGCTCACGGGAAACGACGTGCCGGGGAACCTCAGAGAGCGG
GAGCTTCGATTCCTGCCTCCCGGGTCGGTGTACGTGGGGGAAAGCGATGC
GACTATTGGCGAGATGCGAGGATTTGTAGCAAAGTATCCCGATCGTCTGT
CGCTGGTATCGAATAATTGCTTTTCATTTGTTGATGCCTTTGTTGCAAGG
CATCGCCTAGAGTAAGGGTGTAGACTATACTCCACAAGTGTGGTCGTGGC
TATTCGGTACCTGATGAATCTCCGACGTACTCAGTACATGATGCCAATCG
CTTGCCGAGGTCACCCACAGGTTGGGAACCTTGAAAGTTTGATTGTCACC
ACTACAGTACATACTTCATGATCAGGGTGAAACCACTCATGGATCTGTAG
CTTTGGTTGCCCGTAGTGTATGTAGTACTGCTCTTCAGCTGTTGTTGCCG
TGTCGCTGGCGATTCCCGCTTACTGCTGTACGCCAAAAGAACATGAGGGT
TTGGCATCAGTATCCCATTCTTTTTGGTTGGGCCGATCCGTTATTTGGAT
AGTCAAGCTGACAACTGCCGGGTGTGGTAACTACATATCGATAGGTTTTC
CTGTAAGCAGCAGTACTGCGAGGAACTGCCGGGCACGCTGTTGATTTGGT
TGACTTCTGGCAATCCTTCTGGTGTGCCGATCTCATTGGTATTGTTGTGT
ATGCTTGAGTTGATATCTACTTTCGGCACTGGCGCTTCCATGTGTGCCAT
GACACATGCATGTTCACGCGTGTGGTGAGGGCGGTCGGCGCACGCACGCA
CACTTCCTGTACGTCTTGCTTCTGTGGGGTAGCGGGAGGGTCGTTTTTGG
TTTTTGGTCTGCGAGTTGCGTATTTTGGCTATTTGAGTTGTGCGGTGACC
TTTGGGTGGCGGCATGCCATGCTGCTGCTGTAGGGGGACGGTGCGCTCGT
GTATTAGTCAGACCTATTATTAATAGTACAAAACTTTTGACCTCGCGAGA
TGTAGCTGACACACCAAGCTCAGCATACAAAGATAACGAAGGGTAACGTG
TTATCTCCACGATAAATATCGACTTTGCCTGTTCGTTTGTTTGTGTAGCT
CAAGCCTTGAGAGTTCCCTGAAGGTGCAGATTCCCCTTCAAGCTGCCTTT
CTCTTCAGCTTTCAAAATCCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1596:4007..5777+

>mRNA_E-fasciculatus_F_contig1596.4082.1 ID=mRNA_E-fasciculatus_F_contig1596.4082.1|Name=mRNA_E-fasciculatus_F_contig1596.4082.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1098bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1596:4007..5777+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGATGCCCGGGCCAAGAAAAACTGCGATGGCTGGCCCTTGGCAAGC
GTCGCTGCTCCTGCTCCTGCTGTCTAGCCTGTGGCAGCTCGGTTTCTGTT
CTGCTCTTCGGGTAGGGGGGGCACCACACCGCTCCAACTTCAAGATGTTC
AAGGCCAGATACCCGCTGGAAGGGGGCCCACCGCAAGTGAAACTACACGT
CGCCATCATCATCGTGGAAGACGCTCGAACCACAGGCGAGAAGGGCGGTC
TATCAAACGGCGAAGACGGAGACGCCGGGCGACGCTTGGTGCTGTTCGAT
TTTCTGCCCAAAGAACCAACGGCGTTCGACACCACGCTTCGCTTGCTCAC
GGGAAACGACGTGCCGGGGAACCTCAGAGAGCGGGAGCTTCGATTCCTGC
CTCCCGGGTCGGTGTACGTGGGGGAAAGCGATGCGACTATTGGCGAGATG
CGAGGATTTGTAGCAAAGTATCCCGATCGTCTGTCGCTGGTATCGAATAA
TTGCTTTTCATTTGTTGATGCCTTTGTTGCAAGGCATCGCCTAGAGTAAA
TGCTGATGCCCGGGCCAAGAAAAACTGCGATGGCTGGCCCTTGGCAAGCG
TCGCTGCTCCTGCTCCTGCTGTCTAGCCTGTGGCAGCTCGGTTTCTGTTC
TGCTCTTCGGGTAGGGGGGGCACCACACCGCTCCAACTTCAAGATGTTCA
AGGCCAGATACCCGCTGGAAGGGGGCCCACCGCAAGTGAAACTACACGTC
GCCATCATCATCGTGGAAGACGCTCGAACCACAGGCGAGAAGGGCGGTCT
ATCAAACGGCGAAGACGGAGACGCCGGGCGACGCTTGGTGCTGTTCGATT
TTCTGCCCAAAGAACCAACGGCGTTCGACACCACGCTTCGCTTGCTCACG
GGAAACGACGTGCCGGGGAACCTCAGAGAGCGGGAGCTTCGATTCCTGCC
TCCCGGGTCGGTGTACGTGGGGGAAAGCGATGCGACTATTGGCGAGATGC
GAGGATTTGTAGCAAAGTATCCCGATCGTCTGTCGCTGGTATCGAATAAT
TGCTTTTCATTTGTTGATGCCTTTGTTGCAAGGCATCGCCTAGAGTAA
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