mRNA_E-fasciculatus_F_contig15396.3783.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15396.3783.1
Unique NamemRNA_E-fasciculatus_F_contig15396.3783.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15396.3783.1 vs. uniprot
Match: D7FNF1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNF1_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 8.700e-60
Identity = 161/203 (79.31%), Postives = 164/203 (80.79%), Query Frame = 2 
Query:   98 GPSPSVLQQRVGLAAAGVVLLGVSWSAGAFVLTPPRVFTTAGKFNAALPLPASPRQGSRLS--MMSEKN-AEIVATAAPXXXXXXXXXXXXXXVRAAPXXXXXXXXXXXXXXXXXXXXAVQQHQASTAIENVDAAAAVAQE----AGEEVVRLTANTVARALPGTWLTDGLPKWMHTLRRRMITKEDWMHLHASSGAVSANGG 685
            GPSP+ LQQRVGLAAAGVVLLGVSWSA AFVLTPPRVF  AGKFNAALP  ASPRQGS     MMSEKN  EIVA A P  XXXXXXXXXXXX          XXXXXXXXXXXXXXXAVQQHQA+TAIENVDA  AVAQE    AGEEVVRLTA TVARALPGTWLT GLPKWMH LRRRMITKEDWMHLHASSGA+   GG
Sbjct:    9 GPSPAGLQQRVGLAAAGVVLLGVSWSARAFVLTPPRVFAAAGKFNAALP--ASPRQGSSFFKIMMSEKNNVEIVAAAGPAAXXXXXXXXXXXXXXXX------XXXXXXXXXXXXXXXAVQQHQANTAIENVDAVGAVAQEEVRQAGEEVVRLTATTVARALPGTWLTAGLPKWMHILRRRMITKEDWMHLHASSGALYIAGG 203
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15396.3783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNF1_ECTSI8.700e-6079.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15396contigE-fasciculatus_F_contig15396:1056..3044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score226.5
Seed ortholog evalue1.4e-56
Seed eggNOG ortholog2880.D7FNF1
EggNOG OGs2EG3I@1,2SM4Z@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_005670.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Exons1
Model size1989
Cds size771
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15396.3783.1prot_E-fasciculatus_F_contig15396.3783.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15396 1132..1902 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928016.2068155-UTR-E-fasciculatus_F_contig15396:1055..11311622928016.2068155-UTR-E-fasciculatus_F_contig15396:1055..1131Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15396 1056..1131 +
1695995790.0872538-UTR-E-fasciculatus_F_contig15396:1055..11311695995790.0872538-UTR-E-fasciculatus_F_contig15396:1055..1131Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15396 1056..1131 +
1622928016.2354782-UTR-E-fasciculatus_F_contig15396:1902..30441622928016.2354782-UTR-E-fasciculatus_F_contig15396:1902..3044Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15396 1903..3044 +
1695995790.1108491-UTR-E-fasciculatus_F_contig15396:1902..30441695995790.1108491-UTR-E-fasciculatus_F_contig15396:1902..3044Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15396 1903..3044 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928016.2227838-CDS-E-fasciculatus_F_contig15396:1131..19021622928016.2227838-CDS-E-fasciculatus_F_contig15396:1131..1902Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15396 1132..1902 +
1695995790.0998745-CDS-E-fasciculatus_F_contig15396:1131..19021695995790.0998745-CDS-E-fasciculatus_F_contig15396:1131..1902Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15396 1132..1902 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15396.3783.1

>prot_E-fasciculatus_F_contig15396.3783.1 ID=prot_E-fasciculatus_F_contig15396.3783.1|Name=mRNA_E-fasciculatus_F_contig15396.3783.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=257bp
MAARRRGGPSPSVLQQRVGLAAAGVVLLGVSWSAGAFVLTPPRVFTTAGK
FNAALPLPASPRQGSRLSMMSEKNAEIVATAAPATATATATATATATVRA
APPAAATAGGASSAAASATATAAVQQHQASTAIENVDAAAAVAQEAGEEV
VRLTANTVARALPGTWLTDGLPKWMHTLRRRMITKEDWMHLHASSGAVSA
NGGVVVKFHSRLLLFSSSRGACHTKIPMTRPKKTPNKNFRFVTTVLDLAG
IWCQHQ*
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mRNA from alignment at E-fasciculatus_F_contig15396:1056..3044+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15396.3783.1 ID=mRNA_E-fasciculatus_F_contig15396.3783.1|Name=mRNA_E-fasciculatus_F_contig15396.3783.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1989bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15396:1056..3044+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAACAAATCTTGGCATTCTCTGTCGTTCTTGGCCCCCCCATTTTTTTCCA
CGTCAAGCACCATCATCATCACCACCATGGCTGCCAGGCGTCGCGGCGGT
CCTTCCCCGTCAGTGCTGCAGCAGAGGGTCGGGCTGGCGGCGGCTGGCGT
CGTTCTTCTTGGCGTCAGTTGGTCGGCCGGGGCGTTTGTTCTCACTCCCC
CCCGAGTTTTCACAACCGCGGGAAAGTTCAATGCTGCTCTGCCGCTACCC
GCCTCTCCTCGTCAAGGATCTCGTCTCTCGATGATGTCGGAAAAAAATGC
TGAAATCGTCGCCACCGCCGCGCCCGCCACCGCCACCGCCACCGCCACCG
CCACCGCCACCGCCACGGTTCGAGCAGCACCGCCGGCAGCAGCAACAGCG
GGAGGAGCGTCTTCTGCCGCAGCTTCTGCTACCGCTACCGCTGCCGTCCA
ACAGCATCAGGCCAGCACGGCCATCGAGAATGTGGACGCCGCGGCTGCTG
TTGCCCAGGAGGCGGGCGAAGAGGTCGTGAGGCTGACGGCCAACACCGTC
GCGAGGGCACTGCCCGGGACCTGGCTGACCGACGGCCTGCCCAAGTGGAT
GCACACCCTGCGGCGGAGGATGATCACCAAGGAGGACTGGATGCACCTCC
ACGCTTCGAGTGGTGCGGTAAGTGCAAACGGCGGTGTCGTCGTGAAGTTT
CACTCTAGACTACTACTTTTCAGCAGCAGCCGTGGTGCGTGCCACACAAA
GATTCCGATGACTCGCCCCAAAAAAACGCCCAACAAGAACTTCCGCTTTG
TTACAACTGTTTTGGATTTGGCAGGGATTTGGTGTCAACATCAGTAAGAC
TAGCTCGGTGCTGTTGTTGCCGTTGCGAGGAGCGTGGATCCCCCTCGAGG
TGTCTGCTCGTCACACCAGCCCCTCCTCCTCCTCGGGGTGCGGGGTTCTT
CCTCGCGGTCCACTCTTCTTTCTTTCTCAAAGTACTTGCGTTGTTGCCGC
CGGATCATCATTATTTTCTTCTCTGCTGCGCGTACGTATGTGCGCCTTGG
CTCAAGGCTCAAGAGTTCGATCAAACTCGGAGTATTTATTTTTTCATCTC
CCCTTCTTCGTTTTCGTTGTTCTCCGTTATCGGCATGAGATGCAAGTTGA
TTTGATGTTCAACTCCTCCCAACTAATCGATTGGGTCATTATGGGCCTTG
GTGATTGATTTGGAGCCCCGGAGAGCCGGTACTACTGTAGTCTACACTGC
CTGTAGCGTGAATCAATTCTGTTCGTTCGCTCCCACGGCGCATGCTGGCG
GGCTGCCGCGGCCGCACATCGTATGCGCTGAATGCGCGTATCCAACTGTC
AGATTGATTGATGAATCTGGCTCCGCGCTAATTCCCGATTTTGAAAAACG
AACGCTCACACACACACTCACTTCGCCGGTGCCCGCCTGCTTCCCGCAAG
AATGTGTCATCAACCTGTTGTAGCTGCCTAAAAGAGGCAGCCACAGAGTG
GCTCTCGTAGAACCTATCTCTCCCCCACCCTCTCTGTAACGGTCACTCAG
GCCTTTTTTATTTTCCCGGTGTTCCTGGTGAACAAGGTCCGATGGTGTCT
CTTGCGTGCTAGCAGGTGCACACAGGTGCACACGTCCCAAGCTGCGAATG
AATGCACATCGCTTTCTACTCCGGAGTATCATTAGGCCGTCAAGCCGATC
CAATCCATGTAGATTAGGCCGTCAAGCCGATCCAATCCATGTAGATCGTT
GTGTAGTCTAGTCAATTCTTATTATGTTCAGCCAACACGGGGTAACGTAC
CTACCGACTTTCGGGCACACACAACAACAACATTATTATTATTAACGGTT
CTGACGGCACACACACACACACCTACCATTGGTCAGCCGGTTAGCGCGTT
CGATGCTAATAATAAAGACACACACACACACAGACGAAAGAAATCATCAT
GATGGCGATGAGGGAAACTCGAGTGGCAACGATGAGGGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15396:1056..3044+

>mRNA_E-fasciculatus_F_contig15396.3783.1 ID=mRNA_E-fasciculatus_F_contig15396.3783.1|Name=mRNA_E-fasciculatus_F_contig15396.3783.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1542bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15396:1056..3044+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCTGCCAGGCGTCGCGGCGGTCCTTCCCCGTCAGTGCTGCAGCAGAG
GGTCGGGCTGGCGGCGGCTGGCGTCGTTCTTCTTGGCGTCAGTTGGTCGG
CCGGGGCGTTTGTTCTCACTCCCCCCCGAGTTTTCACAACCGCGGGAAAG
TTCAATGCTGCTCTGCCGCTACCCGCCTCTCCTCGTCAAGGATCTCGTCT
CTCGATGATGTCGGAAAAAAATGCTGAAATCGTCGCCACCGCCGCGCCCG
CCACCGCCACCGCCACCGCCACCGCCACCGCCACCGCCACGGTTCGAGCA
GCACCGCCGGCAGCAGCAACAGCGGGAGGAGCGTCTTCTGCCGCAGCTTC
TGCTACCGCTACCGCTGCCGTCCAACAGCATCAGGCCAGCACGGCCATCG
AGAATGTGGACGCCGCGGCTGCTGTTGCCCAGGAGGCGGGCGAAGAGGTC
GTGAGGCTGACGGCCAACACCGTCGCGAGGGCACTGCCCGGGACCTGGCT
GACCGACGGCCTGCCCAAGTGGATGCACACCCTGCGGCGGAGGATGATCA
CCAAGGAGGACTGGATGCACCTCCACGCTTCGAGTGGTGCGGTAAGTGCA
AACGGCGGTGTCGTCGTGAAGTTTCACTCTAGACTACTACTTTTCAGCAG
CAGCCGTGGTGCGTGCCACACAAAGATTCCGATGACTCGCCCCAAAAAAA
CGCCCAACAAGAACTTCCGCTTTGTTACAACTGTTTTGGATTTGGCAGGG
ATTTGGTGTCAACATCAGTAAATGGCTGCCAGGCGTCGCGGCGGTCCTTC
CCCGTCAGTGCTGCAGCAGAGGGTCGGGCTGGCGGCGGCTGGCGTCGTTC
TTCTTGGCGTCAGTTGGTCGGCCGGGGCGTTTGTTCTCACTCCCCCCCGA
GTTTTCACAACCGCGGGAAAGTTCAATGCTGCTCTGCCGCTACCCGCCTC
TCCTCGTCAAGGATCTCGTCTCTCGATGATGTCGGAAAAAAATGCTGAAA
TCGTCGCCACCGCCGCGCCCGCCACCGCCACCGCCACCGCCACCGCCACC
GCCACCGCCACGGTTCGAGCAGCACCGCCGGCAGCAGCAACAGCGGGAGG
AGCGTCTTCTGCCGCAGCTTCTGCTACCGCTACCGCTGCCGTCCAACAGC
ATCAGGCCAGCACGGCCATCGAGAATGTGGACGCCGCGGCTGCTGTTGCC
CAGGAGGCGGGCGAAGAGGTCGTGAGGCTGACGGCCAACACCGTCGCGAG
GGCACTGCCCGGGACCTGGCTGACCGACGGCCTGCCCAAGTGGATGCACA
CCCTGCGGCGGAGGATGATCACCAAGGAGGACTGGATGCACCTCCACGCT
TCGAGTGGTGCGGTAAGTGCAAACGGCGGTGTCGTCGTGAAGTTTCACTC
TAGACTACTACTTTTCAGCAGCAGCCGTGGTGCGTGCCACACAAAGATTC
CGATGACTCGCCCCAAAAAAACGCCCAACAAGAACTTCCGCTTTGTTACA
ACTGTTTTGGATTTGGCAGGGATTTGGTGTCAACATCAGTAA
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