mRNA_E-fasciculatus_F_contig1538.3776.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1538.3776.1
Unique NamemRNA_E-fasciculatus_F_contig1538.3776.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1538.3776.1 vs. uniprot
Match: D7FIM1_ECTSI (Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIM1_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 2.140e-47
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 1 
Query:   13 ERASPPPVLLSPARSRLVAAGVRGMFNLGNTCFMSSVLQAVLHISVMQSFFFEKGHEPARCEKLRKETTKLRSQILQYDSNASFDNHP 276
            ERASPPPVLLSPARSRLVAAGVRGMFNLGNTCFMSSVLQAVLHISVMQSFF EKGHEP+RCEKLRKETTKLRSQILQYDSNASFDNHP
Sbjct:  137 ERASPPPVLLSPARSRLVAAGVRGMFNLGNTCFMSSVLQAVLHISVMQSFFSEKGHEPSRCEKLRKETTKLRSQILQYDSNASFDNHP 224
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BLAST of mRNA_E-fasciculatus_F_contig1538.3776.1 vs. uniprot
Match: A0A4D9D8F2_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8F2_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.280e-8
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:   31 PVLLSPARSRLVAAGVRGMFNLGNTCFMSSVLQAVLHISVMQSFFFEKGHEPARCEK 201
            P+L  P   R    G+RG +NLG+TCFMS +LQA+LH  V++ FF  + H  A C K
Sbjct:   57 PLLAQPCLVRHATHGLRGFYNLGSTCFMSCILQALLHNPVLKDFFLRRSHSLATCPK 113
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BLAST of mRNA_E-fasciculatus_F_contig1538.3776.1 vs. uniprot
Match: A0A8J4GHT7_9CHLO (USP domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GHT7_9CHLO)

HSP 1 Score: 58.9 bits (141), Expect = 4.220e-8
Identity = 25/47 (53.19%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   70 AGVRGMFNLGNTCFMSSVLQAVLHISVMQSFFFEKGHEPARCEKLRK 210
            AG+RG+ NLGNTCFM+SVLQ  +H  +M+++F  +GH  + CE+L K
Sbjct:  160 AGLRGLNNLGNTCFMNSVLQVFIHSPLMRNYFLGQGHSQSTCERLGK 206
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BLAST of mRNA_E-fasciculatus_F_contig1538.3776.1 vs. uniprot
Match: A0A8J4FN91_9CHLO (USP domain-containing protein n=4 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FN91_9CHLO)

HSP 1 Score: 58.9 bits (141), Expect = 4.330e-8
Identity = 25/47 (53.19%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   70 AGVRGMFNLGNTCFMSSVLQAVLHISVMQSFFFEKGHEPARCEKLRK 210
            AG+RG+ NLGNTCFM+SVLQ  +H  +M+++F  +GH  + CE+L K
Sbjct:  221 AGLRGLNNLGNTCFMNSVLQVFIHSPLMRNYFLGQGHSQSTCERLGK 267
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BLAST of mRNA_E-fasciculatus_F_contig1538.3776.1 vs. uniprot
Match: A0A6A6Z1Z9_9PEZI (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Mytilinidiaceae TaxID=281242 RepID=A0A6A6Z1Z9_9PEZI)

HSP 1 Score: 58.5 bits (140), Expect = 5.640e-8
Identity = 23/45 (51.11%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   67 AAGVRGMFNLGNTCFMSSVLQAVLHISVMQSFFFEKGHEPARCEK 201
            A G+RG++N+G TCFMS +LQ +LH   +++F+  +GH+PA CEK
Sbjct:  179 AIGLRGLYNMGQTCFMSVILQTLLHNPFVRNFYLAEGHKPADCEK 223
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BLAST of mRNA_E-fasciculatus_F_contig1538.3776.1 vs. uniprot
Match: A0A4U0V5B2_9PEZI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Friedmanniomyces endolithicus TaxID=329885 RepID=A0A4U0V5B2_9PEZI)

HSP 1 Score: 58.2 bits (139), Expect = 7.750e-8
Identity = 27/67 (40.30%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:   28 PPVLLSPARSRL---------VAAGVRGMFNLGNTCFMSSVLQAVLHISVMQSFFFEKGHEPARCEK 201
            PP    P RS L          A G+RGM+N+G TCFMS +LQ++LH  +++++F  +GH+ + CE+
Sbjct:   95 PPTSTEPTRSLLRANAAPTPCAATGLRGMYNMGQTCFMSVILQSLLHNPLLRTWFLSEGHKSSDCER 161
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BLAST of mRNA_E-fasciculatus_F_contig1538.3776.1 vs. uniprot
Match: A0A8E2JK35_9PEZI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Lepidopterella palustris CBS 459.81 TaxID=1314670 RepID=A0A8E2JK35_9PEZI)

HSP 1 Score: 57.8 bits (138), Expect = 1.050e-7
Identity = 22/45 (48.89%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   67 AAGVRGMFNLGNTCFMSSVLQAVLHISVMQSFFFEKGHEPARCEK 201
            A G+RG++N+G TCFMS +LQ ++H   +++F+  +GH+PA CEK
Sbjct:  178 AIGLRGLYNMGQTCFMSVILQTLIHNPFIRNFYLAEGHKPADCEK 222
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BLAST of mRNA_E-fasciculatus_F_contig1538.3776.1 vs. uniprot
Match: W7TMS7_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMS7_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.130e-7
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:   31 PVLLSPARSRLVAAGVRGMFNLGNTCFMSSVLQAVLHISVMQSFFFEKGHEPARCEK 201
            P+L  P+  R    G+RG  NLG+TCFMS +LQA+LH  V++ FF  + H  A C K
Sbjct:  144 PLLAQPSLVRHATYGLRGFCNLGSTCFMSCILQALLHNPVLKDFFLRRRHSLATCPK 200
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BLAST of mRNA_E-fasciculatus_F_contig1538.3776.1 vs. uniprot
Match: A0A1Y2LRH3_EPING (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Epicoccum nigrum TaxID=105696 RepID=A0A1Y2LRH3_EPING)

HSP 1 Score: 57.4 bits (137), Expect = 1.430e-7
Identity = 25/62 (40.32%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:   67 AAGVRGMFNLGNTCFMSSVLQAVLHISVMQSFFFEKGHEPARCEKLRKETTKLRSQILQYDS 252
            A G+RG++N+G TCFMS +LQ ++H   +++FF  +GH+ A CEK    +  L   I+++ S
Sbjct:  172 ATGLRGLYNMGQTCFMSVILQTIVHNPFIRNFFLAEGHKTADCEKESCVSCALDEMIVEFHS 233
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1538.3776.1 vs. uniprot
Match: A0A4U0V4E5_9PEZI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Friedmanniomyces endolithicus TaxID=329885 RepID=A0A4U0V4E5_9PEZI)

HSP 1 Score: 57.4 bits (137), Expect = 1.440e-7
Identity = 29/69 (42.03%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:   22 SPPPVLLSPARSRL---------VAAGVRGMFNLGNTCFMSSVLQAVLHISVMQSFFFEKGHEPARCEK 201
            SPPP    P RS L          A G+RGM+N+G TCFMS +LQ++LH  +++++F  +GH+ + CE+
Sbjct:   51 SPPPST-EPTRSLLRANAAPTPCAATGLRGMYNMGQTCFMSVILQSLLHNPLLRTWFLSEGHKSSDCER 118
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1538.3776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIM1_ECTSI2.140e-4797.73Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9D8F2_9STRA2.280e-847.37Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nann... [more]
A0A8J4GHT7_9CHLO4.220e-853.19USP domain-containing protein n=1 Tax=Volvox retic... [more]
A0A8J4FN91_9CHLO4.330e-853.19USP domain-containing protein n=4 Tax=Volvox retic... [more]
A0A6A6Z1Z9_9PEZI5.640e-851.11Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Myti... [more]
A0A4U0V5B2_9PEZI7.750e-840.30Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Frie... [more]
A0A8E2JK35_9PEZI1.050e-748.89Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Lepi... [more]
W7TMS7_9STRA1.130e-747.37Ubiquitinyl hydrolase 1 n=1 Tax=Nannochloropsis ga... [more]
A0A1Y2LRH3_EPING1.430e-740.32Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Epic... [more]
A0A4U0V4E5_9PEZI1.440e-742.03Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Frie... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1538contigE-fasciculatus_F_contig1538:635..1224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.7
Seed ortholog evalue3.9e-41
Seed eggNOG ortholog2880.D7FIM1
Preferred nameUSP22
KEGG koko:K11366,ko:K11848,ko:K11873
GOsGO:0000018,GO:0000123,GO:0000124,GO:0000902,GO:0000904,GO:0003674,GO:0003682,GO:0003712,GO:0003713,GO:0003824,GO:0004843,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006282,GO:0006325,GO:0006338,GO:0006342,GO:0006348,GO:0006355,GO:0006357,GO:0006396,GO:0006464,GO:0006473,GO:0006475,GO:0006479,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006996,GO:0007154,GO:0007275,GO:0007346,GO:0007399,GO:0007409,GO:0007411,GO:0007412,GO:0008150,GO:0008152,GO:0008213,GO:0008233,GO:0008234,GO:0008347,GO:0008380,GO:0009056,GO:0009057,GO:0009605,GO:0009653,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010001,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010569,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010941,GO:0010942,GO:0016043,GO:0016070,GO:0016458,GO:0016477,GO:0016567,GO:0016569,GO:0016570,GO:0016571,GO:0016573,GO:0016574,GO:0016578,GO:0016579,GO:0016604,GO:0016607,GO:0016787,GO:0018022,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0019783,GO:0019899,GO:0019941,GO:0021782,GO:0022008,GO:0030030,GO:0030154,GO:0030163,GO:0030182,GO:0030374,GO:0031175,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031647,GO:0031974,GO:0031981,GO:0032259,GO:0032446,GO:0032501,GO:0032502,GO:0032947,GO:0032989,GO:0032990,GO:0032991,GO:0034641,GO:0034729,GO:0034968,GO:0035616,GO:0036211,GO:0036459,GO:0040011,GO:0040029,GO:0042063,GO:0042221,GO:0042330,GO:0042393,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043543,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045787,GO:0045814,GO:0045892,GO:0045893,GO:0045931,GO:0045934,GO:0045935,GO:0046483,GO:0046695,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051052,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051568,GO:0051603,GO:0051674,GO:0051726,GO:0060255,GO:0061564,GO:0061578,GO:0065007,GO:0065008,GO:0070011,GO:0070013,GO:0070461,GO:0070536,GO:0070646,GO:0070647,GO:0071108,GO:0071704,GO:0071819,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097485,GO:0099114,GO:0101005,GO:0120036,GO:0120039,GO:0140096,GO:0140110,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1902493,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905368,GO:1990234,GO:1990380,GO:2000112,GO:2000113,GO:2000779,GO:2001020,GO:2001032,GO:2001141
EggNOG free text desc.ubiquitin carboxyl-terminal hydrolase
EggNOG OGsCOG5560@1,KOG1867@1,KOG1867@2759,KOG1870@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03021,ko03036,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size277
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928014.6526575-CDS-E-fasciculatus_F_contig1538:635..7821622928014.6526575-CDS-E-fasciculatus_F_contig1538:635..782Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1538 636..782 -
1695995789.4510958-CDS-E-fasciculatus_F_contig1538:635..7821695995789.4510958-CDS-E-fasciculatus_F_contig1538:635..782Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1538 636..782 -
1622928014.6695511-CDS-E-fasciculatus_F_contig1538:1095..12241622928014.6695511-CDS-E-fasciculatus_F_contig1538:1095..1224Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1538 1096..1224 -
1695995789.4616983-CDS-E-fasciculatus_F_contig1538:1095..12241695995789.4616983-CDS-E-fasciculatus_F_contig1538:1095..1224Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1538 1096..1224 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1538.3776.1prot_E-fasciculatus_F_contig1538.3776.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1538 636..1224 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1538.3776.1

>prot_E-fasciculatus_F_contig1538.3776.1 ID=prot_E-fasciculatus_F_contig1538.3776.1|Name=mRNA_E-fasciculatus_F_contig1538.3776.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=92bp
PAGKERASPPPVLLSPARSRLVAAGVRGMFNLGNTCFMSSVLQAVLHISV
MQSFFFEKGHEPARCEKLRKETTKLRSQILQYDSNASFDNHP
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mRNA from alignment at E-fasciculatus_F_contig1538:635..1224-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1538.3776.1 ID=mRNA_E-fasciculatus_F_contig1538.3776.1|Name=mRNA_E-fasciculatus_F_contig1538.3776.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=590bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1538:635..1224- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGGCCGGGAAAGAGCGGGCGTCGCCGCCGCCGGTGCTGCTGTCGCCGGC
GAGAAGCCGGCTGGTCGCCGCCGGGGTGAGGGGCATGTTCAACCTCGGGA
ACACTTGCTTCATGAGCTCTGTGCTGCAGGTGCGTTGTCGGTTTTGATCT
TGCGCTTGATCGGCCAGGGGGAGAGGGGTGCCGGTTGTTGCGGATGGCCA
TGGCCCTTGGGTACAGCATCGTGCATCTATGGCCATGCTCGTGTACTGAT
GAGGGGTTGGCGGTTGGCGGTCGTTATTTTGGGTCAAATGGATGTTTGTA
TTTAGCACACGCTAGTTAGAGCTCTTCCCTCAACGCCCACCCCCGACGCA
GGTCCGCTTGTTGTATTTCGCCGGGGTGCATGCTATTCACATCCTGCCCT
CGCACCACGCCGCGAAACGAAATGGCGACGTTAAAATCGCAGGCGGTGCT
CCACATCTCTGTGATGCAGTCGTTCTTTTTCGAGAAAGGTCACGAGCCGG
CCCGCTGCGAGAAACTCCGCAAGGAGACCACCAAGCTGCGCTCTCAGATC
CTTCAGTACGACTCCAACGCGTCGTTTGACAATCATCCGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1538:635..1224-

>mRNA_E-fasciculatus_F_contig1538.3776.1 ID=mRNA_E-fasciculatus_F_contig1538.3776.1|Name=mRNA_E-fasciculatus_F_contig1538.3776.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=552bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1538:635..1224- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGGCCGGGAAAGAGCGGGCGTCGCCGCCGCCGGTGCTGCTGTCGCCGGC
GAGAAGCCGGCTGGTCGCCGCCGGGGTGAGGGGCATGTTCAACCTCGGGA
ACACTTGCTTCATGAGCTCTGTGCTGCAGCCGGCCGGGAAAGAGCGGGCG
TCGCCGCCGCCGGTGCTGCTGTCGCCGGCGAGAAGCCGGCTGGTCGCCGC
CGGGGTGAGGGGCATGTTCAACCTCGGGAACACTTGCTTCATGAGCTCTG
TGCTGCAGGCGGTGCTCCACATCTCTGTGATGCAGTCGTTCTTTTTCGAG
AAAGGTCACGAGCCGGCCCGCTGCGAGAAACTCCGCAAGGAGACCACCAA
GCTGCGCTCTCAGATCCTTCAGTACGACTCCAACGCGTCGTTTGACAATC
ATCCGGCGGTGCTCCACATCTCTGTGATGCAGTCGTTCTTTTTCGAGAAA
GGTCACGAGCCGGCCCGCTGCGAGAAACTCCGCAAGGAGACCACCAAGCT
GCGCTCTCAGATCCTTCAGTACGACTCCAACGCGTCGTTTGACAATCATC
CG
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