mRNA_E-fasciculatus_F_contig15216.3689.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15216.3689.1
Unique NamemRNA_E-fasciculatus_F_contig15216.3689.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15216.3689.1 vs. uniprot
Match: A0A6H5KYL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYL0_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 1.280e-68
Identity = 117/158 (74.05%), Postives = 123/158 (77.85%), Query Frame = 1 
Query:    7 ACKAVATMKGIQTLDISSNKLSLAGAKALAKALWRCRSLHEIVLEESVAADDTAAVSAVFKEYMPWATVRVDDRDGRKNLARRYLAAGGGHGQAYDAADXXXXXXXXXXXXXXXXXXXXHGDNGDLGFGLMDPHHWEAVDAESDGEVPPELMMDDDTD 480
            ACKAVATM GIQTLDISSN+LSL GAKALAKALWRCRSLHEIVLEESV  DD AAVSAVFKEYMPWATVRVDDRDGRKNLARRYLAA GG GQA+DA                      +G   D+ F +M PHHWEAVDAESDGEVPPEL+MDDDTD
Sbjct:  225 ACKAVATMTGIQTLDISSNQLSLTGAKALAKALWRCRSLHEIVLEESVVPDDAAAVSAVFKEYMPWATVRVDDRDGRKNLARRYLAAAGGQGQAHDAV------ADDQGAFSDEEGGDNNGQEDDVVFDMMGPHHWEAVDAESDGEVPPELVMDDDTD 376
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BLAST of mRNA_E-fasciculatus_F_contig15216.3689.1 vs. uniprot
Match: D7FZG4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG4_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 1.910e-68
Identity = 135/159 (84.91%), Postives = 136/159 (85.53%), Query Frame = 1 
Query:    7 ACKAVATMKGIQTLDISSNKLSLAGAKALAKALWRCRSLHEIVLEESVAADDTAAVSAVFKEYMPWATVRVDDRDGRKNLARRYLAAGGGHGQAYDA-ADXXXXXXXXXXXXXXXXXXXXHGDNGDLGFGLMDPHHWEAVDAESDGEVPPELMMDDDTD 480
            ACKAVATM GIQTLDISSN+LSL GAKALAKALWRCRSLHEIVLEESV  DDTAAVSAVFKEYMPWATVRVDDRDGRKNLARRYLAA GG GQAYDA AD       XXXXXXXXXXXX        GF LMDPHHWEAVDAESDGEVPPELMMDDDTD
Sbjct:  442 ACKAVATMTGIQTLDISSNQLSLTGAKALAKALWRCRSLHEIVLEESVVPDDTAAVSAVFKEYMPWATVRVDDRDGRKNLARRYLAAAGGQGQAYDALADDQGAFDDXXXXXXXXXXXXG-------GFDLMDPHHWEAVDAESDGEVPPELMMDDDTD 593
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15216.3689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYL0_9PHAE1.280e-6874.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZG4_ECTSI1.910e-6884.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15216contigE-fasciculatus_F_contig15216:86..2328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_003210.1
Hectar predicted targeting categoryother localisation
Exons4
Model size483
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15216.3689.1prot_E-fasciculatus_F_contig15216.3689.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15216 113..2328 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928004.2372139-UTR-E-fasciculatus_F_contig15216:85..1121622928004.2372139-UTR-E-fasciculatus_F_contig15216:85..112Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15216 86..112 +
1695995784.6255147-UTR-E-fasciculatus_F_contig15216:85..1121695995784.6255147-UTR-E-fasciculatus_F_contig15216:85..112Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15216 86..112 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928004.2538924-CDS-E-fasciculatus_F_contig15216:112..2561622928004.2538924-CDS-E-fasciculatus_F_contig15216:112..256Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15216 113..256 +
1695995784.6417933-CDS-E-fasciculatus_F_contig15216:112..2561695995784.6417933-CDS-E-fasciculatus_F_contig15216:112..256Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15216 113..256 +
1622928004.2674494-CDS-E-fasciculatus_F_contig15216:986..11281622928004.2674494-CDS-E-fasciculatus_F_contig15216:986..1128Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15216 987..1128 +
1695995784.6555982-CDS-E-fasciculatus_F_contig15216:986..11281695995784.6555982-CDS-E-fasciculatus_F_contig15216:986..1128Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15216 987..1128 +
1622928004.281755-CDS-E-fasciculatus_F_contig15216:1618..17441622928004.281755-CDS-E-fasciculatus_F_contig15216:1618..1744Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15216 1619..1744 +
1695995784.668803-CDS-E-fasciculatus_F_contig15216:1618..17441695995784.668803-CDS-E-fasciculatus_F_contig15216:1618..1744Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15216 1619..1744 +
1622928004.2951427-CDS-E-fasciculatus_F_contig15216:2284..23281622928004.2951427-CDS-E-fasciculatus_F_contig15216:2284..2328Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15216 2285..2328 +
1695995784.6822054-CDS-E-fasciculatus_F_contig15216:2284..23281695995784.6822054-CDS-E-fasciculatus_F_contig15216:2284..2328Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15216 2285..2328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15216.3689.1

>prot_E-fasciculatus_F_contig15216.3689.1 ID=prot_E-fasciculatus_F_contig15216.3689.1|Name=mRNA_E-fasciculatus_F_contig15216.3689.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=152bp
MKGIQTLDISSNKLSLAGAKALAKALWRCRSLHEIVLEESVAADDTAAVS
AVFKEYMPWATVRVDDRDGRKNLARRYLAAGGGHGQAYDAADDDQGAFSD
DEEDGDNNNGGGHGDNGDLGFGLMDPHHWEAVDAESDGEVPPELMMDDDT
D*
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mRNA from alignment at E-fasciculatus_F_contig15216:86..2328+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15216.3689.1 ID=mRNA_E-fasciculatus_F_contig15216.3689.1|Name=mRNA_E-fasciculatus_F_contig15216.3689.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2243bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15216:86..2328+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCCAGGCCTGCAAGGCGGTGGCGACGATGAAGGGCATTCAGACCCTCGA
CATCTCGAGCAACAAGCTCTCCCTCGCGGGAGCCAAGGCCCTAGCCAAGG
CCCTCTGGCGGTGCCGCAGCCTCCACGAGATAGTGCTGGAGGAAAGCGTC
GCCGCCGATGATACCGCCGCGGTACGTTTTCCCGCTCTGGCGACTTTATC
ACTTCCATTATGTATCCCCGCAACCTTCTACGGTCGGGGTCAGTGGTTCG
AAACCGGGGGGAAGCGCGTTTTTTTTTCTCGCGAATGTTTTTTTTTTTCT
CTCGCTTCCGTTCCTGGTATTGTAGTGGAAAGCGCTAGTTCGTGTGCAAA
GCAGGGGGGGTGAGTAGGGGGAGGGGAGGAACGGAATCGTTGTGTGTGAC
CACGGGTGGGGGCTCTCCTCCTATGTACATGGCAGCAATGCTGCAAATGT
GAGCTGCACCGCCGTGACTGACTGGCTGTACCACCACGTTGCACGTGCGC
ACGCACCACTATCCGGCGAAGAGCATGCGTGCGTAGTTCATTAATCATAT
CACACGATAGTGGCGCGTGCGCACGTGCAACGTGGTGTTACAGCCAGTTA
GTCACGGTGCCGCCGCTCCGCCAGAGCACGACTCCTTGCTTCACGCACAC
GTGCGTGGCGTCTATGTTGGTTTTTTTCAGTATTGTAGCGACTGCGGTTT
ACGAGAGGCTTGGGACATACAGTAGCGAACGAAATTCTCTTACATCTGTT
TTTTTCTCGTCAACCGTCCTACTGTGTAATAGATACTTGTACTGGAGTGT
ATTTCTCATGGTCGGGAAGCCAAGAGCACTCCTTACATCCGTTGTTCGCT
TAAAAACCCTCTACCACCACTGCTATCTACCCCCGTTCTGACGACCATCA
GGTGTCCGCGGTGTTCAAGGAGTACATGCCGTGGGCCACCGTCCGTGTGG
ACGATCGCGACGGCCGCAAGAACCTGGCCCGACGCTACCTGGCCGCGGGC
GGCGGACACGGCCAGGCTTACGACGCGGCGGATGACGACCAAGGTAAGCA
AGCGTGCCTGTCATGACAGGTGGCCAGGCTGTCAGCAAGCACGGGGATGC
ATGGCCAGATGTACTGCTGGTTCTGCTGTACCCTGTGGCCACGTCAGGTA
GTCGTGTACGTCAGTTAGAGTCAGTTGGACAGGGAGACCGGAACGGTGAA
CGGTGAACGGTGAACGGTGATCAATGTGAAGGCACCAACAAATACAACAA
CAACGACAACAACATCAACAACGTACGTCATCAACACCAACAACAACGTC
ATCAACAACAACTACAACAACAACAACAATAACAACAACAACTACAACAA
TAATAACAAAAACAACCTGTTCTTATTCCCTCTCCCTCTCCCACTCCCAC
TCCCACTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCTGTTTCTCTCGA
TCTTTTTGGACCTCTCTCTCTGTTGTTCTCTCTCTTCCTTGATCTCTCTG
TCTCTCTGTCTCTCTCTCTGTCTTTGCGTATAGGCGCATTCAGTGACGAC
GAGGAGGATGGCGACAACAACAACGGGGGGGGGCACGGGGACAACGGAGA
CTTGGGGTTCGGTTTGATGGACCCTCACCACTGGGAAGCCGTCGATGCAG
AATCCGACGGTGTGTGAGAGATATAGTACTGCTGTAGTACATCACGTGCT
TCCTTCGGTGCTGCTGCTATTGATCGGTGATGGGTCGTGTGATGATGATG
TAGATCGCCAAAACGTTGTTGTTGTGGTTGTTGTTATCCAAGTCTGTGTT
GGTGGTATTGATTGGCGACGATGATTTTTGGATCACTTGCTGTTGCAGAA
CGATGATGCCATAGATGGTCGGTGCTCGACGTTGTCATCTTGCTGTCAAC
AAGGATGGGTTCGATTGCGGCCATGATGACGTAGATCGATCGTGGTAAGG
TGCTGTTCGCGTCGTAGGTGTCGCTGTCTGTTAATGGTGCTGTCGTTGTC
GTTGTTGATGCTGTTAGTGCTGCTGTCGGTGCTGCCTCTGCATCTGTTGC
GGTCGGCGTTGCTGGAAACTGTATAACTGCTGTATATTGGTTTGCTGACA
CGTACAACAGTTGGTGACTCTTGGGTTGGGGAACCCTAAAGACTCTTCCC
GTCCCCCCCTTCTTGTTGGCACACTGACCCCCCGCTGCCCAACCGCCAGG
GGAAGTACCCCCGGAGCTGATGATGGACGATGACACGGACTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15216:86..2328+

>mRNA_E-fasciculatus_F_contig15216.3689.1 ID=mRNA_E-fasciculatus_F_contig15216.3689.1|Name=mRNA_E-fasciculatus_F_contig15216.3689.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=912bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15216:86..2328+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAGGGCATTCAGACCCTCGACATCTCGAGCAACAAGCTCTCCCTCGC
GGGAGCCAAGGCCCTAGCCAAGGCCCTCTGGCGGTGCCGCAGCCTCCACG
AGATAGTGCTGGAGGAAAGCGTCGCCGCCGATGATACCGCCGCGATGAAG
GGCATTCAGACCCTCGACATCTCGAGCAACAAGCTCTCCCTCGCGGGAGC
CAAGGCCCTAGCCAAGGCCCTCTGGCGGTGCCGCAGCCTCCACGAGATAG
TGCTGGAGGAAAGCGTCGCCGCCGATGATACCGCCGCGGTGTCCGCGGTG
TTCAAGGAGTACATGCCGTGGGCCACCGTCCGTGTGGACGATCGCGACGG
CCGCAAGAACCTGGCCCGACGCTACCTGGCCGCGGGCGGCGGACACGGCC
AGGCTTACGACGCGGCGGATGACGACCAAGGTGTCCGCGGTGTTCAAGGA
GTACATGCCGTGGGCCACCGTCCGTGTGGACGATCGCGACGGCCGCAAGA
ACCTGGCCCGACGCTACCTGGCCGCGGGCGGCGGACACGGCCAGGCTTAC
GACGCGGCGGATGACGACCAAGGCGCATTCAGTGACGACGAGGAGGATGG
CGACAACAACAACGGGGGGGGGCACGGGGACAACGGAGACTTGGGGTTCG
GTTTGATGGACCCTCACCACTGGGAAGCCGTCGATGCAGAATCCGACGGC
GCATTCAGTGACGACGAGGAGGATGGCGACAACAACAACGGGGGGGGGCA
CGGGGACAACGGAGACTTGGGGTTCGGTTTGATGGACCCTCACCACTGGG
AAGCCGTCGATGCAGAATCCGACGGGGAAGTACCCCCGGAGCTGATGATG
GACGATGACACGGACTGAGGGAAGTACCCCCGGAGCTGATGATGGACGAT
GACACGGACTGA
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