mRNA_E-fasciculatus_F_contig15161.3656.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15161.3656.1
Unique NamemRNA_E-fasciculatus_F_contig15161.3656.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15161.3656.1 vs. uniprot
Match: A0A6H5KN12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN12_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 2.220e-49
Identity = 108/154 (70.13%), Postives = 112/154 (72.73%), Query Frame = 1 
Query:    4 LLSALLLLVRGETAAAPPAAFAGGYRLRLAVSESCGRTLLSAGGGGISYRDRDRVCLMAAAGEDKEEEKMELAAEVVGAMTKATVGFAVDRAAATVSEEQGLPPRTRPASQQESAGTKRSALVGLLGNFVAFLKADDVPSPPGHSPTSTAEGRQ 465
            LLSALLLLV G+TAAAPPA F GG RLRLA                    +RDRVCLMA         KMELAAEVVGA+TKATVGFAVDRAAATVSEEQGLPPRTR ASQQE AG KR ALVGLLGNFVAFLK DD  SPPG+ PT TAEGRQ
Sbjct:    2 LLSALLLLVMGKTAAAPPATFVGGCRLRLAAXXXXXXXXXXXX---XXSHNRDRVCLMAXXXXXXXXXKMELAAEVVGAVTKATVGFAVDRAAATVSEEQGLPPRTRAASQQEWAGAKRKALVGLLGNFVAFLKTDDDASPPGNPPTLTAEGRQ 152
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BLAST of mRNA_E-fasciculatus_F_contig15161.3656.1 vs. uniprot
Match: D7G9I8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9I8_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 7.230e-27
Identity = 66/77 (85.71%), Postives = 67/77 (87.01%), Query Frame = 1 
Query:    4 LLSALLLLVRGETAAAPPAAFAGGYRLRLAVSESCGRTLLSAGGGGISYRDRDRVCLMAAAGEDKEEE-KMELAAEV 231
            LLS LLLLVRGETAAAPPAAF G  RLRLA SES GRT LSAGGGGISY  R+RVCLMAAAGEDKEEE KMELAAEV
Sbjct:    2 LLSTLLLLVRGETAAAPPAAFVGDCRLRLAASESGGRTALSAGGGGISYA-RNRVCLMAAAGEDKEEEEKMELAAEV 77
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15161.3656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KN12_9PHAE2.220e-4970.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9I8_ECTSI7.230e-2785.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15161contigE-fasciculatus_F_contig15161:2..1398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_002060.1
Exons2
Model size480
Cds size480
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927996.5096936-CDS-E-fasciculatus_F_contig15161:1..2531622927996.5096936-CDS-E-fasciculatus_F_contig15161:1..253Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15161 2..253 -
1695995782.523884-CDS-E-fasciculatus_F_contig15161:1..2531695995782.523884-CDS-E-fasciculatus_F_contig15161:1..253Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15161 2..253 -
1622927996.5245588-CDS-E-fasciculatus_F_contig15161:1170..13981622927996.5245588-CDS-E-fasciculatus_F_contig15161:1170..1398Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15161 1171..1398 -
1695995782.5334427-CDS-E-fasciculatus_F_contig15161:1170..13981695995782.5334427-CDS-E-fasciculatus_F_contig15161:1170..1398Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15161 1171..1398 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15161.3656.1prot_E-fasciculatus_F_contig15161.3656.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15161 2..1398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15161.3656.1

>prot_E-fasciculatus_F_contig15161.3656.1 ID=prot_E-fasciculatus_F_contig15161.3656.1|Name=mRNA_E-fasciculatus_F_contig15161.3656.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=160bp
VLLSALLLLVRGETAAAPPAAFAGGYRLRLAVSESCGRTLLSAGGGGISY
RDRDRVCLMAAAGEDKEEEKMELAAEVVGAMTKATVGFAVDRAAATVSEE
QGLPPRTRPASQQESAGTKRSALVGLLGNFVAFLKADDVPSPPGHSPTST
AEGRQVCRGG
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mRNA from alignment at E-fasciculatus_F_contig15161:2..1398-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15161.3656.1 ID=mRNA_E-fasciculatus_F_contig15161.3656.1|Name=mRNA_E-fasciculatus_F_contig15161.3656.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1397bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15161:2..1398- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGCTTCTCTCCGCATTGCTGCTCCTTGTCAGGGGTGAGACGGCAGCAGC
ACCGCCCGCCGCCTTTGCTGGCGGTTATCGACTCCGGCTGGCTGTATCTG
AGAGCTGTGGTCGCACGTTGTTGTCAGCGGGCGGCGGGGGCATCAGCTAC
CGCGATAGGGACCGGGTTTGCCTCATGGCCGCCGCTGGCGAAGACAAGGA
GGAGGAGAAGATGGAGCTTGCAGCAGAGGTGCGGCGCTCGTTGTTCAACC
TTGCCAATTGATGGTCGATATTGTTGAGAACAAGTACTCTTACTGCTGCG
GTAGTTGCGTATGTAGCGCCGAGGCATGCATGTGTAGTGCGGAGGCATGG
ATGTACTTGCATGTTGCAGATTGCAGCGGGCATTGACACGGCGTACATAC
GTACAGGATACAGCAATGATGTGCGTATATGCGTGCTTAGAAGATACGGT
GTGTGACTGGCTTGCAAAGAGGAAAATTTGGTCGATGTTACGTACCTGCT
GCTATTGCCAATTAATGCCGAGGAGTCATATATATGCAGCATTAGTCTAA
ATATGTAGTTGTCTTTTGCGGCGGAACCCGAGTCATCGGAAAAAAAAAAA
AAAAGCTGCACCCGGGATTGTGAGTCTTGAGAGGACGCGGGGGAGCGCTG
CACCGAGAAGAAGATTAAACGGACCGCTTTCGCGAGGATGTTTTCATTAA
AATAATGAAAAGGAGGGAAGGGGTGTGTGTGTAAAACCCCAACCCTCACC
CAACCCCGTATCCCCTACTTAAGCCAAGGTTGATTTTCTCGCGATTGCTG
CTGGATTGATTCAACTGACTTTCTCGAGCTTGAGAACCCGCACTCGTAAC
AGCGGCAGCAGTAGCACACACAAGCCACCGGCACGCCTTGTACAACGTAG
CACCGGACCTCCACCGCTGCTGTGTCCGAGACGGATCGCTCACCTCTCCC
AACCCCCCCCCCTCGGTTCACTCCTGGCTCATGCTTGTGAAACGTATCTA
TAGCCTGTGCGGGCTTAAAAACGGCGTTGTACATGTATCGCTCCTTCTCG
GCATGCGAGGTCAACGTTTTAACGACTTCGCAACTACGGCATGCGCTGAC
ATAAGTGCCCCCCCCTCCCCTCCTCCACCCCACGGTTGTTCGCAGGTGGT
AGGCGCGATGACGAAAGCGACGGTCGGGTTCGCCGTTGACCGCGCTGCGG
CGACGGTTTCGGAGGAGCAGGGGCTGCCGCCGCGCACCCGACCGGCCTCT
CAGCAGGAATCGGCCGGCACCAAGAGGAGCGCCCTCGTGGGCCTTCTCGG
CAACTTCGTGGCCTTTCTCAAGGCCGATGACGTACCCTCCCCCCCGGGAC
ACTCACCGACGTCGACGGCGGAGGGGCGACAGGTGTGTAGGGGGGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15161:2..1398-

>mRNA_E-fasciculatus_F_contig15161.3656.1 ID=mRNA_E-fasciculatus_F_contig15161.3656.1|Name=mRNA_E-fasciculatus_F_contig15161.3656.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=960bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15161:2..1398- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGCTTCTCTCCGCATTGCTGCTCCTTGTCAGGGGTGAGACGGCAGCAGC
ACCGCCCGCCGCCTTTGCTGGCGGTTATCGACTCCGGCTGGCTGTATCTG
AGAGCTGTGGTCGCACGTTGTTGTCAGCGGGCGGCGGGGGCATCAGCTAC
CGCGATAGGGACCGGGTTTGCCTCATGGCCGCCGCTGGCGAAGACAAGGA
GGAGGAGAAGATGGAGCTTGCAGCAGAGGTGCTTCTCTCCGCATTGCTGC
TCCTTGTCAGGGGTGAGACGGCAGCAGCACCGCCCGCCGCCTTTGCTGGC
GGTTATCGACTCCGGCTGGCTGTATCTGAGAGCTGTGGTCGCACGTTGTT
GTCAGCGGGCGGCGGGGGCATCAGCTACCGCGATAGGGACCGGGTTTGCC
TCATGGCCGCCGCTGGCGAAGACAAGGAGGAGGAGAAGATGGAGCTTGCA
GCAGAGGTGGTAGGCGCGATGACGAAAGCGACGGTCGGGTTCGCCGTTGA
CCGCGCTGCGGCGACGGTTTCGGAGGAGCAGGGGCTGCCGCCGCGCACCC
GACCGGCCTCTCAGCAGGAATCGGCCGGCACCAAGAGGAGCGCCCTCGTG
GGCCTTCTCGGCAACTTCGTGGCCTTTCTCAAGGCCGATGACGTACCCTC
CCCCCCGGGACACTCACCGACGTCGACGGCGGAGGGGCGACAGGTGTGTA
GGGGGGGGGTGGTAGGCGCGATGACGAAAGCGACGGTCGGGTTCGCCGTT
GACCGCGCTGCGGCGACGGTTTCGGAGGAGCAGGGGCTGCCGCCGCGCAC
CCGACCGGCCTCTCAGCAGGAATCGGCCGGCACCAAGAGGAGCGCCCTCG
TGGGCCTTCTCGGCAACTTCGTGGCCTTTCTCAAGGCCGATGACGTACCC
TCCCCCCCGGGACACTCACCGACGTCGACGGCGGAGGGGCGACAGGTGTG
TAGGGGGGGG
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