mRNA_E-fasciculatus_F_contig15.3540.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15.3540.1
Unique NamemRNA_E-fasciculatus_F_contig15.3540.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15.3540.1 vs. uniprot
Match: D8LTK9_ECTSI (Ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTK9_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 1.070e-75
Identity = 127/154 (82.47%), Postives = 132/154 (85.71%), Query Frame = 1 
Query:   91 TPADTTAGDAAHGRLSGGETVHARRYSGTAESGRVAEKEEGEELPALPAGDAENPTTDAGLAEHVGSSEPPLP--DGWEAVDVGDGNIYYHHVPSGLTQWEVPREEDPHEITTAVAATPPDGNSWEEFKTEEGVPFWYNSSTGESSWLSPGHPV 546
            T A   AGDAAHG+LSGGETVH RRYS  AES    EKEEG ELPA PAGDAEN TTDAGLAEHVG SEPPLP  DGWEAVDVGDG+IYYHHV SGLTQWEVPREE+PHEITTA+AATPPDG+ WEEFKTEEGVPFWYNSSTGESSW  PGHP 
Sbjct: 1034 TQAAAVAGDAAHGQLSGGETVHTRRYSEIAESSHGTEKEEGGELPAFPAGDAENATTDAGLAEHVGGSEPPLPLPDGWEAVDVGDGSIYYHHVLSGLTQWEVPREEEPHEITTAMAATPPDGSPWEEFKTEEGVPFWYNSSTGESSWSPPGHPA 1187
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BLAST of mRNA_E-fasciculatus_F_contig15.3540.1 vs. uniprot
Match: A0A7J6RUZ7_PEROL (Uncharacterized protein (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6RUZ7_PEROL)

HSP 1 Score: 63.5 bits (153), Expect = 1.420e-8
Identity = 35/103 (33.98%), Postives = 50/103 (48.54%), Query Frame = 1 
Query:  304 LPDGWEAVDVGDGNIYYHHVPSGLTQWEVP---------REEDPHEITTAVA-----------------ATPPDGNSWEEFKTEEGVPFWYNSSTGESSWLSP 534
            LP GWE     DG  YY++  SG+TQWE+P         +E +  ++   VA                 A P D   WEEFK ++G P++YN+ TG++ W  P
Sbjct:   19 LPAGWEEFTADDGTPYYYNSNSGVTQWELPTQASAVEGVQEVEESKVDDGVAQKNEPAVESKVVEVTKEALPAD---WEEFKADDGTPYYYNTKTGQTQWEYP 118
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15.3540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTK9_ECTSI1.070e-7582.47Ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A7J6RUZ7_PEROL1.420e-833.98Uncharacterized protein (Fragment) n=1 Tax=Perkins... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15contigE-fasciculatus_F_contig15:52495..53046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score260.4
Seed ortholog evalue6.4e-67
Seed eggNOG ortholog2880.D8LTK9
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_003700.3
Exons1
Model size552
Cds size552
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927978.5228374-CDS-E-fasciculatus_F_contig15:52494..530461622927978.5228374-CDS-E-fasciculatus_F_contig15:52494..53046Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15 52495..53046 +
1695995776.1456513-CDS-E-fasciculatus_F_contig15:52494..530461695995776.1456513-CDS-E-fasciculatus_F_contig15:52494..53046Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15 52495..53046 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15.3540.1prot_E-fasciculatus_F_contig15.3540.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15 52495..53046 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15.3540.1

>prot_E-fasciculatus_F_contig15.3540.1 ID=prot_E-fasciculatus_F_contig15.3540.1|Name=mRNA_E-fasciculatus_F_contig15.3540.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=184bp
RSSFVGSVARNVSVSSSSVTGGVSDGDASATPADTTAGDAAHGRLSGGET
VHARRYSGTAESGRVAEKEEGEELPALPAGDAENPTTDAGLAEHVGSSEP
PLPDGWEAVDVGDGNIYYHHVPSGLTQWEVPREEDPHEITTAVAATPPDG
NSWEEFKTEEGVPFWYNSSTGESSWLSPGHPVD*
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mRNA from alignment at E-fasciculatus_F_contig15:52495..53046+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15.3540.1 ID=mRNA_E-fasciculatus_F_contig15.3540.1|Name=mRNA_E-fasciculatus_F_contig15.3540.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=552bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15:52495..53046+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCAGCAGTTTCGTCGGAAGCGTTGCGCGAAATGTCTCTGTGTCTTCGTC
TTCGGTGACCGGCGGGGTTTCTGATGGTGATGCGAGTGCCACCCCTGCTG
ACACCACAGCAGGAGATGCAGCCCACGGCCGGCTATCGGGAGGGGAAACG
GTCCACGCTAGGCGATATTCGGGGACAGCCGAAAGCGGCCGTGTTGCCGA
GAAGGAAGAAGGTGAAGAGCTGCCGGCCTTACCAGCAGGCGACGCAGAAA
ACCCTACTACCGACGCAGGCCTGGCCGAACACGTTGGGAGCAGTGAGCCT
CCTCTTCCGGATGGGTGGGAAGCTGTCGACGTGGGCGACGGGAATATCTA
CTACCACCACGTGCCCTCGGGGCTAACACAGTGGGAGGTGCCGCGCGAAG
AAGATCCGCACGAGATCACAACCGCAGTGGCTGCTACACCACCTGACGGA
AACTCGTGGGAGGAGTTCAAGACTGAGGAAGGCGTGCCGTTTTGGTACAA
CTCTTCGACCGGGGAGAGCAGCTGGTTATCTCCCGGCCACCCCGTGGATT
GA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15:52495..53046+

>mRNA_E-fasciculatus_F_contig15.3540.1 ID=mRNA_E-fasciculatus_F_contig15.3540.1|Name=mRNA_E-fasciculatus_F_contig15.3540.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1104bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15:52495..53046+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCAGCAGTTTCGTCGGAAGCGTTGCGCGAAATGTCTCTGTGTCTTCGTC
TTCGGTGACCGGCGGGGTTTCTGATGGTGATGCGAGTGCCACCCCTGCTG
ACACCACAGCAGGAGATGCAGCCCACGGCCGGCTATCGGGAGGGGAAACG
GTCCACGCTAGGCGATATTCGGGGACAGCCGAAAGCGGCCGTGTTGCCGA
GAAGGAAGAAGGTGAAGAGCTGCCGGCCTTACCAGCAGGCGACGCAGAAA
ACCCTACTACCGACGCAGGCCTGGCCGAACACGTTGGGAGCAGTGAGCCT
CCTCTTCCGGATGGGTGGGAAGCTGTCGACGTGGGCGACGGGAATATCTA
CTACCACCACGTGCCCTCGGGGCTAACACAGTGGGAGGTGCCGCGCGAAG
AAGATCCGCACGAGATCACAACCGCAGTGGCTGCTACACCACCTGACGGA
AACTCGTGGGAGGAGTTCAAGACTGAGGAAGGCGTGCCGTTTTGGTACAA
CTCTTCGACCGGGGAGAGCAGCTGGTTATCTCCCGGCCACCCCGTGGATT
GACGCAGCAGTTTCGTCGGAAGCGTTGCGCGAAATGTCTCTGTGTCTTCG
TCTTCGGTGACCGGCGGGGTTTCTGATGGTGATGCGAGTGCCACCCCTGC
TGACACCACAGCAGGAGATGCAGCCCACGGCCGGCTATCGGGAGGGGAAA
CGGTCCACGCTAGGCGATATTCGGGGACAGCCGAAAGCGGCCGTGTTGCC
GAGAAGGAAGAAGGTGAAGAGCTGCCGGCCTTACCAGCAGGCGACGCAGA
AAACCCTACTACCGACGCAGGCCTGGCCGAACACGTTGGGAGCAGTGAGC
CTCCTCTTCCGGATGGGTGGGAAGCTGTCGACGTGGGCGACGGGAATATC
TACTACCACCACGTGCCCTCGGGGCTAACACAGTGGGAGGTGCCGCGCGA
AGAAGATCCGCACGAGATCACAACCGCAGTGGCTGCTACACCACCTGACG
GAAACTCGTGGGAGGAGTTCAAGACTGAGGAAGGCGTGCCGTTTTGGTAC
AACTCTTCGACCGGGGAGAGCAGCTGGTTATCTCCCGGCCACCCCGTGGA
TTGA
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