mRNA_E-fasciculatus_F_contig1469.3364.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1469.3364.1 vs. uniprot
Match: A0A6H5K6J9_9PHAE (IF3_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6J9_9PHAE) HSP 1 Score: 804 bits (2076), Expect = 3.380e-281 Identity = 532/747 (71.22%), Postives = 563/747 (75.37%), Query Frame = 1
Query: 61 MASRFLRADLRRACRPPSKLTSSSSRNTFLSLGTTR-DHPSLAPSACNPSALTAAALASPEWLHSSVQSSSHAHSELATTRSGSVEHGLRLPVPVTVTGMLPTPALTSAGEQRDAYVGCWKG-AVGLGLCSRQSRQQQQAGRRFLSSRSSKAGGQTLTNEKIRAGKILLVLETKDGSKEVTVVSRQQALAAANAANLDLVQVSTGKNDQVVCRLMDFKKEEYRKKKQKKANAKRIQKKKEIRLGGMIADHDFDRKVNDVKKYLERGDLVKVVLEANISLLKRSGNCLNVLQEKFEEQMEGYEGVVLKHSGGGNGYTRREIECIPKTVRPTXXXXXXXAPEAPGGDGGTIPEAGEKENLKPPPPRSGVVDKDVMREILRGAAETAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDDVTESVSPLQLGSTVISLDDVELYSDLVDETVDNDVDLDLERERNEARRXXXXXXXXXXXXK--NAARYDSMRGXXXXXARKKWKAEIGREGGRDGDNFDGESGWGEKDDRRTARRAPKGREKQDSGRRGVAGGDRRAGASGRGDSPKGWSTGGGRRDGPVSNVSQQNRAGSFRRGGVRTSDG---PRVGPPPPSPARAVRKPYKWRTSIADAKVAEAGGDRDEASAKPWYSRSSSAASLARAARTNDGSGANAAT--EEIRGFKARLGGGSVNPMPANPVAAGTAKATSRQGFRSSSVTASPVKVKPPRVSETGSDQGVGGEE 2274
MASRFLRADLRR RP + TSS+S N FLSL TTR D PS+APSA +PSALTAAAL S EWL SSVQSS HAHSE AT+RSGS EHG RLP+PVT GM ALTSA EQR YVGCW+G AVGLGLCSRQ QQQAG+RFLSSRS KAGGQTLTN+KI+A KILLVLET+DGSK T VSRQQALAAANA NLDLVQVS+G+NDQVVCRLMDFKKEEYRKKKQ+KANAKRIQKKKEIRL GMIADHDF RKVNDVKKYLERGD+VKVVLEANISLLKRSGNCLNVLQEKFEEQME YEG VLKHSGGGNGYTRREIECIPKTVRPT A EAPG DGG IPEAGEKEN PPP R GVVDK V+ E++ GAA TA G XXXXXXXXXXXXXXXXXXXXXXX +DV E+ SPL+LGST I LDDVELY DLVDETV +D D+ ERERNEARR K NAARY RGXXXXX KAEI NFD ESGWGEKDDRRTARR P GR++Q GRRGVAGGD RAGAS G SPK WSTGGGRRDG NV QQ AGSFRRG R SDG PR GPPP SPA A R PYKWRTSIADAKV EAGGDR+ SAKPWY+ EE+RGFKAR GGGS+N P N VA TAKATS QGFRSSSVTA KV PP+ SE GSD+GV GEE
Sbjct: 1 MASRFLRADLRRVFRPLGRPTSSNS-NAFLSLATTRPDEPSVAPSAYSPSALTAAALDSSEWLCSSVQSSGHAHSESATSRSGSSEHGPRLPLPVT--GMFL--ALTSA-EQR--YVGCWRGGAVGLGLCSRQ---QQQAGKRFLSSRSGKAGGQTLTNKKIKAEKILLVLETEDGSKTATTVSRQQALAAANAVNLDLVQVSSGRNDQVVCRLMDFKKEEYRKKKQRKANAKRIQKKKEIRLRGMIADHDFGRKVNDVKKYLERGDVVKVVLEANISLLKRSGNCLNVLQEKFEEQMEEYEGAVLKHSGGGNGYTRREIECIPKTVRPTTAKPTTSASEAPGRDGGGIPEAGEKENPIPPPSRGGVVDKHVVLEVVSGAAATAHGGSEGELSSSNSGXXXXXXXXXXXXXXXXXXXXXXXXEDVAETASPLKLGSTEILLDDVELYDDLVDETVYDDGDI--ERERNEARRREDRQKREEAKEKVRNAARYAPTRGXXXXXXXXXXKAEIDXXXXXXXXNFDEESGWGEKDDRRTARRVPTGRDQQTGGRRGVAGGDSRAGASDSGGSPKVWSTGGGRRDGSFPNVLQQG-AGSFRRGDRRGSDGGSGPREGPPPSSPALAARAPYKWRTSIADAKVVEAGGDREGTSAKPWYTSXXXXXXXXXXXXXXXXXXXXXXXXXEEVRGFKARFGGGSMNLTPTNSVAVRTAKATSSQGFRSSSVTAPSAKVNPPKASEVGSDRGVDGEE 733
BLAST of mRNA_E-fasciculatus_F_contig1469.3364.1 vs. uniprot
Match: D7FJ50_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ50_ECTSI) HSP 1 Score: 165 bits (417), Expect = 2.580e-44 Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 1
Query: 697 MDFKKEEYRKKKQKKANAKRIQKKKEIRLGGMIADHDFDRKVNDVKKYLERGDLVKVVLEANISLLKRSGNCLNVLQEKFEEQMEGYEGVVL 972
MDFKKEEYRKKKQKKANAKRIQKKKEIRLGGMIADHDF RKVNDVKKYLERGD+VKVVLEANISLLKRSGNCLNVLQEKFEEQME YEGV +
Sbjct: 1 MDFKKEEYRKKKQKKANAKRIQKKKEIRLGGMIADHDFGRKVNDVKKYLERGDVVKVVLEANISLLKRSGNCLNVLQEKFEEQMEEYEGVRM 92
BLAST of mRNA_E-fasciculatus_F_contig1469.3364.1 vs. uniprot
Match: UPI000C7C0A36 (translation initiation factor IF-3 n=1 Tax=Salirhabdus sp. Marseille-P4669 TaxID=2042310 RepID=UPI000C7C0A36) HSP 1 Score: 79.0 bits (193), Expect = 3.800e-13 Identity = 52/119 (43.70%), Postives = 78/119 (65.55%), Query Frame = 1
Query: 514 GQTLTNEKIRAGKILLVLETKDGSKEVTVVSRQQALAAANAANLDLVQVSTGKNDQVVCRLMDFKKEEYRKKKQKKANAKR--IQKKKEIRLGGMIADHDFDRKVNDVKKYLERGDLVK 864
G+TL NEKIRA ++ L+ KDG +++ V SRQ+AL A A LDLV V+ V CR+MD+ K + ++K++K N K+ + KE+RL I +HDF+ K+ + +K+LE+GD VK
Sbjct: 13 GETLINEKIRAREVRLI--GKDG-EQIGVKSRQEALEIAERAELDLVMVAPNAKPPV-CRIMDYGKYRFEQQKKEKENRKKQKVINVKEVRLSPAIEEHDFNTKLRNARKFLEKGDKVK 127
BLAST of mRNA_E-fasciculatus_F_contig1469.3364.1 vs. uniprot
Match: A0A1V4I734_9FIRM (Translation initiation factor IF-3 n=1 Tax=[Clostridium] thermoalcaliphilum TaxID=29349 RepID=A0A1V4I734_9FIRM) HSP 1 Score: 72.8 bits (177), Expect = 5.770e-11 Identity = 52/123 (42.28%), Postives = 73/123 (59.35%), Query Frame = 1
Query: 529 NEKIRAGKILLVLETKDGSKEVTVVSRQQALAAANAANLDLVQVSTGKNDQVVCRLMDF--------KKEEYRKKKQKKANAKRIQKKKEIRLGGMIADHDFDRKVNDVKKYLERGDLVKVVL 873
NE+IR +I ++L DG +++ ++S ++A A NLDLV++S N V C++MDF KKE+ KKKQK N K EIRL +I +HD K N KK+LE+GD VKVV+
Sbjct: 24 NEQIRDKEIRVIL---DGGEQLGIMSAKEAQLIATQKNLDLVKISPNANPPV-CKIMDFGKYKYEQSKKEKXSKKKQKVINVK------EIRLRPVIEEHDLTTKGNQAKKFLEKGDKVKVVV 136
BLAST of mRNA_E-fasciculatus_F_contig1469.3364.1 vs. uniprot
Match: UPI00048C0F73 (translation initiation factor IF-3 n=3 Tax=Thalassobacillus TaxID=331971 RepID=UPI00048C0F73) HSP 1 Score: 71.6 bits (174), Expect = 9.460e-11 Identity = 58/155 (37.42%), Postives = 89/155 (57.42%), Query Frame = 1
Query: 529 NEKIRAGKILLVLETKDGSKEVTVVSRQQALAAANAANLDLVQVSTGKNDQVVCRLMDFKKEEY-RKKKQKKANAKRIQ-KKKEIRLGGMIADHDFDRKVNDVKKYLERGDLVKVVL----------EANISLLKRSGN-CLNVLQEKFEEQMEG 954
NEKIRA ++ L+ + +++ V SRQ+AL A ANLDLV V+ V CR+MD+ K + ++KK K+A K+ K KE+RL I +HDF+ K+ + +K+LE+GD VK + E +L+R C +V Q + + +MEG
Sbjct: 4 NEKIRAREVRLI---DNNGEQLGVKSRQEALEIAQNANLDLVLVAPNAKPPV-CRIMDYGKYRFEQQKKDKEARKKQTTIKVKEVRLSPGIEEHDFNTKLRNARKFLEKGDKVKASVRFRGRAITHKELGQKVLERMAEECKDVAQVETKPKMEG 154
BLAST of mRNA_E-fasciculatus_F_contig1469.3364.1 vs. uniprot
Match: A0A6B9YDN8_9BACI (Translation initiation factor IF-3 n=4 Tax=Bacillaceae TaxID=186817 RepID=A0A6B9YDN8_9BACI) HSP 1 Score: 72.0 bits (175), Expect = 1.090e-10 Identity = 52/124 (41.94%), Postives = 78/124 (62.90%), Query Frame = 1
Query: 514 GQTLTNEKIRAGKILLVLETKDGSKEVTVVSRQQALAAANAANLDLVQVSTGKNDQVVCRLMDFKKEEYRKKKQKKANAKRIQKK----KEIRLGGMIADHDFDRKVNDVKKYLERGDLVKVVL 873
G+TL NE+IRA ++ L+ DG +++ V SRQ+AL A+ ANLDLV V+ V CR+MD+ K YR ++QKK +K KE+RL I +HDF+ K+ + +K+L++GD VK +
Sbjct: 19 GETLINERIRAREVRLI--GADG-EQIGVKSRQEALKIADQANLDLVLVAPNAKPPV-CRIMDYGK--YRFEQQKKEXXXXXXQKVINIKEVRLSPAIEEHDFNTKLRNARKFLQKGDKVKAAV 136
BLAST of mRNA_E-fasciculatus_F_contig1469.3364.1 vs. uniprot
Match: V6J0U9_9BACL (Translation initiation factor IF-3 n=11 Tax=Sporolactobacillus TaxID=2077 RepID=V6J0U9_9BACL) HSP 1 Score: 71.2 bits (173), Expect = 1.290e-10 Identity = 53/143 (37.06%), Postives = 83/143 (58.04%), Query Frame = 1
Query: 523 LTNEKIRAGKILLVLETKDGSKEVTVVSRQQALAAANAANLDLVQVSTGKNDQVVCRLMDFKK---EEYRKKKQKKANAKRIQKKKEIRLGGMIADHDFDRKVNDVKKYLERGDLVKVVLEANISLLKRSGNCLNVLQEKFEE 942
+ NE IRA ++ L+ + ++V + S+ +ALA A+ NLDLV V+ G V CR+MD+ K E+ +K+++ + N K I K EIRL I +HDF+ K+ + KK+LE+GD VK + + S VL++ EE
Sbjct: 2 IVNEGIRAQQVRLIGQN---GEQVGIKSKAEALAMAHNVNLDLVMVAPGAKPPV-CRIMDYGKFRFEQQKKEREARKNQKVINLK-EIRLSPSIEEHDFNTKMRNAKKFLEKGDKVKASVRFRGRAITHSNLGKQVLEKLAEE 139
BLAST of mRNA_E-fasciculatus_F_contig1469.3364.1 vs. uniprot
Match: A0A4Q4JJ08_9BACL (Translation initiation factor IF-3 n=1 Tax=Sporolactobacillus sp. THM7-7 TaxID=2511172 RepID=A0A4Q4JJ08_9BACL) HSP 1 Score: 70.9 bits (172), Expect = 1.710e-10 Identity = 55/159 (34.59%), Postives = 89/159 (55.97%), Query Frame = 1
Query: 523 LTNEKIRAGKILLVLETKDGSKEVTVVSRQQALAAANAANLDLVQVSTGKNDQVVCRLMDFKKEEYRKKKQKKANAKRIQKK----KEIRLGGMIADHDFDRKVNDVKKYLERGDLVKV--------VLEANIS---LLKRSGNCLNVLQEKFEEQMEG 954
+ NE IRA K+ L+ + +++ + S+ +AL A+ NLDLV V+ G V CR+MD+ K YR ++QKK R ++K KEIRL I +HDF+ K+ + KK+L++GD VK + +N+ L K + +C ++ + +MEG
Sbjct: 1 MINEGIRASKVRLIGQN---GEQIGIKSKNEALTIASRVNLDLVMVAPGAKPPV-CRIMDYGK--YRYEQQKKEREARKKQKVINIKEIRLSPSIEEHDFNTKMRNAKKFLQKGDKVKASVRFRGRAITHSNLGRQVLEKLAESCADISVIEARPKMEG 153
BLAST of mRNA_E-fasciculatus_F_contig1469.3364.1 vs. uniprot
Match: A0A4Q4IMJ1_9BACL (Translation initiation factor IF-3 n=1 Tax=Sporolactobacillus sp. THM7-4 TaxID=2511170 RepID=A0A4Q4IMJ1_9BACL) HSP 1 Score: 70.9 bits (172), Expect = 1.750e-10 Identity = 55/142 (38.73%), Postives = 80/142 (56.34%), Query Frame = 1
Query: 529 NEKIRAGKILLVLETKDGSKEVTVVSRQQALAAANAANLDLVQVSTGKNDQVVCRLMDFKKEEYRKKKQKKANAKRIQKK----KEIRLGGMIADHDFDRKVNDVKKYLERGDLVKVVLEANISLLKRSGNCLNVLQEKFEE 942
NE IRA ++ L+ + ++V + SR +ALA A NLDLV V+ G V CR+MD+ + YR ++QKK R +K KEIRL I +HDF+ K+ + KK+LE+GD VK + + S VL++ EE
Sbjct: 4 NEGIRAQQVRLIGQN---GEQVGIKSRTEALAMARQVNLDLVMVAPGARPPV-CRIMDYGR--YRYEQQKKDREARKNQKVISIKEIRLSPSIEEHDFNTKMRNAKKFLEKGDKVKASVRFRGRAITHSDLGRQVLEKLAEE 139
BLAST of mRNA_E-fasciculatus_F_contig1469.3364.1 vs. uniprot
Match: A0A345PI24_9BACI (Translation initiation factor IF-3 n=4 Tax=Oceanobacillus TaxID=182709 RepID=A0A345PI24_9BACI) HSP 1 Score: 70.5 bits (171), Expect = 2.430e-10 Identity = 51/123 (41.46%), Postives = 70/123 (56.91%), Query Frame = 1
Query: 529 NEKIRAGKILLVLETKDGSKEVTVVSRQQALAAANAANLDLVQVSTGKNDQVVCRLMDF--------KKEEYRKKKQKKANAKRIQKKKEIRLGGMIADHDFDRKVNDVKKYLERGDLVKVVL 873
NEKIRA ++ L+ D ++ V +RQ+AL A NLDLV V+ G V CR+MDF KKE+ +KKQK N K E+R I +HDF+ K+ + KK+LE+GD VK +
Sbjct: 5 NEKIRAREVRLIDSNGD---QLGVKTRQEALEIAQTRNLDLVMVAPGAKPPV-CRIMDFGKHRFELQKKEKEARKKQKVINIK------EVRFTPGIGEHDFETKLKNAKKFLEKGDKVKAAV 117 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1469.3364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1469.3364.1 >prot_E-fasciculatus_F_contig1469.3364.1 ID=prot_E-fasciculatus_F_contig1469.3364.1|Name=mRNA_E-fasciculatus_F_contig1469.3364.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=739bp MASRFLRADLRRACRPPSKLTSSSSRNTFLSLGTTRDHPSLAPSACNPSAback to top mRNA from alignment at E-fasciculatus_F_contig1469:1311..7259+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1469.3364.1 ID=mRNA_E-fasciculatus_F_contig1469.3364.1|Name=mRNA_E-fasciculatus_F_contig1469.3364.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5949bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1469:1311..7259+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1469:1311..7259+ >mRNA_E-fasciculatus_F_contig1469.3364.1 ID=mRNA_E-fasciculatus_F_contig1469.3364.1|Name=mRNA_E-fasciculatus_F_contig1469.3364.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=4434bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1469:1311..7259+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |