mRNA_E-fasciculatus_F_contig1460.3316.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1460.3316.1
Unique NamemRNA_E-fasciculatus_F_contig1460.3316.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1460.3316.1 vs. uniprot
Match: D7FQ03_ECTSI (Elongation factor Ts, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ03_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.730e-30
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    1 RLRKYLETNALTRQAHMVAEGNPRVADHLTSLGEEVGGTVTLEGFARLAVGEREPAPTSSN 183
            RLRKYLETNALTRQAHMVAEGNPRVADHLTSLGEEVGGTVTLEGFARLAVGEREPAP+SS+
Sbjct:  306 RLRKYLETNALTRQAHMVAEGNPRVADHLTSLGEEVGGTVTLEGFARLAVGEREPAPSSSD 366
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1460.3316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQ03_ECTSI1.730e-3096.72Elongation factor Ts, mitochondrial n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1460contigE-fasciculatus_F_contig1460:17643..17828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.4
Seed ortholog evalue6e-25
Seed eggNOG ortholog2880.D7FQ03
KEGG koko:K02357
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0031974,GO:0032543,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0071704,GO:0097159,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.translation elongation factor activity
EggNOG OGsCOG0264@1,KOG1071@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927947.4220686-CDS-E-fasciculatus_F_contig1460:17642..178281622927947.4220686-CDS-E-fasciculatus_F_contig1460:17642..17828Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1460 17643..17828 -
1695995761.9590034-CDS-E-fasciculatus_F_contig1460:17642..178281695995761.9590034-CDS-E-fasciculatus_F_contig1460:17642..17828Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1460 17643..17828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1460.3316.1prot_E-fasciculatus_F_contig1460.3316.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1460 17643..17828 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1460.3316.1

>prot_E-fasciculatus_F_contig1460.3316.1 ID=prot_E-fasciculatus_F_contig1460.3316.1|Name=mRNA_E-fasciculatus_F_contig1460.3316.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=62bp
RLRKYLETNALTRQAHMVAEGNPRVADHLTSLGEEVGGTVTLEGFARLAV
GEREPAPTSSN*
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mRNA from alignment at E-fasciculatus_F_contig1460:17643..17828-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1460.3316.1 ID=mRNA_E-fasciculatus_F_contig1460.3316.1|Name=mRNA_E-fasciculatus_F_contig1460.3316.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=186bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1460:17643..17828- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGTTGAGAAAGTATTTGGAGACCAACGCCCTGACTAGACAGGCGCACAT
GGTGGCCGAGGGGAACCCGAGGGTGGCCGACCACCTCACGAGCTTGGGAG
AGGAGGTCGGTGGCACGGTCACGTTGGAGGGCTTCGCGAGGCTAGCAGTG
GGGGAGAGAGAACCAGCCCCGACTTCGAGCAATTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1460:17643..17828-

>mRNA_E-fasciculatus_F_contig1460.3316.1 ID=mRNA_E-fasciculatus_F_contig1460.3316.1|Name=mRNA_E-fasciculatus_F_contig1460.3316.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=372bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1460:17643..17828- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGTTGAGAAAGTATTTGGAGACCAACGCCCTGACTAGACAGGCGCACAT
GGTGGCCGAGGGGAACCCGAGGGTGGCCGACCACCTCACGAGCTTGGGAG
AGGAGGTCGGTGGCACGGTCACGTTGGAGGGCTTCGCGAGGCTAGCAGTG
GGGGAGAGAGAACCAGCCCCGACTTCGAGCAATTGAAGGTTGAGAAAGTA
TTTGGAGACCAACGCCCTGACTAGACAGGCGCACATGGTGGCCGAGGGGA
ACCCGAGGGTGGCCGACCACCTCACGAGCTTGGGAGAGGAGGTCGGTGGC
ACGGTCACGTTGGAGGGCTTCGCGAGGCTAGCAGTGGGGGAGAGAGAACC
AGCCCCGACTTCGAGCAATTGA
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