mRNA_E-fasciculatus_F_contig14598.3309.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14598.3309.1
Unique NamemRNA_E-fasciculatus_F_contig14598.3309.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14598.3309.1 vs. uniprot
Match: D8LK31_ECTSI (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK31_ECTSI)

HSP 1 Score: 317 bits (813), Expect = 2.040e-105
Identity = 173/201 (86.07%), Postives = 178/201 (88.56%), Query Frame = 1 
Query:    1 EQNFSNYSAFHFFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDGADSC-DSERYENVLRAEAATLGELIEVEGRCKWAEVALLLVSQRLANALDPRPQPPPRSQGDEXXXXXXXXXXXXXXXDGSSKEAAEVRESCRGMAARLSELDPMHGRFYEFVEKGGAVMGGEMERGSACEADR 600
            +QNFSNYSAFHF RSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDG DSC DSERYEN+LRAEAATLGELIEVE RCKWAEVALLLVSQRLANAL+PRPQPP R+Q     XXXXXXXXX       S EA EVRESCRGMAARLSELDPMHGRFYEFVEKGG VMGG+  RGSA EADR
Sbjct:  205 KQNFSNYSAFHF-RSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDGTDSCSDSERYENILRAEAATLGELIEVEVRCKWAEVALLLVSQRLANALEPRPQPP-RAQD----XXXXXXXXXVTAAGNGSTEAGEVRESCRGMAARLSELDPMHGRFYEFVEKGGTVMGGQQMRGSAREADR 399
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14598.3309.1 vs. uniprot
Match: A0A835Z1Z5_9STRA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Z5_9STRA)

HSP 1 Score: 103 bits (257), Expect = 5.860e-23
Identity = 61/178 (34.27%), Postives = 84/178 (47.19%), Query Frame = 1 
Query:    4 QNFSNYSAFHFFRSKVLPRMVEEAGHDR-WQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDGADSCDS-ERYENVLRAEAATLGELIEVEGRCKWAEVALLLVSQRLANALDPRPQPPPRSQGDEXXXXXXXXXXXXXXXDGSSKEAAEVRESCRGMAARLSELDPMHGRFYE 531
            +NFSNYSAFH+ RSK+LP + E  G      L+  EL++ H A FTEP DQS WWYH FL+ WA +     +  ++Y  +L+ E   + EL+ VE RCKWA V L  +   LA                                     E  E+    R +   L ++DPMH  +Y+
Sbjct:  189 ENFSNYSAFHY-RSKLLPAVAEARGAGGVLTLVEQELEMVHQAFFTEPDDQSAWWYHRFLVGWAAEALHGTEHHDKYPELLQKEVDCIRELLFVEERCKWALVTLHHLLCALARTAQ-------------------------------DTEGVELMAEARSLVTTLVDVDPMHKSYYD 334
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14598.3309.1 vs. uniprot
Match: A0A7S2UPE6_9STRA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UPE6_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 6.180e-19
Identity = 55/120 (45.83%), Postives = 75/120 (62.50%), Query Frame = 1 
Query:    1 EQNFSNYSAFHFFRSKVLPR-MVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWA---DDGADSCDSERYE--NVLRAEAATLGELIEVE-GRCKWAEVALLLVSQRLAN 339
            + NFSN SAFH+ RSK+LP  ++     D+  L  +EL+L  +A+FTEP DQ+ WWYH FLL WA   ++ AD+ D+ + E   +L  EA TL +LIE E  +CKW  +AL  V   L N
Sbjct:  314 DANFSNCSAFHY-RSKLLPWVLIHSDDSDKLALAKEELELVQNAIFTEPDDQTAWWYHRFLLQWAQPNNNDADNDDNVQKEFCQLLEQEAETLRDLIETEENQCKWGFLALHAVLVLLQN 432
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14598.3309.1 vs. uniprot
Match: A0A6S8XW41_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8XW41_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.030e-17
Identity = 44/118 (37.29%), Postives = 74/118 (62.71%), Query Frame = 1 
Query:    4 QNFSNYSAFHFFRSKVLPRM-VEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWA-DDGADSCDSERYENVLRAEAATLGELIEVE-GRCKWAEVALLLVSQRLANALD 348
            QNFSN SAFH+ RSK+LP +  E       +++++EL++  +A+FTEP DQ+ WWY  F+L+W  D+   + D E Y+ +L  E  ++ +L++ E G+CKW  + L +++      L+
Sbjct: 1045 QNFSNGSAFHY-RSKLLPLIHTENESRLTSEVINEELEIIRNAVFTEPDDQTSWWYFRFILSWMRDESTKTLDDEEYKRILYQEWESIHDLVDAEDGQCKWGLLGLHMIATAFCKKLE 1161
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14598.3309.1 vs. uniprot
Match: A0A7S1ZUZ6_TRICV (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZUZ6_TRICV)

HSP 1 Score: 87.0 bits (214), Expect = 2.730e-17
Identity = 56/146 (38.36%), Postives = 76/146 (52.05%), Query Frame = 1 
Query:    1 EQNFSNYSAFHFFRSKVLPRMV-------EEAGHD--------RWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWA-------------------DDGADSCDSERYENVLRAEAATLGELIEVEG-RCKWAEVALLLVSQRL 333
            E NFSN SAFH+ RSK+LP M+       EE G +        R  L  +ELDL  DA +TEP DQ+ WWYH F+++WA                   D   +  D   + ++L  EA +L +L+E EG RCKW  +AL +V + L
Sbjct:   59 ESNFSNGSAFHY-RSKLLPLMLDMRVRESEEGGEEGEEVAATARIDLAKEELDLVRDAAYTEPDDQTAWWYHRFVVSWASPLTLPHLSHAPAPSSSPPDALLEEEDVLAFVDLLEEEAFSLRDLVEAEGGRCKWGLLALHMVLEVL 203
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14598.3309.1 vs. uniprot
Match: A0A0L0SJX5_ALLM3 (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SJX5_ALLM3)

HSP 1 Score: 86.7 bits (213), Expect = 1.140e-16
Identity = 47/106 (44.34%), Postives = 63/106 (59.43%), Query Frame = 1 
Query:    4 QNFSNYSAFHFFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDGADSCDSERYENVLRAEAATLGELIEVEGRCKWAEVALLLV 321
            QNFSN+SA+H  RSK+    +++        L+DELDL H+A++TEP DQS W YH +LL  A    D  D+     V RAE A + EL E+E  CKW   AL+ +
Sbjct:  182 QNFSNFSAWHQ-RSKLFAEWLQQTNRAFPDALNDELDLLHNAVYTEPNDQSAWLYHKWLLAQA---VDRLDASALAAVRRAELAVIEELAELESECKWVLGALVFL 283
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14598.3309.1 vs. uniprot
Match: UPI000867BEEE (protein prenylyltransferase n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=UPI000867BEEE)

HSP 1 Score: 79.3 bits (194), Expect = 5.190e-14
Identity = 56/190 (29.47%), Postives = 90/190 (47.37%), Query Frame = 1 
Query:    1 EQNFSNYSAFHFFRSKVLPRMVEEAGH--DRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDGADSCDS-------ERYENVLRAEAATLGELIEVEGRCKWAEVALLLVSQRLANALDPRPQPPPRSQGDEXXXXXXXXXXXXXXXDGSSKEAAEVRESCRGMAARLSELDPMHGRFYEFVEK 543
            ++N SN+SA+H  R+ ++P+++    +   + ++L+ ELDL H A++T+PAD S W YH +LL+     ADS  S       E+ E +LRAE   + EL ++E   KW  ++L+   Q LA                                 G +    E +   R M  RL E+DP+    YE+ E+
Sbjct:  190 QKNLSNFSAWHH-RASLIPKLLSRGQNLTSKEEVLAKELDLLHQAIYTDPADSSSWIYHQYLLSSLTKPADSMPSLTPMDVGEKIE-LLRAEIGVIQELSDMEPEEKWPLLSLVHYKQMLAEL------------------------------SGDADTDEEGKHEIREMLQRLKEIDPLRKGRYEYWEQ 347
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14598.3309.1 vs. uniprot
Match: A0A6U3VH48_9STRA (Geranylgeranyl transferase type-2 subunit alpha n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3VH48_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 6.630e-14
Identity = 50/140 (35.71%), Postives = 73/140 (52.14%), Query Frame = 1 
Query:    4 QNFSNYSAFHFFRSKVLP-----RMVEEAG---------HDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWA------------DDGADSCDSERYENVLRAEAATLGELIEVEGR----CKWAEVALLLVSQRL 333
            +NFSN SAFH+ RSK+LP     R+ E  G          +R  L  +EL+L  +A+FTEP DQ+ WWYH F++TWA            D+   S   + Y  +L+ EA  + +LI  E      CKW  +AL ++ + +
Sbjct:  343 KNFSNCSAFHY-RSKLLPLELNRRIQENLGTATSLADVYEERLDLSQEELELVQNAIFTEPDDQTAWWYHRFVVTWASPITILKKNMEEDEDDKSAIIQAYLALLQDEADPIRDLIATEEEDGSGCKWGLLALHMILENI 481
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14598.3309.1 vs. uniprot
Match: A0A7S1D677_CYCTE (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D677_CYCTE)

HSP 1 Score: 75.5 bits (184), Expect = 9.220e-14
Identity = 47/115 (40.87%), Postives = 66/115 (57.39%), Query Frame = 1 
Query:    1 EQNFSNYSAFHFFRSKVLPRMVE---EAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDGADSCDSERYENVLRAEAATLGELIEVEG-RCKWAEVALLLVSQRL 333
            ++NFSN SAFH+ RSK++P +++   E+G     LL  EL+L H+A+FTEP DQ+ WWY  FLL +              + L+ E A L ELIE E  + KW  + L  V  R+
Sbjct:   23 QENFSNGSAFHY-RSKLIPYLLQISPESG-----LLEQELELVHNAIFTEPDDQTAWWYLEFLLPYLS-----------ASTLQEEVALLRELIEAENEQTKWGLLGLYQVYLRM 120
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14598.3309.1 vs. uniprot
Match: A0A8K1CD87_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CD87_PYTOL)

HSP 1 Score: 76.3 bits (186), Expect = 5.560e-13
Identity = 57/176 (32.39%), Postives = 82/176 (46.59%), Query Frame = 1 
Query:    1 EQNFSNYSAFHFFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDGADSCDSERYENVLRAEAATLGELIEVEGRCKWAEVALLLVSQRLANALDPRPQPPPRSQGDEXXXXXXXXXXXXXXXDGSSKEAAEVRESCRGMAARLSELDPMHGRFY 528
            EQNFSNYSA H  RS  LP+ +        ++L DE+ +   A+FTEP DQS W+Y+ +L+T   D   S  SE  E  L ++   L EL+E+E   KW  V L  + +RL+ A             DE                     A++ +E  R    +L  +DP H ++Y
Sbjct:  181 EQNFSNYSALHH-RSITLPKPLTR------EILHDEIGIVQQAVFTEPDDQSAWFYYRWLVTSMLDVVQSEPSEAVE-FLDSQIQWLLELLEMESEAKWVLVTLADLQRRLSVA----------QTEDEA-------------------SASQAKEQSRVYYKQLLSVDPDHAQYY 319
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14598.3309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK31_ECTSI2.040e-10586.07Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A835Z1Z5_9STRA5.860e-2334.27Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A7S2UPE6_9STRA6.180e-1945.83Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A6S8XW41_9STRA2.030e-1737.29Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1ZUZ6_TRICV2.730e-1738.36Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A0L0SJX5_ALLM31.140e-1644.34Geranylgeranyl transferase type-2 subunit alpha n=... [more]
UPI000867BEEE5.190e-1429.47protein prenylyltransferase n=1 Tax=Saitoella comp... [more]
A0A6U3VH48_9STRA6.630e-1435.71Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A7S1D677_CYCTE9.220e-1440.87Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A8K1CD87_PYTOL5.560e-1332.39Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14598contigE-fasciculatus_F_contig14598:1736..3194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score317.4
Seed ortholog evalue4.8e-84
Seed eggNOG ortholog2880.D8LK31
Preferred nameRABGGTA
KEGG koko:K14050,ko:K20306
GOsGO:0003008,GO:0003674,GO:0003824,GO:0004659,GO:0004661,GO:0004663,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005777,GO:0005829,GO:0005886,GO:0005968,GO:0006464,GO:0006605,GO:0006612,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0007600,GO:0007601,GO:0008104,GO:0008150,GO:0008152,GO:0008318,GO:0009987,GO:0010035,GO:0010038,GO:0010941,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016740,GO:0016765,GO:0017016,GO:0017137,GO:0018342,GO:0018344,GO:0019538,GO:0019899,GO:0022607,GO:0031267,GO:0031974,GO:0031981,GO:0032501,GO:0032991,GO:0033036,GO:0034613,GO:0036211,GO:0042221,GO:0042579,GO:0042886,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046686,GO:0046907,GO:0046982,GO:0046983,GO:0048193,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050953,GO:0051020,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090150,GO:0097354,GO:0140096,GO:1901564,GO:1902494,GO:1990234,GO:1990778
EggNOG free text desc.protein geranylgeranylation
EggNOG OGsCOG5536@1,KOG0529@2759
EC2.5.1.60
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01006,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein prenyltransferase, alpha subunit
Ec32 orthologEc-06_007980.1
Exons3
Model size603
Cds size603
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14598.3309.1prot_E-fasciculatus_F_contig14598.3309.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14598 1736..3194 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927946.1753008-CDS-E-fasciculatus_F_contig14598:1735..20441622927946.1753008-CDS-E-fasciculatus_F_contig14598:1735..2044Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14598 1736..2044 -
1695995761.2127032-CDS-E-fasciculatus_F_contig14598:1735..20441695995761.2127032-CDS-E-fasciculatus_F_contig14598:1735..2044Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14598 1736..2044 -
1622927946.1948702-CDS-E-fasciculatus_F_contig14598:2487..26551622927946.1948702-CDS-E-fasciculatus_F_contig14598:2487..2655Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14598 2488..2655 -
1695995761.2336588-CDS-E-fasciculatus_F_contig14598:2487..26551695995761.2336588-CDS-E-fasciculatus_F_contig14598:2487..2655Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14598 2488..2655 -
1622927946.2074118-CDS-E-fasciculatus_F_contig14598:3068..31941622927946.2074118-CDS-E-fasciculatus_F_contig14598:3068..3194Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14598 3069..3194 -
1695995761.2502134-CDS-E-fasciculatus_F_contig14598:3068..31941695995761.2502134-CDS-E-fasciculatus_F_contig14598:3068..3194Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14598 3069..3194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14598.3309.1

>prot_E-fasciculatus_F_contig14598.3309.1 ID=prot_E-fasciculatus_F_contig14598.3309.1|Name=mRNA_E-fasciculatus_F_contig14598.3309.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=201bp
EQNFSNYSAFHFFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPAD
QSVWWYHHFLLTWADDGADSCDSERYENVLRAEAATLGELIEVEGRCKWA
EVALLLVSQRLANALDPRPQPPPRSQGDETNNAGGGVTTTAAAGDGSSKE
AAEVRESCRGMAARLSELDPMHGRFYEFVEKGGAVMGGEMERGSACEADR
*
back to top

mRNA from alignment at E-fasciculatus_F_contig14598:1736..3194-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14598.3309.1 ID=mRNA_E-fasciculatus_F_contig14598.3309.1|Name=mRNA_E-fasciculatus_F_contig14598.3309.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1459bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14598:1736..3194- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAACAGAACTTCAGCAACTACAGCGCGTTCCACTTCTTTCGGAGTAAGGT
TTTGCCGAGGATGGTGGAGGAGGCCGGCCACGACCGGTGGCAGCTGCTGT
CCGACGAGCTAGATCTCACGCATGACGTGAGTATACTACCTGTTACGCTT
CGCTGCAACAACGAACCGTAAGCATTCGAATCGTACGTACCTAGCATACG
CATTTCTTTCTGTTTCGTGAGTCTTTCGTGAGCTTGGTGCCCCTTCATTG
AAAATCTTCGTTCGATGTGTCCTGCGCGTGTTCGTGCACGAGGGTAATGA
GTGCGGGTCTGGTAAATGTGTGTGTGGTTTGAGTGAAGCGCCTGATTCTC
TGATTCTCTACAGATCTAGCGCCACCGGGTGACCCCAATGAAAATGACGC
AAGTCTTGCAGTGTAATGCGAGGGAGTGTGGCTCGTGTGATGCGCTCCGC
GTGTTTCAGCGAGTGCATCGGGCAGGGGGTCGCTTATTGAACCCGAAGTC
TTAAACAGGATTTGACCCCCCCCCTACCCTACACAACAGGCGATGTTCAC
GGAGCCGGCGGACCAGAGCGTTTGGTGGTACCACCACTTCCTCCTCACGT
GGGCGGACGACGGCGCCGACAGCTGCGACTCGGAACGTTACGAGAACGTT
CTCCGCGCGGAGGCGGCCACGCTGGGGGAGCTGATAGAGGTGGAGGGTCG
GTGCAAGGTGGGTGTGTTTGCTCGCGCTTTTGTTAGTCTTGGTGCGGCCA
CCTGGGCGTCTCGTGTGGTAGCTCAAGGGTTCTGCAGCCGGTACTTGACC
GCATCTGTCGGGGAGGGGGGGCGGGAAGGGGACAAGCCTGCTATGTCTTG
CCTGACCCGGCGACGGATATTTGATCCGACCGCCGGTCCACAGCAGTATT
ATAGTAGTAGCATTGGAACAAGTGCTGAGACCAGCGGTGGTGAAATAGTG
CCCTGCCCCCTTTTTACGCATCCTCTCCGCTGGTGGCCGCTCCTACGTCC
TCCGTGATTCATGCTCGCCATTCTTTTTTGGCGCTGCTCAATCCGTGATG
TTTGGTCATCGTTGTACGTACCTCCTCTCGCCTTTTCTCTCCCCCGATCA
ACGACGCTCGCTGCTGTTACGCTCGACCCAACGCGCACGATCTCGAGCAG
TGGGCCGAGGTCGCCCTCCTCCTGGTCTCCCAACGCCTCGCCAACGCTCT
CGATCCACGGCCACAACCGCCGCCGCGGAGCCAGGGCGACGAGACCAACA
ATGCCGGCGGAGGCGTAACTACTACTGCGGCAGCCGGGGACGGCAGCAGC
AAAGAGGCCGCCGAGGTCCGAGAGAGCTGCCGCGGCATGGCGGCACGCCT
GTCGGAGTTGGATCCGATGCACGGCCGCTTCTACGAGTTCGTGGAGAAGG
GCGGGGCTGTGATGGGGGGAGAGATGGAGCGAGGCTCGGCGTGCGAGGCA
GATAGATAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14598:1736..3194-

>mRNA_E-fasciculatus_F_contig14598.3309.1 ID=mRNA_E-fasciculatus_F_contig14598.3309.1|Name=mRNA_E-fasciculatus_F_contig14598.3309.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1206bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14598:1736..3194- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAACAGAACTTCAGCAACTACAGCGCGTTCCACTTCTTTCGGAGTAAGGT
TTTGCCGAGGATGGTGGAGGAGGCCGGCCACGACCGGTGGCAGCTGCTGT
CCGACGAGCTAGATCTCACGCATGACGAACAGAACTTCAGCAACTACAGC
GCGTTCCACTTCTTTCGGAGTAAGGTTTTGCCGAGGATGGTGGAGGAGGC
CGGCCACGACCGGTGGCAGCTGCTGTCCGACGAGCTAGATCTCACGCATG
ACGCGATGTTCACGGAGCCGGCGGACCAGAGCGTTTGGTGGTACCACCAC
TTCCTCCTCACGTGGGCGGACGACGGCGCCGACAGCTGCGACTCGGAACG
TTACGAGAACGTTCTCCGCGCGGAGGCGGCCACGCTGGGGGAGCTGATAG
AGGTGGAGGGTCGGTGCAAGGCGATGTTCACGGAGCCGGCGGACCAGAGC
GTTTGGTGGTACCACCACTTCCTCCTCACGTGGGCGGACGACGGCGCCGA
CAGCTGCGACTCGGAACGTTACGAGAACGTTCTCCGCGCGGAGGCGGCCA
CGCTGGGGGAGCTGATAGAGGTGGAGGGTCGGTGCAAGTGGGCCGAGGTC
GCCCTCCTCCTGGTCTCCCAACGCCTCGCCAACGCTCTCGATCCACGGCC
ACAACCGCCGCCGCGGAGCCAGGGCGACGAGACCAACAATGCCGGCGGAG
GCGTAACTACTACTGCGGCAGCCGGGGACGGCAGCAGCAAAGAGGCCGCC
GAGGTCCGAGAGAGCTGCCGCGGCATGGCGGCACGCCTGTCGGAGTTGGA
TCCGATGCACGGCCGCTTCTACGAGTTCGTGGAGAAGGGCGGGGCTGTGA
TGGGGGGAGAGATGGAGCGAGGCTCGGCGTGCGAGGCAGATAGATAGTGG
GCCGAGGTCGCCCTCCTCCTGGTCTCCCAACGCCTCGCCAACGCTCTCGA
TCCACGGCCACAACCGCCGCCGCGGAGCCAGGGCGACGAGACCAACAATG
CCGGCGGAGGCGTAACTACTACTGCGGCAGCCGGGGACGGCAGCAGCAAA
GAGGCCGCCGAGGTCCGAGAGAGCTGCCGCGGCATGGCGGCACGCCTGTC
GGAGTTGGATCCGATGCACGGCCGCTTCTACGAGTTCGTGGAGAAGGGCG
GGGCTGTGATGGGGGGAGAGATGGAGCGAGGCTCGGCGTGCGAGGCAGAT
AGATAG
back to top