mRNA_E-fasciculatus_F_contig13832.2824.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13832.2824.1 vs. uniprot
Match: A0A6H5JK68_9PHAE (Cysteine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JK68_9PHAE) HSP 1 Score: 384 bits (986), Expect = 2.530e-127 Identity = 203/222 (91.44%), Postives = 209/222 (94.14%), Query Frame = 1
Query: 1 DPARTKEPELALMSSVSDAKKDVKKCLCDDFDTPGAMGALQEVVKNVNKYLEAKERAGEPIVADCVRGAAEYVTKMFKVFGLASPGPALGFSQGGDANGTDAGGVGG-EASREAILGPVLDVLSEFRDKVRGCGRAGDTKGVLAACDHVREELLPGVGVRLEDKGDKAVWKLEDPAVLARERQQREQEQLRRLEAKEETKRKAAEKEARKKIPASEYFRGLK 663
DPARTKEPEL LMSS+SDAKK+VKKCLCDDFDTPGAMGALQE+VK VNKY+EAKERAGEPIVADCVRGAAEYVTK+FKVFGLASPGPALGFSQGGDA G EASREAILGPVLDVLSEFRDKVRGCGRAGDTKGVLAACDHVREELLPGVGVRLEDKGD+AVWKLEDPAVLARERQQREQEQLRRLEAK ETKRKAAEKEARKKIPASEYFRGLK
Sbjct: 390 DPARTKEPELTLMSSLSDAKKEVKKCLCDDFDTPGAMGALQELVKKVNKYIEAKERAGEPIVADCVRGAAEYVTKIFKVFGLASPGPALGFSQGGDAGGXXXXXXXXXEASREAILGPVLDVLSEFRDKVRGCGRAGDTKGVLAACDHVREELLPGVGVRLEDKGDQAVWKLEDPAVLARERQQREQEQLRRLEAKAETKRKAAEKEARKKIPASEYFRGLK 611
BLAST of mRNA_E-fasciculatus_F_contig13832.2824.1 vs. uniprot
Match: A0A835Z463_9STRA (Cysteine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z463_9STRA) HSP 1 Score: 184 bits (466), Expect = 1.010e-50 Identity = 112/223 (50.22%), Postives = 142/223 (63.68%), Query Frame = 1
Query: 1 DPARTKEPELALMSSVSDAKKDVKKCLCDDFDTPGAMGAL-QEVVKNVNKYLEAKERAGEPIVADCVRGAAEYVTKMFKVFGLASPGPALGFSQGGDANGTDAGGVGGEASREAILGPVLDVLSEFRDKVRGCGRAGDTKGVLAACDHVREELLPGVGVRLEDKGDKAVWKLEDPAVLARERQQREQEQLRRLEAKEETKR----KAAEKEARKKIPASEYFR 654
D R E E+AL + + K V+ LCDDFDTP A+ L ++V+ VNKY++ K AG VR A EYVT++FKVFGL + G +GF GG+ SRE +GPVLD LS FR +VR C RAGD+ GV++ACD VR++ LP +GVRLEDKGD+ VWKLEDPAVLA E+ ++E + +R KEE KR KAAEK A+ KIP E FR
Sbjct: 383 DELRLGEGEIALYRKLEECKSGVRAALCDDFDTPTAIKLLASDLVRTVNKYIQEKTDAGLKSHYIVVRTAGEYVTRIFKVFGLVTSGVDMGFDV------EQEGGI----SREEAMGPVLDALSTFRTQVRTCARAGDSAGVISACDQVRDDALPPLGVRLEDKGDQVVWKLEDPAVLAAEKAKKEADAQQRQLEKEEKKRQAAIKAAEKAAKDKIPPCEMFR 595
BLAST of mRNA_E-fasciculatus_F_contig13832.2824.1 vs. uniprot
Match: A0A7S3L6K9_9STRA (Cysteine--tRNA ligase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L6K9_9STRA) HSP 1 Score: 149 bits (377), Expect = 2.920e-38 Identity = 95/211 (45.02%), Postives = 125/211 (59.24%), Query Frame = 1
Query: 28 LALMSSVSDAKKDVKKCLCDDFDTPGAMGALQEVVKNVNKYLEAKERAGEPIVADCVRGAAEYVTKMFKVFGLASPGPALGFSQGGDANGTDAGGVGGEASREAILGPVLDVLSEFRDKVRGCGRAGDTKGVLAACDHVREELLPGVGVRLEDKGDKAVWKLEDPAVLARERQQREQEQLRRLEAKEETKRKAAEKEARKKIPASEYFRGL 660
+ L +++D + V L DDFDTP AM L ++VK N YLE + +V VR A Y+TKMFKVFGL P ++GF G + G GGE +E IL PVLDVL FR VR RAGDT+ +L CD R+ELLP +GVRLEDKG+ +VWKL++PA L RE +Q+ EQ R+ KEA K++P +E+ + L
Sbjct: 393 VTLQQTLTDVQAKVGAALRDDFDTPTAMTKLGDLVKATNVYLETETTQ---VVGLVVRSVASYITKMFKVFGLI-PNDSIGF-------GLEDGSSGGEG-KEEILSPVLDVLMAFRSSVREQARAGDTQAILKLCDKFRDELLPPLGVRLEDKGEVSVWKLDNPADLVREMEQKRFEQERKAXXXXXXXXXXXXKEALKRLPPTEFLKQL 591
BLAST of mRNA_E-fasciculatus_F_contig13832.2824.1 vs. uniprot
Match: A0A7S1XX51_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX51_9STRA) HSP 1 Score: 145 bits (367), Expect = 3.310e-38 Identity = 86/185 (46.49%), Postives = 116/185 (62.70%), Query Frame = 1
Query: 16 KEPELALMSSVSDAKKDVKKCLCDDFDTPGAMGALQEVVKNVNKYLEAKERAGEPIVADCVRGAAEYVTKMFKVFGLASPGPALGFSQGGDANGTDAGGVGGEASREAILGPVLDVLSEFRDKVRGCGRAGDTKGVLAACDHVREELLPGVGVRLEDKG-DKAVWKLEDPAVLARERQQREQEQL 567
++ E+A S++ K+ V LCDDFDTP + L +V+ N Y + E A P V ++ +A Y+TKMF+VFGL +GF G++AG GG ASRE LGP+LDVL+ FR+KVR R+GD+ VL+ACD +R+ L +GVRLED G A WKL+DP L RE +QREQE+L
Sbjct: 137 RQKEIAFESALLAIKQQVHDALCDDFDTPTVLQILLRLVRITNVYSKVFEPA--PPVPLIIKESARYITKMFRVFGLVEGDADMGF-------GSEAGAAGGGASREETLGPLLDVLTAFREKVRAAARSGDSAEVLSACDALRDVDLVELGVRLEDAGAGGARWKLDDPEALKRELEQREQERL 312
BLAST of mRNA_E-fasciculatus_F_contig13832.2824.1 vs. uniprot
Match: A0A7S0C423_9STRA (Cysteine--tRNA ligase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C423_9STRA) HSP 1 Score: 142 bits (357), Expect = 1.190e-35 Identity = 97/216 (44.91%), Postives = 126/216 (58.33%), Query Frame = 1
Query: 25 ELALMSSVSDAKKDVKKCLCDDFDTPGAMGALQEVVKNVNKYLEAKERAG-EPIVADCVRGAAEYVTKMFKVFGLA--SPGPALGFSQGGDANGTDAGGVGGEASREAILGPVLDVLSEFRDKVRGCGRAGDTKGVLAACDHVREELLPGVGVRLEDKGDKAVWKLEDPAVLARERQQREQEQLRRLEAKEETKRKAAE----KEARKKIPASEYF 651
E AL ++ + K V K DDFDTPG + AL +++K++NKYLEA E + ++A VR A +VTK+ KV GL + G +GF +GTD + +RE L P+LDVL FR VR RA D KGVL ACD R++ LP +G+RLEDK +VWKLED A L ER+Q ++L+ KEE KRKA E KE KI EY
Sbjct: 329 EFALDAATTACMKKVDKAFRDDFDTPGVLTALSDLIKDMNKYLEAVEISDTHKVIALVVRRAGLFVTKILKVLGLIPDNSGVEMGFP----FDGTD------DVNREEALAPILDVLMSFRSTVRDAARAKDMKGVLTACDEFRDDDLPPLGIRLEDKTGTSVWKLEDAAKLVLEREQAIAQKLQ----KEEEKRKAVEIAKLKEEAAKISPIEYM 530
BLAST of mRNA_E-fasciculatus_F_contig13832.2824.1 vs. uniprot
Match: A0A812UK10_SYMMI (Cysteine--tRNA ligase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UK10_SYMMI) HSP 1 Score: 140 bits (353), Expect = 5.640e-35 Identity = 84/223 (37.67%), Postives = 135/223 (60.54%), Query Frame = 1
Query: 4 PARTKEPELALMSSVSDAKKDVKKCLCDDFDTPGAMGALQEVVKNVNKYLEAKERAGEPIVADCVRGAAEYVTKMFKVFGLASPGPALGFSQGGDANGTDAGGVGGEASREAILGPVLDVLSEFRDKVRGCGRAGDTKGVLAACDHVREELLPGVGVRLEDKGDK----AVWKLEDPAVLARERQQREQEQLRRLEAKEETKRKAAEKEARKKIPASEYFRGL 660
P + ++ALM K++V+ LCDDFDTP A+G L+++++ VNKY+E+ G +++ R Y+T + + FGL +GFS +++G ++ G ++E +L P LD L++FR+ VR GDT VLAA D +R+++LP +GVR+EDKG +VWKL+DPA L ER+Q+E + + E + E +RK E+E + K+P + FR +
Sbjct: 372 PQHVGQRDVALMQFQEATKENVRAALCDDFDTPTAVGHLKDLIREVNKYIESGV-VGSAVLSSTAR----YITSVLRTFGLVQDDNDIGFSL--ESSGGESAG-----NKEELLAPYLDALTKFRETVRIAAINGDTAAVLAAADCLRDDVLPPLGVRMEDKGSGVDVVSVWKLDDPATLRLEREQKEAVKRAKEEQRAEARRKQLEREEKAKVPPQDMFRSM 582
BLAST of mRNA_E-fasciculatus_F_contig13832.2824.1 vs. uniprot
Match: A0A196SMU0_BLAHN (Cysteine--tRNA ligase n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SMU0_BLAHN) HSP 1 Score: 134 bits (338), Expect = 6.720e-33 Identity = 72/183 (39.34%), Postives = 105/183 (57.38%), Query Frame = 1
Query: 4 PARTKEPELALMSSVSDAKKDVKKCLCDDFDTPGAMGALQEVVKNVNKYLEAKERAGEPIVADCVRGAAEYVTKMFKVFGLASPGPALGFSQGGDANGTDAGGVGGEASREAILGPVLDVLSEFRDKVRGCGRAGDTKGVLAACDHVREELLPGVGVRLEDKGDKAVWKLEDPAVLARERQQR 552
P R E E+A+ +++ ++DV KCLCDDFDT GAM AL+ +V+ +Y+E +VA V A YVT MFKVFGL P ++GF Q GG E +L PV+++LSEFR +V+ + +L CD +R+++LP G+RLED +WKL+D L ER+++
Sbjct: 374 PERWDEKEVAMNAALMKCREDVHKCLCDDFDTEGAMAALEALVRAYYQYVEGASH----VVAPLVTSVAAYVTSMFKVFGLIDPEVSIGFGQ-----------TGGSVDEETVLTPVVNILSEFRTRVKLA--RNNPAELLRLCDELRDDILPFAGIRLEDTAKGTIWKLQDKETLIAEREEK 539
BLAST of mRNA_E-fasciculatus_F_contig13832.2824.1 vs. uniprot
Match: D8M9S2_BLAHO (Cysteine--tRNA ligase n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M9S2_BLAHO) HSP 1 Score: 134 bits (337), Expect = 7.490e-33 Identity = 73/183 (39.89%), Postives = 108/183 (59.02%), Query Frame = 1
Query: 4 PARTKEPELALMSSVSDAKKDVKKCLCDDFDTPGAMGALQEVVKNVNKYLEAKERAGEPIVADCVRGAAEYVTKMFKVFGLASPGPALGFSQGGDANGTDAGGVGGEASREAILGPVLDVLSEFRDKVRGCGRAGDTKGVLAACDHVREELLPGVGVRLEDKGDKAVWKLEDPAVLARERQQR 552
P R + E+ L + + A+ V CLCDDFDT GAM AL+ +V+ V +YLE + P+V C A +V++MF+VFGL P P +GF+ G +A A REA+L PV+++LS+FR V+ D +L CD +R+++LP VG+RLED + +WKLE L ER+++
Sbjct: 340 PQRWDDAEVQLNAQLDAARTSVHTCLCDDFDTAGAMEALEGLVRAVYRYLETAKHIVAPLVLSC----AGFVSQMFRVFGLIEPEPKIGFAAGEEA-----------ADREAVLSPVVEILSKFRTVVKK--NRADPAALLKLCDEIRDDILPFVGIRLEDTANGTIWKLEAKETLIAEREKK 505
BLAST of mRNA_E-fasciculatus_F_contig13832.2824.1 vs. uniprot
Match: A0A6U0T1A9_9STRA (Cysteine--tRNA ligase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A6U0T1A9_9STRA) HSP 1 Score: 130 bits (328), Expect = 1.800e-31 Identity = 81/185 (43.78%), Postives = 106/185 (57.30%), Query Frame = 1
Query: 10 RTKEPELALMSSVSDAKKDVKKCLCDDFDTPGAMGALQEVVKNVNKYLEAKERAGEPIVADCVRGAAEYVTKMFKVFGLA--SPGPALGFSQGGDANGTDAGGVGGEASREAILGPVLDVLSEFRDKVRGCGRAGDTKGVLAACDHVREELLPGVGVRLEDK-GDKAVWKLEDPAVLARERQQRE 555
R E L +++SD K V L DDFDTP ++ AL ++VK N YL++ V +R AA Y+T +F++FGL S G +GF GG G A E L PVLD L +FR VR R DT GVL+ CD R+++LP +G+RLEDK G K+VWKL DP L +ER+QRE
Sbjct: 392 RWDESARQLQNTLSDIKSRVDAALRDDFDTPASINALSDLVKATNLYLDSCVARQITPVNLLLRNAAVYITHIFRIFGLIPDSAGGEIGFP---------IGGAGDAADLEEALTPVLDSLMQFRASVRDFARVKDTGGVLSECDKFRDDVLPVLGIRLEDKTGGKSVWKLADPNELMKEREQRE 567
BLAST of mRNA_E-fasciculatus_F_contig13832.2824.1 vs. uniprot
Match: A0A485LI47_9STRA (Cysteine--tRNA ligase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LI47_9STRA) HSP 1 Score: 128 bits (322), Expect = 1.250e-30 Identity = 91/220 (41.36%), Postives = 123/220 (55.91%), Query Frame = 1
Query: 25 ELALMSSVSDAKKDVKKCLCDDFDTPGAMGALQEVVKNVNKYLEAKERAGEPIVADCVRGAAEYVTKMFKVFGLASPGPALGFSQGGDANGTDAGGVGGEASREAILGPVLDVLSEFRDKVRGCGRAGDT-----KGVLAACDHVREELLPGVGVRLEDK-GDKAVWKLEDPAVLARERQQREQEQLRRLEAKE----ETKRKAAEKEARKKIPASEYFR 654
E AL SV DAK+ V + L DD DTP A+ LQE+ K+VN+YL A + V+ VR AAEY+T M +VFGL +GF G A G ++E L PVLD+ ++FRD+VR D K ++ CD VR+ LP GVRLED+ G K+VWKL D L +E +Q+E E+ + AK+ E RK AE+ R +I S+ F+
Sbjct: 423 EKALGKSVLDAKEKVHQALADDLDTPRALRLLQELAKDVNRYLAASDAP----VSMAVRAAAEYITHMLRVFGLVPHATDIGFPLDGAAGG----------NQEETLAPVLDIFTDFRDEVRAILFNNDPNVDVKKALMTLCDSVRDTKLPHAGVRLEDRTGGKSVWKLADKDELLKEIRQKEDEKAAKEVAKQQRLAEEARKLAEERERAQIHPSDLFK 628 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13832.2824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13832.2824.1 >prot_E-fasciculatus_F_contig13832.2824.1 ID=prot_E-fasciculatus_F_contig13832.2824.1|Name=mRNA_E-fasciculatus_F_contig13832.2824.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=221bp DPARTKEPELALMSSVSDAKKDVKKCLCDDFDTPGAMGALQEVVKNVNKYback to top mRNA from alignment at E-fasciculatus_F_contig13832:4..2867+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13832.2824.1 ID=mRNA_E-fasciculatus_F_contig13832.2824.1|Name=mRNA_E-fasciculatus_F_contig13832.2824.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2864bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13832:4..2867+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13832:4..2867+ >mRNA_E-fasciculatus_F_contig13832.2824.1 ID=mRNA_E-fasciculatus_F_contig13832.2824.1|Name=mRNA_E-fasciculatus_F_contig13832.2824.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1326bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13832:4..2867+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |