mRNA_E-fasciculatus_F_contig13760.2775.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13760.2775.1
Unique NamemRNA_E-fasciculatus_F_contig13760.2775.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13760.2775.1 vs. uniprot
Match: A0A6H5KBP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBP4_9PHAE)

HSP 1 Score: 459 bits (1181), Expect = 1.870e-150
Identity = 410/586 (69.97%), Postives = 423/586 (72.18%), Query Frame = 1
Query:   58 MSKILVGRSENAIKNRFNSLNAKGLAETRANELMSKLAPEEKAALLNIDSDPPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSKNSGSKVKGGDVDXAGGRSKAGSGRKGANKXXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXXNVDERGDGTREGSNASSALGFGTAAXXXXXXXXXXXXXXXX----DAGVGRSAAMEALMVAARGERTACGGTGDEGNDGGSSWSNSN-NRGGAEAGARWKRGWAPAAGAGAERRGRQETXXXXXXXXAAVAEPGRKAAKRPKGGQARRKTDMARAEAGMSVLAQAAGLLDIEDSVEAADGNSXXXXXXXXXXDAGRNGPDAHGMLATGMVDCRSNFGGGGSYASQY------YGRLQTNGHNGSSAFIDHGSTPPGSXXXXXXXXXXXXXXXXXXX---------------------------------------ASPFGGAXXXCGGRTAGTADAFPVGARGVSSVGGARIIGRNSEYYHVGGESSYGGESGGGERASWGGLP----SSSSSQRWSLHSVPGPWRPYWTGQDGGN 1653
            MSKILVGRSENAIKNRFNSLNAKGLAE RANELMSKLAPEEKAALLNIDSDP AP                         XXXXXXXXXXXXXXXXXX         SKVKGGDVD  GGRSK GSGRK      XXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXX VD R D TR+GSNASSA GFGTAA XXXXXXXXXXXXXXX    DAG GRSAAMEALMVAARGERTACGG+GDEG+DGG  W+ SN  R GAEAGARWKRGW P  G GAERRGRQET         AVAEPGRKAAKRPKGGQARRKTD+ARAEAGMSVLAQAAGLLDIEDSVEAADGNS          DAG+NG DA+ MLA  +VDCRSNFGG G            YGR QT+GHNG+ A+IDHGSTP   XXXXXXXXXXXXXXXXXXX                                       AS +GG XXXCGGRTA  ADAFPVGARG SS   A  IGRNSEYYHVGG+SSYGGESGGGERASWGGLP    SSSS QRWSLHSVPGPWRPY TGQDGGN
Sbjct:    1 MSKILVGRSENAIKNRFNSLNAKGLAEMRANELMSKLAPEEKAALLNIDSDPLAPPRPCSSSSATKKKAGANSTHVGKEKXXXXXXXXXXXXXXXXXX---------SKVKGGDVDGTGGRSKVGSGRK------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDGRDDRTRKGSNASSATGFGTAAGXXXXXXXXXXXXXXXXXXXDAGFGRSAAMEALMVAARGERTACGGSGDEGHDGGDPWNTSNCKRDGAEAGARWKRGWTPVGGEGAERRGRQETAGGSGGG--AVAEPGRKAAKRPKGGQARRKTDIARAEAGMSVLAQAAGLLDIEDSVEAADGNSNNIGGGGGC-DAGQNGLDANVMLAIDLVDCRSNFGGSGXXXXXXXXXXXXYGRHQTSGHNGA-AYIDHGSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGXXXAAGRASSYGGTXXXCGGRTAENADAFPVGARGASSASDATSIGRNSEYYHVGGKSSYGGESGGGERASWGGLPWSSSSSSSPQRWSLHSVPGPWRPYLTGQDGGN 567          
BLAST of mRNA_E-fasciculatus_F_contig13760.2775.1 vs. uniprot
Match: D7FZ02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ02_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 8.210e-36
Identity = 184/507 (36.29%), Postives = 198/507 (39.05%), Query Frame = 1
Query:    1 QEDQILCEAQRQLGNKWSEMSKILVGRSENAIKNRFNSLNAKGLAETRANELMSKLAPEEKAALLNIDSDPPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSKNSGSKVKGGDVDXAGGRSKAGSGRKGANKXXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXXNVDERGDGTREGSNASSALGFGTAAXXXXXXXXXXXXXXXXDAGVGRSAAMEALMVAARGERTACGGTGDEGNDGGSSWSNSNNRGGAEAGARWKRGWAP--AAGAGAERRGRQETXXXXXXXXAAVAEPGRKAAKRPKGGQARRKTDMARAEAGMSVLAQAAGLLDIEDSVEAADGNSXXXXXXXXXXDAGRNGPDAHGMLATGMVDCRSNFGGGGS--YASQYYGRLQTNGHNGSSAFIDHGSTPPGSXXXXXXXXXXXXXXXXXXXASPFGGAXXXCGGRTAGTADAFPVGARGVSSVGGARIIGRNSEYYHVGG 1509
            +EDQILCEAQRQLGNKWSEMSKILVGRSENAIKNRFNSLNAKGLAE RANELMSKLAPEEKAALLNIDSDPPAP                                                                                                                                 +S+A       XXXXXXXXXXXXXX  ++   R                                              W+R W P  A G   E    + T        A     GR+  +    G  RR+                       + V AA   S             R G    G+    +V  R NFG      YA QYYGRLQTNGHNG+ AFIDHGSTPPGS           XXXXXXXX          CGGRTAGTADAFPVGARG SS G A  IGRNSEYYHVGG
Sbjct:  123 EEDQILCEAQRQLGNKWSEMSKILVGRSENAIKNRFNSLNAKGLAEMRANELMSKLAPEEKAALLNIDSDPPAPPRPC----------------------------------------------------------------------------------------------------------------------------TSSTANXXXXXXXXXXXXXXXXXXXXMPESAAPRQ---------------------------------------------WRRSWLPLGARGPPVEAAAERVTTAATRGTIAIATGAGRRRGRTGSEGGPRRQ----------EXXXXXXXXXXPREEVAAAPSQS-------------RGGKRRRGLRGGRLVGKR-NFGXXXXXRYAGQYYGRLQTNGHNGA-AFIDHGSTPPGSASPLPSGPASGXXXXXXXXXXXXXXTGGGCGGRTAGTADAFPVGARGASSAGDATSIGRNSEYYHVGG 435          
BLAST of mRNA_E-fasciculatus_F_contig13760.2775.1 vs. uniprot
Match: A0A7S2FCN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FCN6_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.580e-6
Identity = 28/45 (62.22%), Postives = 40/45 (88.89%), Query Frame = 1
Query:    4 EDQILCEAQRQLGNKWSEMSKILVGRSENAIKNRFNSLNAKGLAE 138
            ED++L +AQRQ+GNKWSE++++L GR+ENA+KNR+NSL  K LA+
Sbjct:    4 EDRVLMDAQRQVGNKWSEIARMLPGRAENAVKNRYNSLITKKLAK 48          
BLAST of mRNA_E-fasciculatus_F_contig13760.2775.1 vs. uniprot
Match: W7TQR3_9STRA (Myb-related protein a n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQR3_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 4.090e-6
Identity = 28/38 (73.68%), Postives = 36/38 (94.74%), Query Frame = 1
Query:    4 EDQILCEAQRQLGNKWSEMSKILVGRSENAIKNRFNSL 117
            ED ILC+AQR+LGNKWSE++K+L GR+EN++KNRFNSL
Sbjct:  260 EDAILCDAQRRLGNKWSEIAKLLPGRAENSVKNRFNSL 297          
BLAST of mRNA_E-fasciculatus_F_contig13760.2775.1 vs. uniprot
Match: K8YTL3_NANGC (V-myb myeloblastosis viral oncogene-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YTL3_NANGC)

HSP 1 Score: 61.6 bits (148), Expect = 4.250e-6
Identity = 28/38 (73.68%), Postives = 36/38 (94.74%), Query Frame = 1
Query:    4 EDQILCEAQRQLGNKWSEMSKILVGRSENAIKNRFNSL 117
            ED ILC+AQR+LGNKWSE++K+L GR+EN++KNRFNSL
Sbjct:  131 EDAILCDAQRRLGNKWSEIAKLLPGRAENSVKNRFNSL 168          
BLAST of mRNA_E-fasciculatus_F_contig13760.2775.1 vs. uniprot
Match: A0A7S1U7N5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7N5_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.980e-6
Identity = 32/60 (53.33%), Postives = 46/60 (76.67%), Query Frame = 1
Query:    1 QEDQILCEAQRQLGNKWSEMSKILVGRSENAIKNRFNSLNAKGLAETRANELMSK--LAP 174
            +ED IL +AQ +LGNKWSE+S++L GR+ENA+KNRFNS+  K L++  ++   S+  LAP
Sbjct:   34 EEDTILMDAQHRLGNKWSEISRLLPGRAENAVKNRFNSIITKRLSKGESDAYASRAELAP 93          
BLAST of mRNA_E-fasciculatus_F_contig13760.2775.1 vs. uniprot
Match: D8LKP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP8_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 5.240e-6
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 1
Query:    4 EDQILCEAQRQLGNKWSEMSKILVGRSENAIKNRFNSLNAKGLA 135
            ED  LCEAQ +LGNKWSE+SK+L GR+ENA+KNRFNS+  K LA
Sbjct:  191 EDMKLCEAQGRLGNKWSEISKLLPGRAENAVKNRFNSIITKRLA 234          
BLAST of mRNA_E-fasciculatus_F_contig13760.2775.1 vs. uniprot
Match: A0A6H5KU69_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU69_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 8.820e-6
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 1
Query:    4 EDQILCEAQRQLGNKWSEMSKILVGRSENAIKNRFNSLNAKGLA 135
            ED  LCEAQ +LGNKWSE+SK+L GR+ENA+KNRFNS+  K LA
Sbjct:   67 EDVKLCEAQGRLGNKWSEISKLLPGRAENAVKNRFNSIITKRLA 110          
BLAST of mRNA_E-fasciculatus_F_contig13760.2775.1 vs. uniprot
Match: F0YHL4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHL4_AURAN)

HSP 1 Score: 56.6 bits (135), Expect = 9.760e-6
Identity = 27/43 (62.79%), Postives = 37/43 (86.05%), Query Frame = 1
Query:    4 EDQILCEAQRQLGNKWSEMSKILVGRSENAIKNRFNSLNAKGL 132
            ED +L EAQ+++GNKWSE++++L GR+ENA+KNRFNSL  K L
Sbjct:  117 EDAVLLEAQQRVGNKWSEIARLLPGRAENAVKNRFNSLITKRL 159          
BLAST of mRNA_E-fasciculatus_F_contig13760.2775.1 vs. uniprot
Match: A0A0K9PQS0_ZOSMR (Uncharacterized protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9PQS0_ZOSMR)

HSP 1 Score: 58.5 bits (140), Expect = 1.860e-5
Identity = 27/47 (57.45%), Postives = 38/47 (80.85%), Query Frame = 1
Query:    1 QEDQILCEAQRQLGNKWSEMSKILVGRSENAIKNRFNSLNAKGLAET 141
            +ED +LCEAQR  GNKW+E+SK++ GR++NA+KNRFN+L+ K    T
Sbjct:   73 EEDALLCEAQRIYGNKWTEISKVVSGRTDNAVKNRFNTLSKKRTKHT 119          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13760.2775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5KBP4_9PHAE1.870e-15069.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ02_ECTSI8.210e-3636.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2FCN6_9STRA1.580e-662.22Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
W7TQR3_9STRA4.090e-673.68Myb-related protein a n=1 Tax=Nannochloropsis gadi... [more]
K8YTL3_NANGC4.250e-673.68V-myb myeloblastosis viral oncogene-like protein n... [more]
A0A7S1U7N5_9STRA4.980e-653.33Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
D8LKP8_ECTSI5.240e-670.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KU69_9PHAE8.820e-670.45MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
F0YHL4_AURAN9.760e-662.79Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A0K9PQS0_ZOSMR1.860e-557.45Uncharacterized protein n=1 Tax=Zostera marina Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13760contigE-fasciculatus_F_contig13760:112..2933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue1.9e-20
Seed eggNOG ortholog2880.D7FZ02
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons3
Model size2061
Cds size1143
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13760.2775.1prot_E-fasciculatus_F_contig13760.2775.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13760 1063..2641 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927869.207281-UTR-E-fasciculatus_F_contig13760:111..4421622927869.207281-UTR-E-fasciculatus_F_contig13760:111..442Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13760 112..442 -
1695995731.2440286-UTR-E-fasciculatus_F_contig13760:111..4421695995731.2440286-UTR-E-fasciculatus_F_contig13760:111..442Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13760 112..442 -
1622927869.2349267-UTR-E-fasciculatus_F_contig13760:767..10621622927869.2349267-UTR-E-fasciculatus_F_contig13760:767..1062Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13760 768..1062 -
1695995731.2551653-UTR-E-fasciculatus_F_contig13760:767..10621695995731.2551653-UTR-E-fasciculatus_F_contig13760:767..1062Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13760 768..1062 -
1622927869.286022-UTR-E-fasciculatus_F_contig13760:2641..29331622927869.286022-UTR-E-fasciculatus_F_contig13760:2641..2933Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13760 2642..2933 -
1695995731.292016-UTR-E-fasciculatus_F_contig13760:2641..29331695995731.292016-UTR-E-fasciculatus_F_contig13760:2641..2933Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13760 2642..2933 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927869.254074-CDS-E-fasciculatus_F_contig13760:1062..14951622927869.254074-CDS-E-fasciculatus_F_contig13760:1062..1495Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13760 1063..1495 -
1695995731.2639794-CDS-E-fasciculatus_F_contig13760:1062..14951695995731.2639794-CDS-E-fasciculatus_F_contig13760:1062..1495Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13760 1063..1495 -
1622927869.269408-CDS-E-fasciculatus_F_contig13760:1931..26411622927869.269408-CDS-E-fasciculatus_F_contig13760:1931..2641Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13760 1932..2641 -
1695995731.2788115-CDS-E-fasciculatus_F_contig13760:1931..26411695995731.2788115-CDS-E-fasciculatus_F_contig13760:1931..2641Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13760 1932..2641 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13760.2775.1

>prot_E-fasciculatus_F_contig13760.2775.1 ID=prot_E-fasciculatus_F_contig13760.2775.1|Name=mRNA_E-fasciculatus_F_contig13760.2775.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=381bp
MWVRRRLAAAAAAAAAAAAAAAAEARIVAARLRAAMSTEPAGEVRLAAAG
RVRTRRAAATAAATTTTTAVVVVTATVATVERATVAAAAAAATWTRGATA
PARAATPRQRWASGRPLGEARATTMLPPPLAEAMPESAAPRQWRRSWSPL
GARGPPVEALATRATTVVARGATAITGAGRRRGRAGSEGGPRRRERGRRG
GDGRRPREEVAAPPPPSQSRGGKRRRGLRGGRLVGKRTWRGRRRECLSWP
RRPACSTSRTRSKQRMATAIATAAAAAAATLDGMVPMPTACSPLVWSIAE
ATSAVAAATPASTTADSKLTATTAPPPLSTTGPPRPEAPARPPAAPRQGV
GDRQPVEPPPLAEPAAAAAVARPGRLTRSR*
back to top

mRNA from alignment at E-fasciculatus_F_contig13760:112..2933-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13760.2775.1 ID=mRNA_E-fasciculatus_F_contig13760.2775.1|Name=mRNA_E-fasciculatus_F_contig13760.2775.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2822bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13760:112..2933- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGAGGACCAGATCCTGTGCGAGGCTCAGAGGCAGCTCGGCAACAAGTG GAGCGAGATGTCCAAGATACTGGTGGGCCGCTCGGAGAATGCCATCAAGA ACAGGTTCAACTCCCTCAACGCCAAGGGCCTGGCCGAGACGCGCGCGAAC GAGCTCATGTCCAAGCTCGCCCCGGAGGAGAAGGCGGCGCTCCTGAACAT CGATTCCGATCCGCCGGCCCCCCCGCGCCTGTCTTCTTCTTCTTCTTCTT CTTCGACCGCCAACAAGAAGAAGGCCGGGGCCAACAGCACCCATGTGGGT AAGGAGAAGGTTAGCAGCAGCAGCAGCAGCAGCAGCGGCGGCGGCGGCGG CGGCGGCAGCGGAAGCAAGAATAGTGGCAGCAAGGTTAAGGGCGGCGATG TCGACGGAGCCGGCGGGAGAAGTAAGGCTGGCAGCGGCAGGAAGGGTGCG AACAAGAAGAGCAGCAGCAACAGCAGCAGCAACAACAACAACAACAGCAG TAGTAGTAGTGACAGCAACGGTAGCGACGGTAGAAAGAGCAACGGTAGCA GCAGCAGCAGCAGCAGCAACGTGGACGAGAGGGGCGACGGCACCCGCGAG GGCAGCAACGCCTCGTCAGCGTTGGGCTTCGGGACGGCCGCTGGGGGAAG CAAGAGCGACGACGATGCTGCCGCCGCCGCTAGCGGAGGCGATGCCGGAG TCGGCCGCTCCGCGGCAATGGAGGCGCTCATGGTCGCCGCTCGGGGCGAG AGGACCGCCTGTGGAGGCACTGGCGACGAGGGCAACGACGGTGGTAGCTC GTGGAGCAACAGCAATAACCGGGGCGGGGCGGAGGCGGGGGCGCGCTGGA AGCGAGGGTGGGCCCCGGCGGCGGGAGCGGGGGCGGAGAGGCGGGGACGG CAGGAGACCGCGGGAGGAGGTGGCGGCGCCACCGCCGCCGTCGCAGAGCC GGGGAGGAAAGCGGCGAAGAGGCCTAAGGGGGGGCAGGCTCGTCGGAAAA CGGTGAGCGAGAGTGTCGAAAACGCTTTTTTTTTTCGTGTGTGTGAGTCG CTGGGAATCCGTGAAACTGCTGTGAATCCGTGAAACTGCTGTGAATCCGT GATACTGCTGTGAAGCCGTGATACTGCTGTGAAGCCGTGATACTGCTGTG AAGCCGTGATACTGCTGGGAAGCCGTGATACTGCTGGGAAGCCGTGAAAC TGCTGTGAAGCCGTGAGGCTTGGGCTGTCGGCGTTGTTTGTTTCGACCGG TCCTGCTAGCGTATTTGTGGGATCGGTCCCTATTTTTTTTCTTGTGCCTG GAGGTCGGTCGATATCGCGGAACCTGTGCTGTTTTTTTGCCCCTCCGTTT GTTCCGCGTGCTCGATTTGTGACAAACGTACAACGTACCGTCGCACCGAA CCGCCTACTTATGGCACGACGCGTGTGGCGAACCGCAGGACATGGCGCGG GCGGAGGCGGGAATGTCTGTCCTGGCCCAGGCGGCCGGCCTGCTCGACAT CGAGGACTCGGTCGAAGCAGCGGATGGCAACAGCAATAGCAACGGCGGCG GCGGCGGCGGCGGCGACGCTGGACGGAATGGTCCCGATGCCCACGGCATG CTCGCCACTGGTATGGTCGATTGCCGAAGCAACTTCGGCGGTGGCGGCAG CTACGCCAGCCAGTACTACGGCCGACTCCAAACTAACGGCCACAACGGCT CCTCCGCCTTTATCGACCACGGGTCCACCCCGCCCGGAAGCGCCAGCCCG CCCCCCAGCGGCCCCGCGTCAGGGGGTGGGGGATCGGCAGCCGGTGGAGC CTCCCCCTTTGGCGGAGCCGGCGGCGGCTGCGGCGGTCGCACGGCCGGGA CGGCTGACGCGTTCCCGGTAGGCGCCCGGGGGGTGAGCAGCGTCGGTGGT GCGAGAATCATCGGGCGGAACTCGGAGTACTACCACGTGGGAGGTGAGAG CTCGTACGGGGGAGAGAGCGGCGGCGGGGAGAGGGCATCGTGGGGCGGGC TCCCGTCGTCTTCGTCGTCGCAGCGGTGGAGCTTGCACTCCGTGCCCGGC CCGTGGAGGCCATACTGGACGGGGCAAGACGGCGGCAACGGCGGCGGTGG CGGCGGTGGTGGTGGTGGTGCTGCTGCTGCCAGGTGGCCACGGCAGGATG AAGGCCCGGACAACGGGTGAGTGTTGGGTGTCCGTCAAGGTCAAAATCAA GGACCACACGATGGGGGGAAAACGTAGAAGGAGAGAGAGTGCTCAGATTG TGGGAACCCGTCTGCCTGCCAGCCGGCAACACGCCGGTTGCCACAAAAAC AAACGAAACAAACGCCTCCTCCGTGAATCCCTGGCTGCGAGTAAAGCTTA AGCTTAGCTGCGATTCCACCTACACACGTATGCGTACCTAAACTTACGTT TTTGCTATTGCGCTCTCTCTTTCCTGCTCCTGCTCTTTTCGTGTGTGCCT GCAACTGGGCCGATGACGCCGTGTTCCGTAACCTAACCTAGTTTCAGGAG TTAGGGCAGACAGCGGCAGAGCTTGGCGTAGCAACGCCCATGGCCTTCGT TCGGAGGGCGGGTAGGCGGCGGTGGCTGGCTGTTCGGCGGTCCTGACCCG GACTTGTCGACCGGGGGCCCCAAAATCATCGGCCCGTGCGAGGGGAAGGG TGGCGTCTAGCTGCTGCTGTTGCTGAGCCGCCGCCGCCGCCGCTGACCAC GCGGCCCTGCGTATAGAAAGAGCGCGCAATGTAGATGCTGCCTGACACCT GACGACCAAAGGTAGGGGTAGAGGGGGGCGTTGATGACGAGGGAGGCATC TATGAAATCGCCCGGCGAAAGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13760:112..2933-

>mRNA_E-fasciculatus_F_contig13760.2775.1 ID=mRNA_E-fasciculatus_F_contig13760.2775.1|Name=mRNA_E-fasciculatus_F_contig13760.2775.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2286bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13760:112..2933- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGGGTAAGGAGAAGGTTAGCAGCAGCAGCAGCAGCAGCAGCGGCGGC
GGCGGCGGCGGCGGCAGCGGAAGCAAGAATAGTGGCAGCAAGGTTAAGGG
CGGCGATGTCGACGGAGCCGGCGGGAGAAGTAAGGCTGGCAGCGGCAGGA
AGGGTGCGAACAAGAAGAGCAGCAGCAACAGCAGCAGCAACAACAACAAC
AACAGCAGTAGTAGTAGTGACAGCAACGGTAGCGACGGTAGAAAGAGCAA
CGGTAGCAGCAGCAGCAGCAGCAGCAACGTGGACGAGAGGGGCGACGGCA
CCCGCGAGGGCAGCAACGCCTCGTCAGCGTTGGGCTTCGGGACGGCCGCT
GGGGGAAGCAAGAGCGACGACGATGCTGCCGCCGCCGCTAGCGGAGGCGA
TGCCGGAGTCGGCCGCTCCGCGGCAATGGAGGCGCTCATGGTCGCCGCTC
GGGGCGAGAGGACCGCCTGTGGAGGCACTGGCGACGAGGGCAACGACGGT
GGTAGCTCGTGGAGCAACAGCAATAACCGGGGCGGGGCGGAGGCGGGGGC
GCGCTGGAAGCGAGGGTGGGCCCCGGCGGCGGGAGCGGGGGCGGAGAGGC
GGGGACGGCAGGAGACCGCGGGAGGAGGTGGCGGCGCCACCGCCGCCGTC
GCAGAGCCGGGGAGGAAAGCGGCGAAGAGGCCTAAGGGGGGGCAGGCTCG
TCGGAAAACGATGTGGGTAAGGAGAAGGTTAGCAGCAGCAGCAGCAGCAG
CAGCGGCGGCGGCGGCGGCGGCGGCAGCGGAAGCAAGAATAGTGGCAGCA
AGGTTAAGGGCGGCGATGTCGACGGAGCCGGCGGGAGAAGTAAGGCTGGC
AGCGGCAGGAAGGGTGCGAACAAGAAGAGCAGCAGCAACAGCAGCAGCAA
CAACAACAACAACAGCAGTAGTAGTAGTGACAGCAACGGTAGCGACGGTA
GAAAGAGCAACGGTAGCAGCAGCAGCAGCAGCAGCAACGTGGACGAGAGG
GGCGACGGCACCCGCGAGGGCAGCAACGCCTCGTCAGCGTTGGGCTTCGG
GACGGCCGCTGGGGGAAGCAAGAGCGACGACGATGCTGCCGCCGCCGCTA
GCGGAGGCGATGCCGGAGTCGGCCGCTCCGCGGCAATGGAGGCGCTCATG
GTCGCCGCTCGGGGCGAGAGGACCGCCTGTGGAGGCACTGGCGACGAGGG
CAACGACGGTGGTAGCTCGTGGAGCAACAGCAATAACCGGGGCGGGGCGG
AGGCGGGGGCGCGCTGGAAGCGAGGGTGGGCCCCGGCGGCGGGAGCGGGG
GCGGAGAGGCGGGGACGGCAGGAGACCGCGGGAGGAGGTGGCGGCGCCAC
CGCCGCCGTCGCAGAGCCGGGGAGGAAAGCGGCGAAGAGGCCTAAGGGGG
GGCAGGCTCGTCGGAAAACGGACATGGCGCGGGCGGAGGCGGGAATGTCT
GTCCTGGCCCAGGCGGCCGGCCTGCTCGACATCGAGGACTCGGTCGAAGC
AGCGGATGGCAACAGCAATAGCAACGGCGGCGGCGGCGGCGGCGGCGACG
CTGGACGGAATGGTCCCGATGCCCACGGCATGCTCGCCACTGGTATGGTC
GATTGCCGAAGCAACTTCGGCGGTGGCGGCAGCTACGCCAGCCAGTACTA
CGGCCGACTCCAAACTAACGGCCACAACGGCTCCTCCGCCTTTATCGACC
ACGGGTCCACCCCGCCCGGAAGCGCCAGCCCGCCCCCCAGCGGCCCCGCG
TCAGGGGGTGGGGGATCGGCAGCCGGTGGAGCCTCCCCCTTTGGCGGAGC
CGGCGGCGGCTGCGGCGGTCGCACGGCCGGGACGGCTGACGCGTTCCCGG
TAGGACATGGCGCGGGCGGAGGCGGGAATGTCTGTCCTGGCCCAGGCGGC
CGGCCTGCTCGACATCGAGGACTCGGTCGAAGCAGCGGATGGCAACAGCA
ATAGCAACGGCGGCGGCGGCGGCGGCGGCGACGCTGGACGGAATGGTCCC
GATGCCCACGGCATGCTCGCCACTGGTATGGTCGATTGCCGAAGCAACTT
CGGCGGTGGCGGCAGCTACGCCAGCCAGTACTACGGCCGACTCCAAACTA
ACGGCCACAACGGCTCCTCCGCCTTTATCGACCACGGGTCCACCCCGCCC
GGAAGCGCCAGCCCGCCCCCCAGCGGCCCCGCGTCAGGGGGTGGGGGATC
GGCAGCCGGTGGAGCCTCCCCCTTTGGCGGAGCCGGCGGCGGCTGCGGCG
GTCGCACGGCCGGGACGGCTGACGCGTTCCCGGTAG
back to top