mRNA_E-fasciculatus_F_contig13385.2534.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13385.2534.1
Unique NamemRNA_E-fasciculatus_F_contig13385.2534.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13385.2534.1 vs. uniprot
Match: A0A6H5KJE7_9PHAE (DENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJE7_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 3.670e-30
Identity = 73/75 (97.33%), Postives = 73/75 (97.33%), Query Frame = 1 
Query:    1 RGGSDRSGGPGSSXXXXXXGTDGFRGGARSPGLPSPNTLLLRSLSSSSAISRVSSHFSHFNSNATPVELQLPATF 225
            RGGSDRSGGPGSSXXXXXX TDGFRGGARSPGLPSPNTLLLRSLSSSSAISRVSSHFSHFNSN TPVELQLPATF
Sbjct:  574 RGGSDRSGGPGSSXXXXXXXTDGFRGGARSPGLPSPNTLLLRSLSSSSAISRVSSHFSHFNSNVTPVELQLPATF 648
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BLAST of mRNA_E-fasciculatus_F_contig13385.2534.1 vs. uniprot
Match: D7FYV2_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV2_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 3.670e-30
Identity = 73/75 (97.33%), Postives = 73/75 (97.33%), Query Frame = 1 
Query:    1 RGGSDRSGGPGSSXXXXXXGTDGFRGGARSPGLPSPNTLLLRSLSSSSAISRVSSHFSHFNSNATPVELQLPATF 225
            RGGSDRSGGPGSSXXXXXX TDGFRGGARSPGLPSPNTLLLRSLSSSSAISRVSSHFSHFNSN TPVELQLPATF
Sbjct:  946 RGGSDRSGGPGSSXXXXXXXTDGFRGGARSPGLPSPNTLLLRSLSSSSAISRVSSHFSHFNSNVTPVELQLPATF 1020
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13385.2534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJE7_9PHAE3.670e-3097.33DENN domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FYV2_ECTSI3.670e-3097.33PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13385contigE-fasciculatus_F_contig13385:638..862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927838.926742-CDS-E-fasciculatus_F_contig13385:637..8621622927838.926742-CDS-E-fasciculatus_F_contig13385:637..862Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13385 638..862 +
1695995717.331708-CDS-E-fasciculatus_F_contig13385:637..8621695995717.331708-CDS-E-fasciculatus_F_contig13385:637..862Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13385 638..862 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13385.2534.1prot_E-fasciculatus_F_contig13385.2534.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13385 638..862 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13385.2534.1

>prot_E-fasciculatus_F_contig13385.2534.1 ID=prot_E-fasciculatus_F_contig13385.2534.1|Name=mRNA_E-fasciculatus_F_contig13385.2534.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=75bp
RGGSDRSGGPGSSGGHGRGGTDGFRGGARSPGLPSPNTLLLRSLSSSSAI
SRVSSHFSHFNSNATPVELQLPATF
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mRNA from alignment at E-fasciculatus_F_contig13385:638..862+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13385.2534.1 ID=mRNA_E-fasciculatus_F_contig13385.2534.1|Name=mRNA_E-fasciculatus_F_contig13385.2534.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=225bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13385:638..862+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCGGAGGGAGCGACAGGTCTGGGGGCCCTGGGAGCAGTGGGGGGCACGG
CCGTGGGGGCACGGACGGCTTCCGCGGTGGCGCTAGAAGCCCCGGCCTCC
CGAGCCCCAACACGCTGTTGCTCCGGAGCTTGAGCTCGTCGTCGGCCATC
TCGCGGGTTTCCTCTCACTTCTCCCACTTCAACTCCAACGCCACTCCCGT
GGAGCTGCAGCTGCCGGCCACCTTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13385:638..862+

>mRNA_E-fasciculatus_F_contig13385.2534.1 ID=mRNA_E-fasciculatus_F_contig13385.2534.1|Name=mRNA_E-fasciculatus_F_contig13385.2534.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=450bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13385:638..862+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCGGAGGGAGCGACAGGTCTGGGGGCCCTGGGAGCAGTGGGGGGCACGG
CCGTGGGGGCACGGACGGCTTCCGCGGTGGCGCTAGAAGCCCCGGCCTCC
CGAGCCCCAACACGCTGTTGCTCCGGAGCTTGAGCTCGTCGTCGGCCATC
TCGCGGGTTTCCTCTCACTTCTCCCACTTCAACTCCAACGCCACTCCCGT
GGAGCTGCAGCTGCCGGCCACCTTCCGCGGAGGGAGCGACAGGTCTGGGG
GCCCTGGGAGCAGTGGGGGGCACGGCCGTGGGGGCACGGACGGCTTCCGC
GGTGGCGCTAGAAGCCCCGGCCTCCCGAGCCCCAACACGCTGTTGCTCCG
GAGCTTGAGCTCGTCGTCGGCCATCTCGCGGGTTTCCTCTCACTTCTCCC
ACTTCAACTCCAACGCCACTCCCGTGGAGCTGCAGCTGCCGGCCACCTTC
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