mRNA_E-fasciculatus_F_contig13316.2489.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13316.2489.1
Unique NamemRNA_E-fasciculatus_F_contig13316.2489.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13316.2489.1 vs. uniprot
Match: D8LJM7_ECTSI (C3H1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJM7_ECTSI)

HSP 1 Score: 306 bits (783), Expect = 7.310e-101
Identity = 153/168 (91.07%), Postives = 159/168 (94.64%), Query Frame = 1 
Query:    1 MWSTTDGSTWTQVTSVQMTEWRHVGALQEVEGALYVGYGTPYAHLADVTVDALRVMDLTSGSTQEVVSAVTGFAHSARINRVMVVKVGAESRVYSGDEEGRIAAWARPSPGAPFAQLAQLEGHARAITSLVSTASNGMLWSSSEDGTIRIWNTGTNACEHTITSEREG 504
            MWSTTDGSTWTQVTSVQMTEWRHVG LQEVEG LYVGYGTPYAHLADVTVDALRVMDLTSGSTQEVVS+VTGFAH++RINR+MV KVGAE RVY+GDEEGRI AWARPSPGAPFAQLAQLEGHARAITSLVSTASNGMLWSSSEDGTIRIWNTGTNAC HTIT +  G
Sbjct:  132 MWSTTDGSTWTQVTSVQMTEWRHVGDLQEVEGVLYVGYGTPYAHLADVTVDALRVMDLTSGSTQEVVSSVTGFAHASRINRIMVAKVGAEPRVYTGDEEGRITAWARPSPGAPFAQLAQLEGHARAITSLVSTASNGMLWSSSEDGTIRIWNTGTNACVHTITKDNGG 299
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BLAST of mRNA_E-fasciculatus_F_contig13316.2489.1 vs. uniprot
Match: A0A7S0CBB5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CBB5_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.970e-8
Identity = 41/110 (37.27%), Postives = 56/110 (50.91%), Query Frame = 1 
Query:  217 FAHSARINRVMVVKVGAESRVYSGDEEGRIAAW---------------ARPSPGAPFAQLAQLEGHARAITSLVSTASNGMLWSSSEDGTIRIWNTGTNACEHTITSERE 501
            +AH+  ++ ++V K   +  V SG ++G I  W               A  SP + F  L  L GHAR IT LV   +  M+WSSS D TIR+W+  T  C+H ITS  E
Sbjct:    1 YAHAMGVSSLLVTK---DMVVVSGSKDGTIRIWKFTTTNPAVATPGAVAPASPASEFLLLNTLFGHAREITGLV-LINMSMIWSSSTDYTIRLWDANTGQCQHLITSAEE 106
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BLAST of mRNA_E-fasciculatus_F_contig13316.2489.1 vs. uniprot
Match: A0A6U5LIP5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5LIP5_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.040e-7
Identity = 49/151 (32.45%), Postives = 70/151 (46.36%), Query Frame = 1 
Query:   70 VGALQEVEGALYVGYGTPYAHLADVTVDALRVMDLTSGST--QEVV---SAVTGFAHSARINRVMVVKVGAES-RVYSGDEEGRIAAWARPSPGAPFAQLAQLEGHARAITSLVSTASNGMLWSSSEDGTIRIWNTGTNACEHTITSEREG 504
            VGAL      L+ G+      L  V V ++   +L + ++  QE     SAV  +AH   +  ++ V  GA    V S  E+G I  W   +    F     L GHARA++ L    S G+LWS SED +IR+W+    +C   I    EG
Sbjct:  163 VGALVVSNNLLFCGFEKECPLLPGVKVGSIHAWNLQNAASPPQEFHAEDSAVHPYAHGRIVTSLLPVPDGAGGVAVVSSSEDGLIRVWRFDTGTGKFMVFRSLMGHARAVSGLAY--SEGLLWSGSEDHSIRMWDMSKGSCGKVIAGGSEG 311
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BLAST of mRNA_E-fasciculatus_F_contig13316.2489.1 vs. uniprot
Match: A0A7R9WQC1_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WQC1_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 5.420e-5
Identity = 34/96 (35.42%), Postives = 52/96 (54.17%), Query Frame = 1 
Query:  217 FAHSARINRVMVVKVGAESRVYSGDEEGRIAAW---ARPSPG-APFAQLAQLEGHARAITSLVSTASNGMLWSSSEDGTIRIWNTGTNACEHTITS 492
            ++H+ R++ + V+      +V SG  +G I  W   A  + G   F     L GHAR +T L    +  +LWSSS DG+IRIW+  +  C+H IT+
Sbjct:   20 YSHATRVSALNVI---GGQKVISGSRDGCIRLWTFEASSNQGKGGFVLSKTLAGHAREVTGLA--VAENVLWSSSIDGSIRIWDLASGNCQHAITN 110
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13316.2489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LJM7_ECTSI7.310e-10191.07C3H1-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S0CBB5_9STRA1.970e-837.27Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A6U5LIP5_9STRA3.040e-732.45Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7R9WQC1_9STRA5.420e-535.42Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13316contigE-fasciculatus_F_contig13316:226..2989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score306.6
Seed ortholog evalue7.1e-81
Seed eggNOG ortholog2880.D8LJM7
KEGG koko:K10267,ko:K10646
EggNOG free text desc.SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
EggNOG OGsKOG0274@1,KOG0274@2759
EC2.3.2.27
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons5
Model size504
Cds size504
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13316.2489.1prot_E-fasciculatus_F_contig13316.2489.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13316 226..2989 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927833.9158018-CDS-E-fasciculatus_F_contig13316:225..3121622927833.9158018-CDS-E-fasciculatus_F_contig13316:225..312Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13316 226..312 +
1695995714.909894-CDS-E-fasciculatus_F_contig13316:225..3121695995714.909894-CDS-E-fasciculatus_F_contig13316:225..312Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13316 226..312 +
1622927833.932596-CDS-E-fasciculatus_F_contig13316:571..6451622927833.932596-CDS-E-fasciculatus_F_contig13316:571..645Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13316 572..645 +
1695995714.926917-CDS-E-fasciculatus_F_contig13316:571..6451695995714.926917-CDS-E-fasciculatus_F_contig13316:571..645Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13316 572..645 +
1622927833.9460907-CDS-E-fasciculatus_F_contig13316:1224..12931622927833.9460907-CDS-E-fasciculatus_F_contig13316:1224..1293Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13316 1225..1293 +
1695995714.9355125-CDS-E-fasciculatus_F_contig13316:1224..12931695995714.9355125-CDS-E-fasciculatus_F_contig13316:1224..1293Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13316 1225..1293 +
1622927833.9621542-CDS-E-fasciculatus_F_contig13316:2102..22051622927833.9621542-CDS-E-fasciculatus_F_contig13316:2102..2205Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13316 2103..2205 +
1695995714.9434106-CDS-E-fasciculatus_F_contig13316:2102..22051695995714.9434106-CDS-E-fasciculatus_F_contig13316:2102..2205Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13316 2103..2205 +
1622927833.9752963-CDS-E-fasciculatus_F_contig13316:2818..29891622927833.9752963-CDS-E-fasciculatus_F_contig13316:2818..2989Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13316 2819..2989 +
1695995714.9549556-CDS-E-fasciculatus_F_contig13316:2818..29891695995714.9549556-CDS-E-fasciculatus_F_contig13316:2818..2989Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13316 2819..2989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13316.2489.1

>prot_E-fasciculatus_F_contig13316.2489.1 ID=prot_E-fasciculatus_F_contig13316.2489.1|Name=mRNA_E-fasciculatus_F_contig13316.2489.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=168bp
MWSTTDGSTWTQVTSVQMTEWRHVGALQEVEGALYVGYGTPYAHLADVTV
DALRVMDLTSGSTQEVVSAVTGFAHSARINRVMVVKVGAESRVYSGDEEG
RIAAWARPSPGAPFAQLAQLEGHARAITSLVSTASNGMLWSSSEDGTIRI
WNTGTNACEHTITSEREG
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mRNA from alignment at E-fasciculatus_F_contig13316:226..2989+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13316.2489.1 ID=mRNA_E-fasciculatus_F_contig13316.2489.1|Name=mRNA_E-fasciculatus_F_contig13316.2489.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2764bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13316:226..2989+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGGTCGACGACGGACGGGTCTACGTGGACTCAGGTGACGTCGGTCCA
GATGACCGAGTGGAGACATGTGGGCGCTCTCCAGGAGGTTAGTCGGGGAG
GTTCGACTGCTGCAGTCGCGGGGCCCTTTCGGAGGAGTGAAATCTCGGGG
GGCACTCACTGAAATGTCACGTTGTTTATTGGAGGAGTGAAGTCTCTCGG
CACACAATGAACCAGTCAAGTTGTTTACTGGGGGAGTGAAAATTACATTG
TATAGGTTTTGGTTTAGGAGTGGACGCTCGTGCCCACGGCGCTACCCGGC
ACTAAACAGGGACCTCTCTCTACTGTTCGCCGCGCTTGTTTGTCAGGTTG
AAGGCGCGCTTTATGTCGGTTACGGCACGCCGTATGCCCACTTGGCGGAT
GTGACTGTGGACGCCTTGAGGTCAGAAAGACGGGATTAGGCTTGGGGTGG
CGTTCTCTCTCTCTCTCGCTCGCGCGTGGTCTGTTGTTCTTCCTGGTCTG
TGGTGGCATTTTTGGTACCGTTGGGCTTGGGCGTTATCGGCGATGTTGGT
GGCGTTTTTTTGTGTTTTATCGGGTCGTGGTGTGTGATGCGGCTGACTCT
TTCGTTTTTGCTGAAAAGCAGTAGTGTAGTCGATGACAAGATGACCCGGT
CGGTCTTGCCTCGATGGGGTGCAACGCAAGAAGGCACTGCTCACATTAAC
ACGACTTCCGCACCCCTACGACTCCTCTACCAGCGCGCGGCCGACGAAGG
TATCACGATCGATAGGATAGGGCTAGTAAACCCCATGTGCTCCGAGTTGT
AGTTGTTGGCGTGGGCATGCCGGTAAACCTCATGTGCCCCAAGTTGTTGT
TTCGGCTTGGGTTTCTTTCTCCGTCTGATATGTTCATCATCTCATCCTCC
CCCCGGCCTCCCACTCCTCCTGCCGCTGCCGCTGCCGGTGTTTTGTCTGT
CTCTCGTCTTTCGTGTGCTCTTGCTGTCCCCCGTTGACGGACCATGAAGA
GTAATGGATCTCACCAGCGGAAGCACGCAGGAGGTCGTCAGCGCCGTCAC
CGGCTTCGCCCACTCTGCGTGAGTGCTCCCAGTCGAACTCTGAAGCATTG
CTTCTTGTGCGAACCTTTTAGTTGCCTTAGGTAGTGTGTGGGGCACCACG
ATGCTAGTCCGGATGACTGGAGGTATCTACTGTAACTACCCGGGCGTTAG
ACGCCCCATGTCTGCGCGTTTGTGCCGGCTCCCATGGAGGAGCACGTGAC
TTGTTGCGGAATGATCACATGTGGCGTCGCGTCACGTCAGGTGAAAAGAG
GGAGTCGTCCTGGTCTGGCAGGCGTTGGTGAGATTGTATGCATACCGTTA
ATGAAGGGGATCGATTCTTCACAGTCACCGCCTTTGCTTTTGCGAAGAAC
AGGTATGGTATGGTTTGGTAAATCGATCACCTTCATCGCCGCATTTCGTC
CTTCTGTCCTTCTGTCCTGGTGTTTACACACACATCCCTTCGGGGGTAAA
GCCTCATCCTCATCCCTACTTCTCTCTGTTCTCGCACCATGTCCCTCCCT
TGAATTCTCACGAGACAGCACCGTGTTTGTTTGTTTTCTCCTACTCGAGT
TAAACAAATTGCTCTCCTTCCCCAGCTAAATGCTCGAGGATAATTAGCAA
CGATTTCATACCTTTGTTTGACTCCTCTGTGCTTCTACTGCTGTTCGTTT
GTTTTTTTGTTCATTGAAATTCGCCTCTTGTCTGACAACGGAAGGAAGCT
CCTTCCCAGAAGAAATGCTGTGAGATGTGAGTGCTGATTTAAAGCGATGG
TTTTGAAGAAGAAAAAAAAACAATCGTGTGTTTGTGTCCTTTTGTGCGAC
GACCCAACGCCTGACGGGCCGGGCCAGGCGTATAAACCGCGTCATGGTGG
TGAAGGTCGGGGCGGAGTCTAGGGTGTACAGCGGGGACGAGGAGGGACGA
ATAGCCGCGTGGGCACGACCAAGCCCAGGGGTGAGTCAAGTCGAGCTGTC
GTATCATACTTCGTTTTTTTCGATCGCCTTTGATTGCCTCGTGCATTCTC
TCTGACTCTAGTCGTTACTTGATGCGAGGTGTGCGGCCCACATTTACGGA
AGAGTGGTGGGTTTGATAAGACGATAAGACTAGAACTTGAAGTATGTTAG
CGCGAGGGGTTGGAGCTGAACACTGGTTTCCAATCGTCGATTCGGTGAAA
AATTGTGTTTTCTCGTGTACTTGGCGTTGTTGGTCGACTCGGAGTGATGG
CACCGGCGACAAGGGTGAGTGATGGCACTAGAGCAGCAGCCGCTCGGACT
CAACCAACCCTCATGGGCATAGAGGGGTCGTTTGGTTTATATATATTTTT
CTTGCGTATTTTTTTTCTCGACAGACCATGCACCACCCGTTTTCGTTGCT
TGCCCTAAAGATAATACTCATGCCATGCTGCTGTTCGACAAGGACTACAA
TATCTAGCCTTGAGCTTTTCTGTTTTATTTTGGTAGGGGGGGGCAGTGCA
AGTTTTTTTTTAATGTTTTTTTTGCGCGGCACGCACCACAACACACGTAT
TGCTCCCTCTGTCGTTCTGTGCTGACTTGGACTTGTCACCCAGGCACCCT
TCGCCCAGCTGGCCCAGCTCGAAGGGCACGCGAGAGCGATCACTTCCCTG
GTGTCGACGGCCAGCAACGGCATGCTGTGGTCATCCTCGGAGGACGGCAC
GATCAGGATTTGGAACACGGGCACTAACGCCTGCGAGCACACCATCACAA
GTGAGAGAGAGGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13316:226..2989+

>mRNA_E-fasciculatus_F_contig13316.2489.1 ID=mRNA_E-fasciculatus_F_contig13316.2489.1|Name=mRNA_E-fasciculatus_F_contig13316.2489.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1008bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13316:226..2989+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGGTCGACGACGGACGGGTCTACGTGGACTCAGGTGACGTCGGTCCA
GATGACCGAGTGGAGACATGTGGGCGCTCTCCAGGAGATGTGGTCGACGA
CGGACGGGTCTACGTGGACTCAGGTGACGTCGGTCCAGATGACCGAGTGG
AGACATGTGGGCGCTCTCCAGGAGGTTGAAGGCGCGCTTTATGTCGGTTA
CGGCACGCCGTATGCCCACTTGGCGGATGTGACTGTGGACGCCTTGAGGT
TGAAGGCGCGCTTTATGTCGGTTACGGCACGCCGTATGCCCACTTGGCGG
ATGTGACTGTGGACGCCTTGAGAGTAATGGATCTCACCAGCGGAAGCACG
CAGGAGGTCGTCAGCGCCGTCACCGGCTTCGCCCACTCTGCAGTAATGGA
TCTCACCAGCGGAAGCACGCAGGAGGTCGTCAGCGCCGTCACCGGCTTCG
CCCACTCTGCGCGTATAAACCGCGTCATGGTGGTGAAGGTCGGGGCGGAG
TCTAGGGTGTACAGCGGGGACGAGGAGGGACGAATAGCCGCGTGGGCACG
ACCAAGCCCAGGGGCGTATAAACCGCGTCATGGTGGTGAAGGTCGGGGCG
GAGTCTAGGGTGTACAGCGGGGACGAGGAGGGACGAATAGCCGCGTGGGC
ACGACCAAGCCCAGGGGCACCCTTCGCCCAGCTGGCCCAGCTCGAAGGGC
ACGCGAGAGCGATCACTTCCCTGGTGTCGACGGCCAGCAACGGCATGCTG
TGGTCATCCTCGGAGGACGGCACGATCAGGATTTGGAACACGGGCACTAA
CGCCTGCGAGCACACCATCACAAGTGAGAGAGAGGGCGCACCCTTCGCCC
AGCTGGCCCAGCTCGAAGGGCACGCGAGAGCGATCACTTCCCTGGTGTCG
ACGGCCAGCAACGGCATGCTGTGGTCATCCTCGGAGGACGGCACGATCAG
GATTTGGAACACGGGCACTAACGCCTGCGAGCACACCATCACAAGTGAGA
GAGAGGGC
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