mRNA_E-fasciculatus_F_contig13147.2380.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13147.2380.1
Unique NamemRNA_E-fasciculatus_F_contig13147.2380.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13147.2380.1 vs. uniprot
Match: D8LR42_ECTSI (Ribosomal protein L3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR42_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.040e-20
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:   10 RGAAFPSDPPFPSFVATAEGDGDESSLQEIWCPQGEEDPLEIVYED 147
            +GAAFPSDPPFPSFVA AEGDGD+SSLQEIWCPQGEEDPLEIV ED
Sbjct:  324 KGAAFPSDPPFPSFVAVAEGDGDDSSLQEIWCPQGEEDPLEIVDED 369
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13147.2380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LR42_ECTSI1.040e-2091.30Ribosomal protein L3 n=2 Tax=Ectocarpus TaxID=2879... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13147contigE-fasciculatus_F_contig13147:266..415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue3.7e-17
Seed eggNOG ortholog2880.D8LR42
KEGG koko:K02906
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0087@1,KOG3141@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927819.1538942-CDS-E-fasciculatus_F_contig13147:265..4151622927819.1538942-CDS-E-fasciculatus_F_contig13147:265..415Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13147 266..415 +
1695995708.0760908-CDS-E-fasciculatus_F_contig13147:265..4151695995708.0760908-CDS-E-fasciculatus_F_contig13147:265..415Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13147 266..415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13147.2380.1prot_E-fasciculatus_F_contig13147.2380.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13147 266..415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13147.2380.1

>prot_E-fasciculatus_F_contig13147.2380.1 ID=prot_E-fasciculatus_F_contig13147.2380.1|Name=mRNA_E-fasciculatus_F_contig13147.2380.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=50bp
DDRRGAAFPSDPPFPSFVATAEGDGDESSLQEIWCPQGEEDPLEIVYED*
back to top

mRNA from alignment at E-fasciculatus_F_contig13147:266..415+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13147.2380.1 ID=mRNA_E-fasciculatus_F_contig13147.2380.1|Name=mRNA_E-fasciculatus_F_contig13147.2380.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=150bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13147:266..415+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACGACCGCAGGGGCGCTGCGTTCCCGTCGGACCCTCCTTTCCCTTCCTT
CGTGGCGACGGCGGAAGGAGACGGGGACGAGTCGTCCCTGCAGGAGATTT
GGTGCCCGCAGGGGGAGGAGGACCCGCTGGAGATTGTTTACGAAGACTGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13147:266..415+

>mRNA_E-fasciculatus_F_contig13147.2380.1 ID=mRNA_E-fasciculatus_F_contig13147.2380.1|Name=mRNA_E-fasciculatus_F_contig13147.2380.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=300bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13147:266..415+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACGACCGCAGGGGCGCTGCGTTCCCGTCGGACCCTCCTTTCCCTTCCTT
CGTGGCGACGGCGGAAGGAGACGGGGACGAGTCGTCCCTGCAGGAGATTT
GGTGCCCGCAGGGGGAGGAGGACCCGCTGGAGATTGTTTACGAAGACTGA
GACGACCGCAGGGGCGCTGCGTTCCCGTCGGACCCTCCTTTCCCTTCCTT
CGTGGCGACGGCGGAAGGAGACGGGGACGAGTCGTCCCTGCAGGAGATTT
GGTGCCCGCAGGGGGAGGAGGACCCGCTGGAGATTGTTTACGAAGACTGA
back to top