mRNA_E-fasciculatus_F_contig13098.2343.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13098.2343.1 vs. uniprot
Match: D7FS10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS10_ECTSI) HSP 1 Score: 555 bits (1431), Expect = 4.190e-195 Identity = 310/334 (92.81%), Postives = 322/334 (96.41%), Query Frame = 1
Query: 1 VRSELEDEFRVSFREGAMGMTLSMDPDSRDAVVGKIVEQGQAFRAGVQTDDLVIGVGEHTVSSYGTVLAFMNIMGRPIELHFRKSERGXXXXXXXXXXXXPISAXXXXXXXXXXXXTAAVPEGYRATKSGGLSKSGPIRGNLEGARGDSLSRKLKGAAGAKSLGVIAPRSPISPRSQGKVSGFSGLGREVASSDAGFSEKMEHGVVVTKYGKKGAAAQRLLYLDGVSMSVAWRDLDARSPGHSRSTSLTNIIKGKREALALAHLIEVIAGDDPDPTRPSEKGSAMLREHCDESLLERSFALQFKERSLEMTCDSHAEMRQLVAGFRDLQKQCGR 1002
VRSELEDEFRVSFREGAMGMTLSMDPD+RDA+VGKIVEQGQAFRAG+QTDDLVIGVGE+TVSSYGTVLAFMNIMGRPIELHFRKS++G XXXXXXXX ISAX XXXXXXXXXX+AA PEG+RATK+GG+SKSGPIRGNLEG RGDSLSRKLKGAAG KS G IAPRSPISPRSQGKVSGFSGLGREVASSDAGFSEKMEHGVVVTKYGKKGAAAQRLLYLDGVSMSVAWRDLDARSPGHSRS+SLTNIIKGKREALALAHL+EVIAGDDPDPTRPSEKGSAMLREHCDESLLERSFALQFKERSLEMTCDSHAEMRQLVAGFRDLQKQ GR
Sbjct: 191 VRSELEDEFRVSFREGAMGMTLSMDPDTRDAIVGKIVEQGQAFRAGIQTDDLVIGVGENTVSSYGTVLAFMNIMGRPIELHFRKSDKGSGDGXXXXXXXX-ISAXHXXXXXXXXXXSAAKPEGFRATKAGGVSKSGPIRGNLEGTRGDSLSRKLKGAAGVKSAGGIAPRSPISPRSQGKVSGFSGLGREVASSDAGFSEKMEHGVVVTKYGKKGAAAQRLLYLDGVSMSVAWRDLDARSPGHSRSSSLTNIIKGKREALALAHLLEVIAGDDPDPTRPSEKGSAMLREHCDESLLERSFALQFKERSLEMTCDSHAEMRQLVAGFRDLQKQYGR 523
BLAST of mRNA_E-fasciculatus_F_contig13098.2343.1 vs. uniprot
Match: A0A835YTV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTV8_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 1.460e-9 Identity = 42/105 (40.00%), Postives = 58/105 (55.24%), Query Frame = 1
Query: 1 VRSELEDEFRVSFREGAMGMTLSMDPDSRDAVVGKIVEQGQAFRAGVQTDDLVIGVGEHTVSS-----------------YGTVLAFMNIMGRPIELHFRKSERG 264
+R L EF V F EG++GM+L + + A V K+VE+GQA GV+ D+V VG+ +S YGT LAF+NI+GRP+ L F+K E G
Sbjct: 1216 LRRALPKEFSVEFNEGSIGMSL-VRTAADTAEVSKVVERGQAHTGGVKAGDVVSAVGDSVATSMNXXXXXXXXXXXXXXXYGTTLAFLNILGRPVTLWFQKGEDG 1319
BLAST of mRNA_E-fasciculatus_F_contig13098.2343.1 vs. uniprot
Match: A0A6U1C867_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1C867_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 8.360e-6 Identity = 43/141 (30.50%), Postives = 67/141 (47.52%), Query Frame = 1
Query: 583 AGFSEKMEHGVVVTKYGKKGAAAQRLLYLDGVSMSVAWRDLDARSPGHSR---STSLTNIIKGKREALALAHLIEVIAGDDPDPTRPSEKGSAMLREHCDESLLERSF-------ALQFKERSLEMTCDSHAEMRQLVAGF 975
A F EK+E+GV V K+ ++G AA RLL L S+ W + + R S+ K ++ L L EV G+ PDP P + G+ LR H + R +L F +R++++ +S A+ + L GF
Sbjct: 167 AEFKEKLENGVQVVKFNRRGQAAFRLLVLKEDGRSLTW-SVPRGTQADGRLGFGQSVRRKFSAKSDSFDLRSLSEVRLGEAPDPAFPGKFGTETLRMHASKYAQIRQMQEHGLCVSLIFPDRTVDLGSNSQAQRQFLTRGF 306 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13098.2343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13098.2343.1 >prot_E-fasciculatus_F_contig13098.2343.1 ID=prot_E-fasciculatus_F_contig13098.2343.1|Name=mRNA_E-fasciculatus_F_contig13098.2343.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=335bp VRSELEDEFRVSFREGAMGMTLSMDPDSRDAVVGKIVEQGQAFRAGVQTDback to top mRNA from alignment at E-fasciculatus_F_contig13098:216..3735+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13098.2343.1 ID=mRNA_E-fasciculatus_F_contig13098.2343.1|Name=mRNA_E-fasciculatus_F_contig13098.2343.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3520bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13098:216..3735+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13098:216..3735+ >mRNA_E-fasciculatus_F_contig13098.2343.1 ID=mRNA_E-fasciculatus_F_contig13098.2343.1|Name=mRNA_E-fasciculatus_F_contig13098.2343.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2010bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13098:216..3735+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |