mRNA_E-fasciculatus_F_contig13094.2341.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13094.2341.1
Unique NamemRNA_E-fasciculatus_F_contig13094.2341.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13094.2341.1 vs. uniprot
Match: D7FXZ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ3_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 4.440e-22
Identity = 61/154 (39.61%), Postives = 89/154 (57.79%), Query Frame = 2 
Query: 2351 DSSKTRFKKELVPLIEAFINGVEEVSEEWRGKQLPNTTEEGVHDAMISIFLKNKRFKGLVEDMAKQCDKE---GKGAIMENFRSLWAGLSADKVVATTEGWQFRRALLGAISAPSKTTFDDVKAFVGGTLSRKAYKQATARRNDTEADQNLHDL 2803
            D+S++R KK L   +  F+N +++    W  +   N     V DA +   L NK     +ED+A    K    G  AI +N R+LW  LS+ + VA++EGWQFRR LLGA+  P+ TT+ +V  FVGG+LS +A+ +A  RR+ T+    LHDL
Sbjct:   65 DASRSRMKKVLDHNVSVFVNSLQDACAAWTERLNKNFEPVAVEDATVDALLANKDLTAFMEDLASSSRKHKERGNEAIRDNIRALWKRLSSSETVASSEGWQFRRVLLGALCGPN-TTYKEVHEFVGGSLSHRAFNEAQIRRDATDTTSILHDL 217
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13094.2341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXZ3_ECTSI4.440e-2239.61Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13094contigE-fasciculatus_F_contig13094:19..3726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size3649
Cds size666
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13094.2341.1prot_E-fasciculatus_F_contig13094.2341.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13094 2218..2883 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927813.7437034-UTR-E-fasciculatus_F_contig13094:18..19271622927813.7437034-UTR-E-fasciculatus_F_contig13094:18..1927Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13094 19..1927 +
1695995705.6137574-UTR-E-fasciculatus_F_contig13094:18..19271695995705.6137574-UTR-E-fasciculatus_F_contig13094:18..1927Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13094 19..1927 +
1622927813.766069-UTR-E-fasciculatus_F_contig13094:1986..22171622927813.766069-UTR-E-fasciculatus_F_contig13094:1986..2217Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13094 1987..2217 +
1695995705.622152-UTR-E-fasciculatus_F_contig13094:1986..22171695995705.622152-UTR-E-fasciculatus_F_contig13094:1986..2217Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13094 1987..2217 +
1622927813.7911634-UTR-E-fasciculatus_F_contig13094:2883..37261622927813.7911634-UTR-E-fasciculatus_F_contig13094:2883..3726Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13094 2884..3726 +
1695995705.640254-UTR-E-fasciculatus_F_contig13094:2883..37261695995705.640254-UTR-E-fasciculatus_F_contig13094:2883..3726Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13094 2884..3726 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927813.780126-CDS-E-fasciculatus_F_contig13094:2217..28831622927813.780126-CDS-E-fasciculatus_F_contig13094:2217..2883Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13094 2218..2883 +
1695995705.63094-CDS-E-fasciculatus_F_contig13094:2217..28831695995705.63094-CDS-E-fasciculatus_F_contig13094:2217..2883Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13094 2218..2883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13094.2341.1

>prot_E-fasciculatus_F_contig13094.2341.1 ID=prot_E-fasciculatus_F_contig13094.2341.1|Name=mRNA_E-fasciculatus_F_contig13094.2341.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=222bp
MLVSPRWEHTILFHLALPGRNVFVAVQTVAAVSTLKLVRLRLRLFYFFPS
FTPEQPSGKKPRVDDGGAMSDSSKTRFKKELVPLIEAFINGVEEVSEEWR
GKQLPNTTEEGVHDAMISIFLKNKRFKGLVEDMAKQCDKEGKGAIMENFR
SLWAGLSADKVVATTEGWQFRRALLGAISAPSKTTFDDVKAFVGGTLSRK
AYKQATARRNDTEADQNLHDL*
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mRNA from alignment at E-fasciculatus_F_contig13094:19..3726+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13094.2341.1 ID=mRNA_E-fasciculatus_F_contig13094.2341.1|Name=mRNA_E-fasciculatus_F_contig13094.2341.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3708bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13094:19..3726+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAATACAGTCCCTCCTACTCCTACTGCTTCCAACATACCCCACAGCATGG
TTTGTACCGGCATGCAATTCCCCTCCTCTCCTTCGCCTGAGATAGCTATC
CGTTGCATGCGTGGCCGGCGGTACCCATGCGCAACCAACCAAATGCAGAG
GTACTGCCAACCGTAGCGTTGTCTAGATATGTAGATGTCAAGGGCGTGAC
ACCGTACATTATTCGTACAATATTATTGTTAACCGGACGAGACCACTCTC
TCTCCCTCACAAAGTCAGTTCAACAAATTTACGCCGTCTGTTGGCAACGA
CCTGATTACGAAAGTGTAGCTTTTTGTGTACGGACCTTGTCCTCTCAAGT
CATAAGGTCGTCGTCGCATATATGGGCAGATCACAGCAACCACCCTCTCT
TGCTCACTCGCGGTGATTTTGAATTTCGAAAAATAACCTCCAACGGCCGG
AAAATGACCATGCAACACCATTGACGGTGATTTTGAATTTCGAAAAATAT
ACTCCAACGGCTGGCAAATCATCATATGCCCTTTGTGGGGATTTGTACAA
TAGTCTACTTCTGACCTGGACGGCTAGCGTGAGTTGGACCGGGACGAAAC
TACATGTAGAAGGTACTGAGCGGAGAGCGGAACGGCGTCAAGCTAAGTAT
AACAATGACAAACCCGTGTAGGTCTTGAGGAGGCCCCAGTCGAGAATGCT
GGTGTTACCGCCTCCTCAACAGTAATTGTTTAGCCTCCCTCCTTTTTATG
TTCGTCTAGATCAACATGCAAACACGGATGAGAGTATTTCTCACGTGTTT
CCGCCGGTCTCTGGTGTTGAGAACCAAACAAACTGTCTCATTTGACATGA
TAAGCCCTACGCTTTGTGCATCGGGTATTTTCTCCCTTCGAACAATCCCT
GCTTCACTCCTTCCTCCTTCCGCTTCGCGCCATATTGCACACATCAGCCT
ACCTGCATGTAGTAAGATCAACAGGACATAAACAACAAACACGGATAAGA
GTATTTCTCTCGTGTTGTGGGCGGTCACCCACCCCCAGAACCCGCTTTCC
TGTATCTCTACGTTGGGAATAAACATGTCCCAGAAACCCACGTCATGCGC
TTGATGCACCGGATGTTTTCTCTAGCCGAACAATCCCTCATTCACAACTT
CCGCCTCACGGCATATTGCACACAACGTGAAATGCACGGATGAGCGTATA
TGTCACGTGTTGTGGCCGGCTTCCACCCGCGACCCCCCAGAACCCGCATG
CTTGTATCTCCACGTTGGGAACAAAACAACGGTCGTACGGCATAGGTCAT
ATGCTTTGTGCATCGGTTCAGTTCTTCTCCCCCTGCTTCATTTCTTCCGC
TTCACGCCATGTTGCCCACATCAGCCTACCTGTAGTTAGTCTAGATCAAC
AAGACCTACACGGGATGAGAGTATTTCTCGCGTGTTGTGGGCGGTCTTCA
CCCGACCCCCAGAATCCGCTTTCTTGTATCCCTACGTTGGGAATGAACAC
GTCCCATACGCCATAGACTACTGTACGTCATGCGCTTGATGCACCGAAAA
TTTTCTCCCGTCGAACATTCCCGACAACACTCCTTGCGCCTCACGGCATA
TTGCACACGTCATGACATACATGGATGAGGGTATATGTCACGTGTTGTGG
CCGGTCTTTACCCCCGAACGCTCAGAACCCGCATGCTTGTATCTCCACGT
TGGGAACAAAACAACGGTCATACGGCATAGGTCATATGCTTTGTGCATCG
GTTCGGTTCTCCCGTAGACCAACCCCTGCTTCATTTCTTGCGCTTCACGC
CATATTGCCCACATCAGCCTACCTGCAGTTAGTCTAGATCAACAAGACCT
ACACGTTCTTTTTTCAGAGCTAATGTGAGAAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACACGGGATAAGAGT
ATTTCTCGCGGGTTGTGGGCGGCCTTCACCCGACCCCCGAATCCGCTTTT
CTGTATCCCTACGTTGGGAATAAAACAGTCCCATACACCATACGTCATGC
GCTTGATGCACTGAAATTTTTCTCCCGTCGAACATTCCCGACATCACTCC
TTGCGCCTCACGGCATATTACACACGTCATAACATGCACGGATGACAGTA
TTTGTCACGTGTTGTGGCCGGTCTTCACCCCCGAACGCTCAGAACCCGCA
TGCTTGTATCTCCACGTTGGGAACACACCATCCTGTTCCACCTGGCCCTA
CCGGGCCGAAATGTTTTTGTCGCAGTACAAACCGTTGCTGCAGTCTCTAC
ATTGAAATTAGTTCGGCTCCGTCTTCGGCTGTTTTATTTTTTCCCCAGTT
TCACGCCAGAGCAGCCGTCCGGAAAGAAGCCTCGTGTGGATGATGGGGGT
GCGATGTCGGATTCGTCCAAGACACGTTTCAAGAAGGAATTGGTTCCGCT
GATCGAGGCCTTCATCAACGGCGTCGAGGAGGTGTCCGAGGAGTGGCGTG
GGAAACAACTCCCGAACACGACAGAAGAGGGCGTTCACGATGCTATGATC
AGTATTTTCCTGAAAAATAAAAGGTTCAAAGGCCTGGTCGAGGATATGGC
GAAACAATGCGACAAGGAGGGCAAGGGGGCGATCATGGAAAACTTCCGCT
CCTTATGGGCAGGCTTGTCAGCGGATAAGGTCGTTGCGACTACCGAGGGA
TGGCAGTTTCGGCGGGCGCTGTTGGGCGCGATCAGCGCCCCCTCGAAAAC
GACCTTTGACGACGTCAAAGCGTTCGTTGGTGGAACACTGAGTCGAAAGG
CGTACAAGCAGGCGACGGCCAGGAGGAACGACACAGAGGCCGACCAAAAT
CTTCATGATCTGTAAGTGAGAAGTTTGTTGCGAAACATGGGATGCAATAC
ATCACAGTCCGTGTTAAAACGTGTGTCGTGTCTGTAGGTATTCTTCTCTA
CCGAGCAGGGTAGGGGAGCAATGAAACATGGGGGCGGAAGTCGACATAAA
TAAGACACGACTGCAGCCGGAAGAGCGGGACGGTGATGGCTGGACGGATA
GAGAAATGTGTCTCAGAATGATGATGACGATTGCGACGTATGCATTCCCA
CGTTTTATCCCGTCGTGTCACATACCCCAACCCTCCCGTCGCCATGCCCC
CGAGGTGATGTGTGGGTGTTCGGGAGTCATGCGTCTTCGTTGTTGTTCCT
GTATAGCCTGGTGCATCCTCTATATCTTCCTTTTCGTTCAGTTGTCCCTC
TCTCTATATATATTTCGTGTCTCTCTTATTCGGTCTATTTTTCTTTGGCG
TTCGGGCCTTTGTCTCTTTTGACCGCGATCATCGATCGCCTGTATCCCGG
TTAGTTTTCTCCATACGGTAGGGTGGGTTTGTTCGGGTACAAAACTACCC
GCAACACTGAGGAATATTCTGGCGTCCATTACTATTTCTATGTTATATTA
TTATTTGTTTTTGGGAATACGTGAACCCTGGGTGTCTTGTGACCACGGAA
GGCGCCCTTGTCAGTTGGGCCAGTACGGACAACATGAGGTGCTGAGCATA
GCAGAACGGTTGTCAACCCTGAAGACAGCAACAACAACAACAACAACAAC
AACAACGACCGAACGTGTTGTGACTGCGGCCGTACTGGAGCATTCCGGAC
TTCATGTTTGGTCGCCATCATGTGAATAGCAGACAGCCTACACTTGGAGG
CAATTTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13094:19..3726+

>mRNA_E-fasciculatus_F_contig13094.2341.1 ID=mRNA_E-fasciculatus_F_contig13094.2341.1|Name=mRNA_E-fasciculatus_F_contig13094.2341.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1332bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13094:19..3726+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTTGTATCTCCACGTTGGGAACACACCATCCTGTTCCACCTGGCCCT
ACCGGGCCGAAATGTTTTTGTCGCAGTACAAACCGTTGCTGCAGTCTCTA
CATTGAAATTAGTTCGGCTCCGTCTTCGGCTGTTTTATTTTTTCCCCAGT
TTCACGCCAGAGCAGCCGTCCGGAAAGAAGCCTCGTGTGGATGATGGGGG
TGCGATGTCGGATTCGTCCAAGACACGTTTCAAGAAGGAATTGGTTCCGC
TGATCGAGGCCTTCATCAACGGCGTCGAGGAGGTGTCCGAGGAGTGGCGT
GGGAAACAACTCCCGAACACGACAGAAGAGGGCGTTCACGATGCTATGAT
CAGTATTTTCCTGAAAAATAAAAGGTTCAAAGGCCTGGTCGAGGATATGG
CGAAACAATGCGACAAGGAGGGCAAGGGGGCGATCATGGAAAACTTCCGC
TCCTTATGGGCAGGCTTGTCAGCGGATAAGGTCGTTGCGACTACCGAGGG
ATGGCAGTTTCGGCGGGCGCTGTTGGGCGCGATCAGCGCCCCCTCGAAAA
CGACCTTTGACGACGTCAAAGCGTTCGTTGGTGGAACACTGAGTCGAAAG
GCGTACAAGCAGGCGACGGCCAGGAGGAACGACACAGAGGCCGACCAAAA
TCTTCATGATCTGTAAATGCTTGTATCTCCACGTTGGGAACACACCATCC
TGTTCCACCTGGCCCTACCGGGCCGAAATGTTTTTGTCGCAGTACAAACC
GTTGCTGCAGTCTCTACATTGAAATTAGTTCGGCTCCGTCTTCGGCTGTT
TTATTTTTTCCCCAGTTTCACGCCAGAGCAGCCGTCCGGAAAGAAGCCTC
GTGTGGATGATGGGGGTGCGATGTCGGATTCGTCCAAGACACGTTTCAAG
AAGGAATTGGTTCCGCTGATCGAGGCCTTCATCAACGGCGTCGAGGAGGT
GTCCGAGGAGTGGCGTGGGAAACAACTCCCGAACACGACAGAAGAGGGCG
TTCACGATGCTATGATCAGTATTTTCCTGAAAAATAAAAGGTTCAAAGGC
CTGGTCGAGGATATGGCGAAACAATGCGACAAGGAGGGCAAGGGGGCGAT
CATGGAAAACTTCCGCTCCTTATGGGCAGGCTTGTCAGCGGATAAGGTCG
TTGCGACTACCGAGGGATGGCAGTTTCGGCGGGCGCTGTTGGGCGCGATC
AGCGCCCCCTCGAAAACGACCTTTGACGACGTCAAAGCGTTCGTTGGTGG
AACACTGAGTCGAAAGGCGTACAAGCAGGCGACGGCCAGGAGGAACGACA
CAGAGGCCGACCAAAATCTTCATGATCTGTAA
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