mRNA_E-fasciculatus_F_contig13091.2340.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13091.2340.1
Unique NamemRNA_E-fasciculatus_F_contig13091.2340.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13091.2340.1 vs. uniprot
Match: D8LMP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP8_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 6.250e-22
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 1
Query:    1 QGWALVLGLMEEMRAEGVAPDVFTFTTAITACGKAGQWERALDLLE 138
            +GWALVLGLMEEMRAEGVAPDVFTFTTAITACGKAGQWERALDLLE
Sbjct:  171 EGWALVLGLMEEMRAEGVAPDVFTFTTAITACGKAGQWERALDLLE 216          
BLAST of mRNA_E-fasciculatus_F_contig13091.2340.1 vs. uniprot
Match: A0A6H5KUL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUL4_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.160e-21
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 1
Query:    1 QGWALVLGLMEEMRAEGVAPDVFTFTTAITACGKAGQWERALDLLE 138
            +GWA+VLGLMEEMRAEGVAPDVFTFTTAITACGKAGQWERALDLLE
Sbjct:  421 EGWAIVLGLMEEMRAEGVAPDVFTFTTAITACGKAGQWERALDLLE 466          
BLAST of mRNA_E-fasciculatus_F_contig13091.2340.1 vs. uniprot
Match: A0A7S2A2A2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A2A2_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.080e-7
Identity = 20/44 (45.45%), Postives = 33/44 (75.00%), Query Frame = 1
Query:    7 WALVLGLMEEMRAEGVAPDVFTFTTAITACGKAGQWERALDLLE 138
            W   L L+E+M+ +GV PD ++++ AI+ACG  G+WE AL+L++
Sbjct:  102 WKHALDLLEQMKKDGVVPDAYSYSAAISACGAEGRWEEALNLIK 145          
BLAST of mRNA_E-fasciculatus_F_contig13091.2340.1 vs. uniprot
Match: A0A7S2ALK4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ALK4_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 7.720e-7
Identity = 21/36 (58.33%), Postives = 30/36 (83.33%), Query Frame = 1
Query:   31 EEMRAEGVAPDVFTFTTAITACGKAGQWERALDLLE 138
            +EMR  GV P+V +F  AI+ACGKAGQWE+A+++L+
Sbjct:    1 DEMRDNGVNPNVVSFNAAISACGKAGQWEKAIEVLQ 36          
BLAST of mRNA_E-fasciculatus_F_contig13091.2340.1 vs. uniprot
Match: A0A1Z5J9M9_FISSO (Smr domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J9M9_FISSO)

HSP 1 Score: 52.4 bits (124), Expect = 1.310e-6
Identity = 21/46 (45.65%), Postives = 33/46 (71.74%), Query Frame = 1
Query:    1 QGWALVLGLMEEMRAEGVAPDVFTFTTAITACGKAGQWERALDLLE 138
            Q W   L L+  M+ +G+ PD+ T+++AI+AC  AGQW+RAL +L+
Sbjct:  585 QWWECALSLLRRMKEDGLKPDMPTYSSAISACEAAGQWQRALSILQ 630          
BLAST of mRNA_E-fasciculatus_F_contig13091.2340.1 vs. uniprot
Match: A0A7S4IIT4_9STRA (Hypothetical protein n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IIT4_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.310e-6
Identity = 21/45 (46.67%), Postives = 32/45 (71.11%), Query Frame = 1
Query:    1 QGWALVLGLMEEMRAEGVAPDVFTFTTAITACGKAGQWERALDLL 135
            Q W   L L+  M+ EG+ PDV T+++AI++C  AGQW+RA+ +L
Sbjct:  776 QWWECSLSLLRRMKEEGIVPDVQTYSSAISSCEAAGQWQRAIGIL 820          
BLAST of mRNA_E-fasciculatus_F_contig13091.2340.1 vs. uniprot
Match: B5Y463_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y463_PHATC)

HSP 1 Score: 51.2 bits (121), Expect = 3.340e-6
Identity = 22/44 (50.00%), Postives = 30/44 (68.18%), Query Frame = 1
Query:    7 WALVLGLMEEMRAEGVAPDVFTFTTAITACGKAGQWERALDLLE 138
            W   L L+  M+ EG  PD  TF++AI+AC  AGQW+RAL +L+
Sbjct:  179 WECALSLLRRMQEEGQQPDTQTFSSAISACESAGQWQRALRVLQ 222          
BLAST of mRNA_E-fasciculatus_F_contig13091.2340.1 vs. uniprot
Match: A0A7S0C4H7_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C4H7_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.340e-6
Identity = 19/46 (41.30%), Postives = 33/46 (71.74%), Query Frame = 1
Query:    1 QGWALVLGLMEEMRAEGVAPDVFTFTTAITACGKAGQWERALDLLE 138
            Q W   L ++E M+A+G+ PD F+++  I+ACG AG+W  A++L++
Sbjct:  205 QLWYKALRILEMMKADGIKPDAFSYSNVISACGFAGRWREAMELIQ 250          
BLAST of mRNA_E-fasciculatus_F_contig13091.2340.1 vs. uniprot
Match: A0A7S1Z0K5_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z0K5_TRICV)

HSP 1 Score: 50.8 bits (120), Expect = 4.570e-6
Identity = 20/40 (50.00%), Postives = 30/40 (75.00%), Query Frame = 1
Query:   19 LGLMEEMRAEGVAPDVFTFTTAITACGKAGQWERALDLLE 138
            L L+  M+ EG+APD +T+T A++ACG  G+W  +LDL+E
Sbjct:  266 LDLLRIMKDEGIAPDAYTYTGAMSACGSEGRWRESLDLME 305          
BLAST of mRNA_E-fasciculatus_F_contig13091.2340.1 vs. uniprot
Match: A0A7S1NU60_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NU60_9EUGL)

HSP 1 Score: 48.5 bits (114), Expect = 9.170e-6
Identity = 19/36 (52.78%), Postives = 28/36 (77.78%), Query Frame = 1
Query:   28 MEEMRAEGVAPDVFTFTTAITACGKAGQWERALDLL 135
            ME+M+A+G+     T++TAI+ACG  GQW+RAL L+
Sbjct:    1 MEDMQAQGIHASTITYSTAISACGTGGQWQRALQLM 36          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13091.2340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LMP8_ECTSI6.250e-2297.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUL4_9PHAE1.160e-2195.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2A2A2_9STRA5.080e-745.45Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2ALK4_9STRA7.720e-758.33Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A1Z5J9M9_FISSO1.310e-645.65Smr domain-containing protein n=1 Tax=Fistulifera ... [more]
A0A7S4IIT4_9STRA1.310e-646.67Hypothetical protein n=4 Tax=Odontella aurita TaxI... [more]
B5Y463_PHATC3.340e-650.00Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S0C4H7_9STRA3.340e-641.30Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S1Z0K5_TRICV4.570e-650.00Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S1NU60_9EUGL9.170e-652.78Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13091contigE-fasciculatus_F_contig13091:2..139 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue2.4e-13
Seed eggNOG ortholog2880.D8LMP8
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size111
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927813.624328-CDS-E-fasciculatus_F_contig13091:1..1121622927813.624328-CDS-E-fasciculatus_F_contig13091:1..112Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13091 2..112 -
1695995705.5911484-CDS-E-fasciculatus_F_contig13091:1..1121695995705.5911484-CDS-E-fasciculatus_F_contig13091:1..112Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13091 2..112 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927813.6373286-UTR-E-fasciculatus_F_contig13091:112..1391622927813.6373286-UTR-E-fasciculatus_F_contig13091:112..139Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13091 113..139 -
1695995705.6041195-UTR-E-fasciculatus_F_contig13091:112..1391695995705.6041195-UTR-E-fasciculatus_F_contig13091:112..139Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13091 113..139 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13091.2340.1prot_E-fasciculatus_F_contig13091.2340.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13091 2..112 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13091.2340.1

>prot_E-fasciculatus_F_contig13091.2340.1 ID=prot_E-fasciculatus_F_contig13091.2340.1|Name=mRNA_E-fasciculatus_F_contig13091.2340.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=37bp
MEEMRAEGVAPDVFTFTTAITACGKAGQWERALDLLE
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mRNA from alignment at E-fasciculatus_F_contig13091:2..139-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13091.2340.1 ID=mRNA_E-fasciculatus_F_contig13091.2340.1|Name=mRNA_E-fasciculatus_F_contig13091.2340.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=138bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13091:2..139- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAAGGCTGGGCACTCGTGCTCGGGCTGATGGAGGAGATGCGCGCGGAGGG GGTAGCCCCGGACGTGTTCACCTTCACCACCGCCATCACGGCCTGCGGAA AGGCGGGCCAATGGGAGCGGGCGCTTGACCTGCTTGAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13091:2..139-

>mRNA_E-fasciculatus_F_contig13091.2340.1 ID=mRNA_E-fasciculatus_F_contig13091.2340.1|Name=mRNA_E-fasciculatus_F_contig13091.2340.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=222bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13091:2..139- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGGAGATGCGCGCGGAGGGGGTAGCCCCGGACGTGTTCACCTTCAC
CACCGCCATCACGGCCTGCGGAAAGGCGGGCCAATGGGAGCGGGCGCTTG
ACCTGCTTGAAATGGAGGAGATGCGCGCGGAGGGGGTAGCCCCGGACGTG
TTCACCTTCACCACCGCCATCACGGCCTGCGGAAAGGCGGGCCAATGGGA
GCGGGCGCTTGACCTGCTTGAA
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