mRNA_E-fasciculatus_F_contig1309.2338.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1309.2338.1
Unique NamemRNA_E-fasciculatus_F_contig1309.2338.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1309.2338.1 vs. uniprot
Match: D7FVT6_ECTSI (S1-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT6_ECTSI)

HSP 1 Score: 335 bits (859), Expect = 1.520e-109
Identity = 199/238 (83.61%), Postives = 203/238 (85.29%), Query Frame = 1 
Query:  304 MAGVGRRTLYRKSVTDDYLNSTPEPGENEEIALAQAPRGSNIIEIMLANGEPSLALLPTRFRKLIWVKRGDYLITSTSAGDFETSAGETGKVRHRVEHILNKDQIKHLKKQELWPADDAFGGARLAAGAGSSCPRDGWGDAVAGXXXXXXXXXXKGMGAAAIEGKXXXXXXXXXXXXTAEKDVGSGVKVGVDGAAGEITSGALRSEGXXXXXXXXXXXXXXXXSDLFVNNNRAAMMQL 1017
            MAGVGRRTLYRKSVTDDYLNSTPEPGENEEI LAQAPRGSNIIEIMLANGEPSLALLPTRFRKLIWVKRGDYLITSTSAGDFETSAGETGKVRHRVEHILNKDQIKHLKK+ELWPADDAFGGA LAAGAGSS PRDGWGDAVA           KGMGAAAIE K  XXX       TAEK+VGSGVKVG DGA GE+ SG       XXXXXXXXXXXXXX SDLFVNNNRAAMM+L
Sbjct:    1 MAGVGRRTLYRKSVTDDYLNSTPEPGENEEIVLAQAPRGSNIIEIMLANGEPSLALLPTRFRKLIWVKRGDYLITSTSAGDFETSAGETGKVRHRVEHILNKDQIKHLKKRELWPADDAFGGALLAAGAGSSGPRDGWGDAVADGGGSSDSGGSKGMGAAAIEEKGNXXXEVAATAATAEKEVGSGVKVGGDGA-GEVPSGXXXXX--XXXXXXXXXXXXXXMSDLFVNNNRAAMMRL 235
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1309.2338.1 vs. uniprot
Match: A0A835YV91_9STRA (S1-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV91_9STRA)

HSP 1 Score: 147 bits (372), Expect = 6.000e-37
Identity = 78/163 (47.85%), Postives = 92/163 (56.44%), Query Frame = 1 
Query:  304 MAGVGRRTLYRKSVTDDYLNSTPEPGENEEIALAQAPRGSNIIEIMLANGEPSLALLPTRFRKLIWVKRGDYLITSTSAGDFETSA-----------------------------------------------GETGKVRHRVEHILNKDQIKHLKKQELWPA 651
            MAGVGRRT YRKSV ++YL+  PEPGE   +A A   RGSN+IE+ L  GE SLA+LPTRFRKLIWVKRGDY++ STS GD ET                                                 GE GKVRHRVEH+L+KDQ+KH++K   WPA
Sbjct:    1 MAGVGRRTNYRKSVQEEYLSGLPEPGEGTAVAKALGSRGSNVIEVELQCGEQSLAMLPTRFRKLIWVKRGDYVLVSTSTGDIETHTAAAAAHARYAVQCNAPAYRPAQRGAHASKPALRRRRSYRAVRTSALDGEEGKVRHRVEHVLSKDQVKHIRKIGKWPA 163
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1309.2338.1 vs. uniprot
Match: A0A7S1GDQ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GDQ2_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.860e-33
Identity = 66/131 (50.38%), Postives = 84/131 (64.12%), Query Frame = 1 
Query:  304 MAGVGRRTLYRKSVTDDYLNSTPEPGENEEIALAQAPRGSNIIEIMLANGEPSLALLPTRFRKLIWVKRGDYLITSTSAGDFETSAGETGKVRHRVEHILNKDQIKHLKKQELWPA---DDAFGGARLAAG 687
            MAGV RR+ YRK+V    L+   EP E + I    A RGSN+++++   GE  L +LPTR+RKL+WVKRGD+LI   +  DFET+ G+ G VR  V H+L KDQ+KHLKK   WPA   DD   GA  A G
Sbjct:    1 MAGVKRRSKYRKNVEASVLDEMHEPEEGQIIVRVVASRGSNLLDVVTEAGEGGLCMLPTRYRKLVWVKRGDHLIVDCADDDFETAGGDKGAVRFSVAHVLYKDQVKHLKKIGKWPAAFDDDGAAGAGAAGG 131
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1309.2338.1 vs. uniprot
Match: A0A4D9CWY1_9STRA (S1-like domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWY1_9STRA)

HSP 1 Score: 135 bits (340), Expect = 5.990e-33
Identity = 68/126 (53.97%), Postives = 91/126 (72.22%), Query Frame = 1 
Query:  304 MAGVGRRTLYRKSVTDDYLNSTPEPG--ENEEIALAQAPRGSNIIEIMLA----NGEP----SLALLPTRFRKLIWVKRGDYLITSTSAGDFETSAGETGKVRHRVEHILNKDQIKHLKKQELWPA 651
            M+G GR++ YRKSVT++ L+S PEP     E +A     RG NI+++ +A    +GE     SLALLPT+FRKLIWVKRGD++I S ++ DF+T+AGE GKV+  VEHIL K+Q+KHLK Q +WPA
Sbjct:    1 MSGAGRKSAYRKSVTEEVLHSFPEPNVAAGERVARVVQSRGGNILQVNVAPDPKSGEDENGGSLALLPTKFRKLIWVKRGDFVIVSGTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPA 126
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1309.2338.1 vs. uniprot
Match: A0A7S2UVE6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVE6_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.070e-32
Identity = 64/120 (53.33%), Postives = 82/120 (68.33%), Query Frame = 1 
Query:  307 AGVGRRTLYRKSVTDDYLNSTPEPGENEEIALAQAPRGSNIIEIMLANGEPSLALLPTRFRKLIWVKRGDYLITSTSAGDFETSAGETGKVRHRVEHILN-KDQIKHLKKQELWPADDAF 663
            AG GRRTLYRKSV + YLN TP P E E I      RGSNI+++   +G  +LA+LPT+FRKLIWVKRGD+LI S S GD  T++G +GKV+  V H+L+ +DQ  HL+    WP + A 
Sbjct:    1 AGSGRRTLYRKSVMESYLNDTPVPEEGERIVKVVESRGSNILQVQCPDGTKALAMLPTKFRKLIWVKRGDFLIVSESQGDVSTASGGSGKVKFMVSHVLHSRDQRAHLQSTGHWPGEFAL 120
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1309.2338.1 vs. uniprot
Match: A0A812LGH3_9DINO (Eif1ad protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812LGH3_9DINO)

HSP 1 Score: 129 bits (324), Expect = 2.870e-31
Identity = 61/116 (52.59%), Postives = 79/116 (68.10%), Query Frame = 1 
Query:  304 MAGVGRRTLYRKSVTDDYLNSTPEPGENEEIALAQAPRGSNIIEIMLANGEPSLALLPTRFRKLIWVKRGDYLITSTSAGDFETSAGETGKVRHRVEHILNKDQIKHLKKQELWPA 651
            MAGV RRT YRK V  D L++   P + +EI       GSNI+E+  A GE +  +LPT++RKLIWVKRGD+LI S  A D++T++G  G V++ VEHIL    IKHLKK+ LWPA
Sbjct:    1 MAGVKRRTKYRKQVEADVLDAFHTPEDGQEIVQIVQSHGSNILEVRDAEGENAKCILPTKYRKLIWVKRGDFLIVSKGAEDYDTASGNKGTVKYMVEHILTASSIKHLKKEGLWPA 116
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1309.2338.1 vs. uniprot
Match: A0A080ZRU2_PHYPR (S1-like domain-containing protein n=1 Tax=Phytophthora parasitica P1976 TaxID=1317066 RepID=A0A080ZRU2_PHYPR)

HSP 1 Score: 129 bits (324), Expect = 3.300e-31
Identity = 64/117 (54.70%), Postives = 81/117 (69.23%), Query Frame = 1 
Query:  304 MAGVGRRTLYRKSVTDDYLNSTPEPGENEEIALAQAPRGSNIIEIMLANGEPSLALLPTRFRKLIWVKRGDYLITSTS-AGDFETSAGETGKVRHRVEHILNKDQIKHLKKQELWPA 651
            M+G GR++ YRK VT   L   PEP ENE I    A RGSN+ E++ ANG  S+ +LPT+FRKLIWVKRGD+LI      G+  T+ G+ G V   VEHIL K+QIK+LK++ELWPA
Sbjct:    1 MSGSGRKSAYRKGVTKRVLYGDPEPKENELIVRVTALRGSNLFEVVDANGVKSVTMLPTKFRKLIWVKRGDFLIVGEGDGGEATTATGKKGAVTSIVEHILYKEQIKNLKRKELWPA 117
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1309.2338.1 vs. uniprot
Match: G4YPL5_PHYSP (S1-like domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YPL5_PHYSP)

HSP 1 Score: 128 bits (322), Expect = 5.650e-31
Identity = 63/117 (53.85%), Postives = 80/117 (68.38%), Query Frame = 1 
Query:  304 MAGVGRRTLYRKSVTDDYLNSTPEPGENEEIALAQAPRGSNIIEIMLANGEPSLALLPTRFRKLIWVKRGDYLITSTS-AGDFETSAGETGKVRHRVEHILNKDQIKHLKKQELWPA 651
            M+G GR++ YRK VT   L   PEP ENE I    A RGSN+ E++ A G  S+ +LPT+FRKLIWVKRGD+LI      G+  T+ G+ G V   VEHIL KDQIK+LK+++LWPA
Sbjct:    1 MSGAGRKSAYRKGVTSRVLYGDPEPKENELIVRVTALRGSNLFEVVDAEGAKSVTMLPTKFRKLIWVKRGDFLIVGEGDGGEATTAKGKKGAVTSIVEHILYKDQIKNLKRKDLWPA 117
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1309.2338.1 vs. uniprot
Match: A0A6A4G9K3_9STRA (S1-like domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4G9K3_9STRA)

HSP 1 Score: 128 bits (322), Expect = 5.970e-31
Identity = 63/117 (53.85%), Postives = 80/117 (68.38%), Query Frame = 1 
Query:  304 MAGVGRRTLYRKSVTDDYLNSTPEPGENEEIALAQAPRGSNIIEIMLANGEPSLALLPTRFRKLIWVKRGDYLITSTS-AGDFETSAGETGKVRHRVEHILNKDQIKHLKKQELWPA 651
            M+G GR++ YRK VT   L   PEP ENE I    A RGSN+ E++ A G  ++ +LPT+FRKLIWVKRGD+LI      G+  T+ G+ G V   VEHIL KDQIK+LK++ELWPA
Sbjct:    1 MSGAGRKSAYRKGVTSRVLYGDPEPKENELIVRVTALRGSNLFEVVDAEGTKAVTMLPTKFRKLIWVKRGDFLIVGEGDGGEATTAKGKKGAVTSIVEHILYKDQIKNLKRKELWPA 117
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1309.2338.1 vs. uniprot
Match: D0MXQ1_PHYIT (S1-like domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MXQ1_PHYIT)

HSP 1 Score: 128 bits (322), Expect = 6.310e-31
Identity = 64/117 (54.70%), Postives = 80/117 (68.38%), Query Frame = 1 
Query:  304 MAGVGRRTLYRKSVTDDYLNSTPEPGENEEIALAQAPRGSNIIEIMLANGEPSLALLPTRFRKLIWVKRGDYLITSTS-AGDFETSAGETGKVRHRVEHILNKDQIKHLKKQELWPA 651
            M+G GR++ YRK VT   L   PEP ENE I    A RGSN+ E+  ANG  S+ +LPT+FRKLIWVKRGD+LI      G+  T+ G+ G V   VEHIL K+QIK+LK++ELWPA
Sbjct:    1 MSGSGRKSAYRKGVTKRVLYGDPEPKENELIVRVTALRGSNLFEVEDANGAKSVTMLPTKFRKLIWVKRGDFLIVGEGDGGETTTATGKKGAVTSIVEHILYKEQIKNLKRKELWPA 117
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1309.2338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVT6_ECTSI1.520e-10983.61S1-like domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835YV91_9STRA6.000e-3747.85S1-like domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S1GDQ2_9STRA2.860e-3350.38Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A4D9CWY1_9STRA5.990e-3353.97S1-like domain-containing protein n=3 Tax=Monodops... [more]
A0A7S2UVE6_9STRA1.070e-3253.33Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A812LGH3_9DINO2.870e-3152.59Eif1ad protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A080ZRU2_PHYPR3.300e-3154.70S1-like domain-containing protein n=1 Tax=Phytopht... [more]
G4YPL5_PHYSP5.650e-3153.85S1-like domain-containing protein n=1 Tax=Phytopht... [more]
A0A6A4G9K3_9STRA5.970e-3153.85S1-like domain-containing protein n=1 Tax=Phytopht... [more]
D0MXQ1_PHYIT6.310e-3154.70S1-like domain-containing protein n=2 Tax=Phytopht... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1309contigE-fasciculatus_F_contig1309:10510..13837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score333.6
Seed ortholog evalue8.4e-89
Seed eggNOG ortholog2880.D7FVT6
Preferred nameEIF1AD
KEGG koko:K15025
GOsGO:0002181,GO:0002183,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.translation initiation factor activity
EggNOG OGsKOG2925@1,KOG2925@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA-binding domain, S1, IF1 type
Ec32 orthologEc-01_002080.1
Exons4
Model size1566
Cds size777
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1309.2338.1prot_E-fasciculatus_F_contig1309.2338.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1309 11385..13351 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927813.2411246-UTR-E-fasciculatus_F_contig1309:10509..106091622927813.2411246-UTR-E-fasciculatus_F_contig1309:10509..10609Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1309 10510..10609 +
1695995705.4508147-UTR-E-fasciculatus_F_contig1309:10509..106091695995705.4508147-UTR-E-fasciculatus_F_contig1309:10509..10609Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1309 10510..10609 +
1622927813.2534616-UTR-E-fasciculatus_F_contig1309:11181..113841622927813.2534616-UTR-E-fasciculatus_F_contig1309:11181..11384Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1309 11182..11384 +
1695995705.4615595-UTR-E-fasciculatus_F_contig1309:11181..113841695995705.4615595-UTR-E-fasciculatus_F_contig1309:11181..11384Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1309 11182..11384 +
1622927813.2967398-UTR-E-fasciculatus_F_contig1309:13351..138371622927813.2967398-UTR-E-fasciculatus_F_contig1309:13351..13837Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1309 13352..13837 +
1695995705.5044138-UTR-E-fasciculatus_F_contig1309:13351..138371695995705.5044138-UTR-E-fasciculatus_F_contig1309:13351..13837Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1309 13352..13837 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927813.2630632-CDS-E-fasciculatus_F_contig1309:11384..115161622927813.2630632-CDS-E-fasciculatus_F_contig1309:11384..11516Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1309 11385..11516 +
1695995705.4705958-CDS-E-fasciculatus_F_contig1309:11384..115161695995705.4705958-CDS-E-fasciculatus_F_contig1309:11384..11516Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1309 11385..11516 +
1622927813.2742255-CDS-E-fasciculatus_F_contig1309:12147..122881622927813.2742255-CDS-E-fasciculatus_F_contig1309:12147..12288Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1309 12148..12288 +
1695995705.4836042-CDS-E-fasciculatus_F_contig1309:12147..122881695995705.4836042-CDS-E-fasciculatus_F_contig1309:12147..12288Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1309 12148..12288 +
1622927813.284626-CDS-E-fasciculatus_F_contig1309:12847..133511622927813.284626-CDS-E-fasciculatus_F_contig1309:12847..13351Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1309 12848..13351 +
1695995705.4926798-CDS-E-fasciculatus_F_contig1309:12847..133511695995705.4926798-CDS-E-fasciculatus_F_contig1309:12847..13351Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1309 12848..13351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1309.2338.1

>prot_E-fasciculatus_F_contig1309.2338.1 ID=prot_E-fasciculatus_F_contig1309.2338.1|Name=mRNA_E-fasciculatus_F_contig1309.2338.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=259bp
MAGVGRRTLYRKSVTDDYLNSTPEPGENEEIALAQAPRGSNIIEIMLANG
EPSLALLPTRFRKLIWVKRGDYLITSTSAGDFETSAGETGKVRHRVEHIL
NKDQIKHLKKQELWPADDAFGGARLAAGAGSSCPRDGWGDAVAGGGGSSD
DGGGKGMGAAAIEGKSDGGGEVAAAATTAEKDVGSGVKVGVDGAAGEITS
GALRSEGGGDEEEEEEEEEEDDMSDLFVNNNRAAMMQLRVDHEDDEEDSD
SDSDSDEE*
back to top

mRNA from alignment at E-fasciculatus_F_contig1309:10510..13837+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1309.2338.1 ID=mRNA_E-fasciculatus_F_contig1309.2338.1|Name=mRNA_E-fasciculatus_F_contig1309.2338.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3328bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1309:10510..13837+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCCTTGCCGTCTCCGGTAGCACACACGGTAAGCTCCCTGGCTCGAACGGC
CTTCGCCTCTACGTCCCCTCGAAAAATACCATCAGCATCTTCCAGTGTCG
GTGAGATAGAACGTTGAGAGCGGCAGTCCCTTTGATTGTTTTTCAAGTCC
CGCAAATAATGCTCCTCCGACAGCAAACACCTGCGACGTCACAGGAGTAC
TTGTACAGATAGAGCACACGGACTGAAGTACAAGTACTGCTGTAGTGAGG
GGGACGGGCATCTTGATTGCGGTGTTCTCGTTGATCCTTCTCAAGCCATT
CCCTTATGTCGTTTTGATTCTCGTGGCAGTTGTACGCTCAACAATACAGA
CGATAGGTACAGCGTGTCGTGTGGAAACATGATCTCAAACCAGCCAGACG
GCCGTCTGCTGGCTCTATGAACAGCAGGGTTGGCCTGCTGCGGTCGTTAG
AGCATCATTAGACGAAAGACGTGCGCACGCACATCGTCCTCGGACCTGCA
GCCAGCCTGGGCGTGCGCCAAATCCAGAGGGAGCAAACTAAGTAACTGCC
AACCACGGGCCTAGACATATTCGCGAAATTGTGTGATAATGCATTTTCAC
GCTGCCATGCCCGTGTGCTGCTGTACACCTGACGCTTGGGGTTGGTGCGG
TCCCCCCCGTACCGACACACAGACGCAAGAGGCATAAGAGGAGGGCCGGT
GACACCGACCAGCTCCGGACCGACTTATCTCGCGAGAGGAGTTTCTCGTA
CGGTTGAGTTTTCGGCTCTTGCGGACTCAGCCACTCAGGACGCTCCGCCC
GCAGCAACCACAGCGGTGCTCCGAAGCGTTCCACACGCCAACAGCTGGTG
ATTGGATTCAGAGCGGTTCGGCGGTATGGCGGGGGTCGGGCGAAGGACGC
TCTACCGCAAGTCGGTCACGGACGACTACCTCAACAGCACGCCCGAGCCG
GGAGAGAACGAAGAGATCGCGCTGGCGCAAGCTCCCCGAGGCTCGAACAT
CATCGAGGTTGGTTTCCTTTTCTTTCATAGAACAGCAGTGCTTGTGCCAA
TTGATGTGATTTACAGATAGTCATGGTTCATGGTGACGGCAGTACGCGTT
GTCCTCTTACTTAGTCCGAGGCTCGTTTTCTCTTCACATCTCCAGGGTAA
CCCAATATCGACTACCGGTTCACTCCTACTAGTTTCAGTGTAATGGGCTG
TTGCCTGAGCGCCTCCAATAGTACTACGGCCACGTTCTTAAAATTTAAAA
TGTATGGGGGGGGGGGTGAATGGTCTCAACTCCCAGGTACCATTGTACCA
TTTACAAGCACATCTTGCATCGTGGGCAACATTCTCGCGTATTGCTCCAT
CTGCGAAAGATGGATTGGCGTGTGTGTGTGTGTGGTACAATATTCTTCAC
GATAGCCCACTTTTAGCTGTTCCCACTACAGACCTCCTTGTGAGCACAGC
CGATTGTGTCATTGCAGAGGGGAAAGCCCCACCAGTCCACGTTACATACG
AAACGAACACTGAAGTTGTACTCGTATTGTATAGTGTTTCGCGTCATCGG
CGGTAAGTTGTCTTGCGCTGCCCTCAGTGGCCCGGAAACAAGTACAGCAT
CGCCCCCCCCCCCCTCGACCGCGCCAACGACCTGTCAGATCATGCTAGCT
AACGGAGAGCCATCGCTGGCGCTCCTCCCCACGAGATTCCGCAAGCTGAT
CTGGGTGAAGCGGGGGGACTACCTCATCACTTCCACGTCGGCGGGGGACT
TCGAAACAAGCGCAGGGGAGACGGGGAAAGTGAGTGCTAGTACACCCCCT
TGCCTCCCCTTCACCTGTCCCGTTTTAACTAATACTTGCGTGACCTGCGA
CCTCTCAAGGGGGTTCTTGTTGCGGTGTTTTCGGGCACGAACAAGTTGCT
AGGTGCTAGCCAGAAAGCAGCGTGTTGTGTCTGTGGCATGGTAAAAAGGC
GGCGGCGTTGGTCCGCTTGGACGGTTTTTGTTTGGGTGCGAGTGCCGGGT
TGAAGGTGTCAAACGGGTCCCTCTTGTGTGTTCCAACGGAGAGTCCGTGG
TAGAAAACGGGCGACATCGTCGAATCGAGTGCAGGATGCGGAGAGCACTG
GTTTGGTACAACAGCGACACCTTGCCTTGCCTGATGCTTTACGTGACGGA
TAGGGACGCCACGCCTGCGACGTTCCCTGCGAGTCAACGCCCTAGGAAAG
AAGAATGCGAAATAAAGCAGTGCTCGGGAGAAGTTACCCTCCGTACTTGA
CACGGCACCGTACGCCGCACGTTCTCACGTGGCCTGGCTGTTTTGTGCAC
CGCCGCTGCTCTGCTTGCATCCACGCCGATTGCCGCAGGTGAGACATCGT
GTGGAACACATCCTCAACAAGGACCAAATAAAGCACCTCAAGAAACAGGA
GCTCTGGCCGGCGGACGATGCTTTCGGCGGGGCTCGGCTTGCTGCAGGGG
CGGGGTCGAGCTGCCCTAGAGACGGCTGGGGGGACGCGGTGGCCGGCGGT
GGCGGGAGCAGTGATGACGGTGGTGGTAAAGGGATGGGTGCCGCCGCGAT
AGAGGGAAAAAGCGATGGTGGGGGGGAGGTCGCGGCAGCGGCAACGACCG
CAGAAAAGGACGTCGGTTCCGGTGTCAAGGTTGGCGTGGATGGGGCAGCA
GGAGAGATCACGAGCGGGGCTTTGCGTAGTGAAGGTGGGGGTGACGAGGA
AGAGGAGGAGGAAGAGGAGGAGGAGGATGACATGAGCGATTTGTTCGTGA
ACAACAACAGGGCGGCTATGATGCAGCTGCGGGTGGACCACGAAGACGAC
GAGGAAGACTCGGATTCGGATTCGGATTCGGATGAGGAATGAGGAAAAAA
ACGTTTTCCATTGTGAGTCTCGTCGCTCTTTGGCTTTTGATGAAGCCACG
CAGGGTCTTGCAATCAGATGTCCCCCTTCAGAATTGCGGTGGCTTATCGG
TGTGATGTGTGATGGCCTTGACGGGAAAACAACGCACGGTGCCCTGTTTG
TGCCCATGATTGAAGAGCAGCGGACAAGGAGCTTTGCAAATTCGTGTTTG
GGCTCCGATGCGGTGCTCTTGATGGGCGATCTCCGCATATCGGACGAAAC
GGTTTTTCCAGTGGGTGCTTGCACGGTAGTGGCCCCTGCCCCATGCGAGC
CCATCGCTAAGTACTGAGGCGAAGGTTACCTCGAACTCACCTATTGTAGG
AAAATCAGTCGCTTCATCACGGTTCATCGAGAAATGGATCAACGCCCACC
CTCCGCTGCCCCTCACCGTAAGTCGTACCGGTTGGTATTTTTCCATCCGT
GGGGGGTAGGCAAATATGATGACTGCTG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1309:10510..13837+

>mRNA_E-fasciculatus_F_contig1309.2338.1 ID=mRNA_E-fasciculatus_F_contig1309.2338.1|Name=mRNA_E-fasciculatus_F_contig1309.2338.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1554bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1309:10510..13837+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGGGGGTCGGGCGAAGGACGCTCTACCGCAAGTCGGTCACGGACGA
CTACCTCAACAGCACGCCCGAGCCGGGAGAGAACGAAGAGATCGCGCTGG
CGCAAGCTCCCCGAGGCTCGAACATCATCGAGATGGCGGGGGTCGGGCGA
AGGACGCTCTACCGCAAGTCGGTCACGGACGACTACCTCAACAGCACGCC
CGAGCCGGGAGAGAACGAAGAGATCGCGCTGGCGCAAGCTCCCCGAGGCT
CGAACATCATCGAGATCATGCTAGCTAACGGAGAGCCATCGCTGGCGCTC
CTCCCCACGAGATTCCGCAAGCTGATCTGGGTGAAGCGGGGGGACTACCT
CATCACTTCCACGTCGGCGGGGGACTTCGAAACAAGCGCAGGGGAGACGG
GGAAAATCATGCTAGCTAACGGAGAGCCATCGCTGGCGCTCCTCCCCACG
AGATTCCGCAAGCTGATCTGGGTGAAGCGGGGGGACTACCTCATCACTTC
CACGTCGGCGGGGGACTTCGAAACAAGCGCAGGGGAGACGGGGAAAGTGA
GACATCGTGTGGAACACATCCTCAACAAGGACCAAATAAAGCACCTCAAG
AAACAGGAGCTCTGGCCGGCGGACGATGCTTTCGGCGGGGCTCGGCTTGC
TGCAGGGGCGGGGTCGAGCTGCCCTAGAGACGGCTGGGGGGACGCGGTGG
CCGGCGGTGGCGGGAGCAGTGATGACGGTGGTGGTAAAGGGATGGGTGCC
GCCGCGATAGAGGGAAAAAGCGATGGTGGGGGGGAGGTCGCGGCAGCGGC
AACGACCGCAGAAAAGGACGTCGGTTCCGGTGTCAAGGTTGGCGTGGATG
GGGCAGCAGGAGAGATCACGAGCGGGGCTTTGCGTAGTGAAGGTGGGGGT
GACGAGGAAGAGGAGGAGGAAGAGGAGGAGGAGGATGACATGAGCGATTT
GTTCGTGAACAACAACAGGGCGGCTATGATGCAGCTGCGGGTGGACCACG
AAGACGACGAGGAAGACTCGGATTCGGATTCGGATTCGGATGAGGAATGA
GTGAGACATCGTGTGGAACACATCCTCAACAAGGACCAAATAAAGCACCT
CAAGAAACAGGAGCTCTGGCCGGCGGACGATGCTTTCGGCGGGGCTCGGC
TTGCTGCAGGGGCGGGGTCGAGCTGCCCTAGAGACGGCTGGGGGGACGCG
GTGGCCGGCGGTGGCGGGAGCAGTGATGACGGTGGTGGTAAAGGGATGGG
TGCCGCCGCGATAGAGGGAAAAAGCGATGGTGGGGGGGAGGTCGCGGCAG
CGGCAACGACCGCAGAAAAGGACGTCGGTTCCGGTGTCAAGGTTGGCGTG
GATGGGGCAGCAGGAGAGATCACGAGCGGGGCTTTGCGTAGTGAAGGTGG
GGGTGACGAGGAAGAGGAGGAGGAAGAGGAGGAGGAGGATGACATGAGCG
ATTTGTTCGTGAACAACAACAGGGCGGCTATGATGCAGCTGCGGGTGGAC
CACGAAGACGACGAGGAAGACTCGGATTCGGATTCGGATTCGGATGAGGA
ATGA
back to top