mRNA_E-fasciculatus_F_contig12980.2256.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12980.2256.1
Unique NamemRNA_E-fasciculatus_F_contig12980.2256.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12980.2256.1 vs. uniprot
Match: A0A6H5K8V0_9PHAE (MutS_I domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8V0_9PHAE)

HSP 1 Score: 233 bits (594), Expect = 5.670e-65
Identity = 261/393 (66.41%), Postives = 273/393 (69.47%), Query Frame = 1
Query:  724 MAVIEEEAAQATAEVAAEAMTQLPQGEESLGGKSLGGKVKGSENPLSDATATGRKEEAKNGGGVTGAPEGGAXXXXXXXXXXXXXXXXXXXXXXXXXRAAAASADLRHPHELDFRDLEEIPESTGPSFWGDDDDATLASTWATTAELEXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----TAPTVSDHGGAVGESSPPKHTGLAEEGVGADATAGAAAGESEPSPGNGIPPGNDESAPVVPSPTSAPATSGSTTTTIKMSRAAAGM-ASVGGEAKAGVAGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-EGGEGATSVAADITAFLPGKAASEGPPVVLASPETGXXXXXGSNGSGQREGGAANGMGG 1881
            MAVIEEEAAQATA+VAAEA+TQ  +G ES GGK +      SENPLS ATA  RKE+AKNG GVTGAPEGG                          RAAAA+AD R+  ELDFRDLEEIPESTGPSFWGDD                XXXXXXXXXXXXXXXXXXXXXXXXXXXX     TAPTV   G AVGESSPPK+TGLAE G GAD TAGAA GESEP PGNGIPPGNDESA VVPSPTSAPA                   ASVGGEAKAGV   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      A E  EG  SVAAD+ A +P KAASEGPP+ LASPET      G +GSGQREGG ANGMGG
Sbjct:    1 MAVIEEEAAQATAKVAAEAVTQPTRGAESRGGKGIV-----SENPLSGATAKSRKEKAKNGEGVTGAPEGGEEIPAAAAVAQAKAAADTAGVAEAAPRAAAATADFRYQDELDFRDLEEIPESTGPSFWGDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVATTAPTVPYRGRAVGESSPPKYTGLAEGGPGADVTAGAAGGESEPGPGNGIPPGNDESALVVPSPTSAPAXXXXXXXXXXXXXXXXXXXASVGGEAKAGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPPSHVAAERVEGGASVAADVAA-MPSKAASEGPPLALASPETAGGAAAGLDGSGQREGGEANGMGG 387          
BLAST of mRNA_E-fasciculatus_F_contig12980.2256.1 vs. uniprot
Match: D7G3V0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3V0_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 3.400e-14
Identity = 98/133 (73.68%), Postives = 102/133 (76.69%), Query Frame = 1
Query: 1486 MSRAAAGMASVGGEAKAGVAGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-EGGEGATSVAADITAFLPGKAASEGPPVVLASPETGXXXXXGSNGSGQREGGAANGMGG 1881
            MSRAAAGMASVGGEAKAGVAGR XXXXXXXXXXXXXXXXXXXXXXXXXX               XXXXXX  A EGGEGATSV AD+ A +PGKAASEGPP+ LASPET      G +GSGQREGG ANGMGG
Sbjct:    1 MSRAAAGMASVGGEAKAGVAGRRXXXXXXXXXXXXXXXXXXXXXXXXXXAVGTGTSGSNPPVAAXXXXXXLVAAEGGEGATSVTADVAA-MPGKAASEGPPLALASPETVGGAAAGLDGSGQREGGGANGMGG 132          
BLAST of mRNA_E-fasciculatus_F_contig12980.2256.1 vs. uniprot
Match: A0A1G3A6P0_9BACT (AP2/ERF domain-containing protein n=1 Tax=Planctomycetes bacterium RBG_16_55_9 TaxID=1801968 RepID=A0A1G3A6P0_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 1.200e-5
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 1
Query:  346 ASTRYIPSDFRGVW-GGPKGKWKARLVSKGQLKQLGTFESERDAARAYNKAARSLHGAGAKLNL 534
            A  R   S ++GVW    KG W+A +V  G+ + LG F  +RDAARAY++AA+  HG  A LN 
Sbjct:   43 ARKRNPRSGYKGVWLAKDKGLWRAAIVHHGKREHLGYFNDKRDAARAYDQAAKKYHGRFAALNF 106          
BLAST of mRNA_E-fasciculatus_F_contig12980.2256.1 vs. uniprot
Match: A0A0S8KRZ4_9BACT (AP2/ERF domain-containing protein n=1 Tax=Phycisphaerae bacterium SM1_79 TaxID=1703410 RepID=A0A0S8KRZ4_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 1.350e-5
Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = 1
Query:  328 NKRRRRASTRYIPSDFRGV-WGGPKGKWKARLVSKGQLKQLGTFESERDAARAYNKAARSLHGAGAKLNL 534
            N+ R++   R   S F+GV W   K KW  R+      K +G F+ E +AA+AY++AA+  HGA A LN 
Sbjct:   38 NRNRQKCQKRRCSSRFKGVSWNRSKEKWSVRINFNAMQKNIGYFDDETEAAKAYDRAAKKYHGAFAVLNF 107          
BLAST of mRNA_E-fasciculatus_F_contig12980.2256.1 vs. uniprot
Match: A0A2K3CQW4_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3CQW4_CHLRE)

HSP 1 Score: 60.1 bits (144), Expect = 1.350e-5
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 1
Query:  367 SDFRGV-WGGPKGKWKARLVSKGQLKQLGTFESERDAARAYNKAARSLHGAGAKLNL 534
            S +RGV W   KGKW A++   G+   LG F+++ +AARAY+ AAR LHGA AKLN 
Sbjct:  104 SSYRGVTWHKGKGKWMAKIRDAGKTVHLGYFDNQEEAARAYDAAARRLHGAAAKLNF 160          
BLAST of mRNA_E-fasciculatus_F_contig12980.2256.1 vs. uniprot
Match: UPI001BB36FB6 (HNH endonuclease n=1 Tax=Paenibacillus albilobatus TaxID=2716884 RepID=UPI001BB36FB6)

HSP 1 Score: 55.8 bits (133), Expect = 1.620e-5
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 1
Query:  328 NKRRRRASTRYIPSDFRGV-WGGPKGKWKARLVSKGQLKQLGTFESERDAARAYNKAARSLHGAGAKLNLL 537
            NK   R ST    S ++GV W   + KW ++++  G+ + +G FESER+AA AYNKAA+ L G  AKLN++
Sbjct:   93 NKSPHRKST----SKYKGVYWYKARSKWCSKIMLDGRYRHIGYFESEREAALAYNKAAKELFGDCAKLNVV 159          
BLAST of mRNA_E-fasciculatus_F_contig12980.2256.1 vs. uniprot
Match: A0A8J9RXU9_9CHLO (Probable AP2-like ethylene-responsive transcription factor PLT2 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RXU9_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 1.970e-5
Identity = 43/96 (44.79%), Postives = 51/96 (53.12%), Query Frame = 1
Query:  307 GPAGDRVNKRRRRASTRYIPSDFRGVWGGPKGKWKARLVSKGQLKQLGTFESERDAARAYNKAARSLHGAGAKLNLLPDEVPATAPQEAAPETTAE 594
            G A ++  KRRR +S       FRGV     GKWKA + +    K LG FE E DAARAY+ AA  L G  A  N   D+V A  PQ AA +  AE
Sbjct:  162 GTAEEQAKKRRRTSS-------FRGVTRAG-GKWKAAIRANNVKKDLGVFEDELDAARAYDAAAVQLLGPAAVTNFNKDDVMAALPQAAAEQVAAE 249          
BLAST of mRNA_E-fasciculatus_F_contig12980.2256.1 vs. uniprot
Match: A0A328AC93_9CAUL (Endonuclease n=1 Tax=Phenylobacterium deserti TaxID=1914756 RepID=A0A328AC93_9CAUL)

HSP 1 Score: 55.1 bits (131), Expect = 3.170e-5
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 1
Query:  400 GKWKARLVSKGQLKQLGTFESERDAARAYNKAARSLHGAGAKLNLLPDE 546
            G+W+A +V  G+   LGTF +E DAA AY+KAAR LHGA A+LN  PDE
Sbjct:  113 GRWQAVIVCDGRRHYLGTFGAELDAALAYDKAARELHGAFARLNF-PDE 160          
BLAST of mRNA_E-fasciculatus_F_contig12980.2256.1 vs. uniprot
Match: A0A835VXR6_CHLIN (Uncharacterized protein n=2 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835VXR6_CHLIN)

HSP 1 Score: 58.5 bits (140), Expect = 4.050e-5
Identity = 31/60 (51.67%), Postives = 39/60 (65.00%), Query Frame = 1
Query:  367 SDFRGV-WGGPKGKWKARLVSKGQLKQLGTFESERDAARAYNKAARSLHGAGAKLNLLPD 543
            S FRGV W     KW+A++   G+   LG F+S+ DAARAY+ AAR +HGA AKLN   D
Sbjct:  103 SSFRGVCWNKNVRKWQAQIRDAGKTLVLGCFDSQEDAARAYDAAARRIHGAAAKLNFPGD 162          
BLAST of mRNA_E-fasciculatus_F_contig12980.2256.1 vs. uniprot
Match: A8JAT5_CHLRE (Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8JAT5_CHLRE)

HSP 1 Score: 53.1 bits (126), Expect = 6.380e-5
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 1
Query:  346 ASTRYIPSDFRGV-WGGPKGKWKARLVSKGQLKQLGTFESERDAARAYNKAARSLHGAGAKLNL 534
            AS + + S +RGV W     +W+A + S G+   LG+F SE DAARA++KAA  L G  AKLN 
Sbjct:   32 ASDKPVSSKYRGVCWNRKNKRWQAAINSGGKYVYLGSFLSEYDAARAFDKAAVKLRGLRAKLNF 95          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12980.2256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5K8V0_9PHAE5.670e-6566.41MutS_I domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G3V0_ECTSI3.400e-1473.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1G3A6P0_9BACT1.200e-545.31AP2/ERF domain-containing protein n=1 Tax=Planctom... [more]
A0A0S8KRZ4_9BACT1.350e-540.00AP2/ERF domain-containing protein n=1 Tax=Phycisph... [more]
A0A2K3CQW4_CHLRE1.350e-552.63Uncharacterized protein n=1 Tax=Chlamydomonas rein... [more]
UPI001BB36FB61.620e-545.07HNH endonuclease n=1 Tax=Paenibacillus albilobatus... [more]
A0A8J9RXU9_9CHLO1.970e-544.79Probable AP2-like ethylene-responsive transcriptio... [more]
A0A328AC93_9CAUL3.170e-559.18Endonuclease n=1 Tax=Phenylobacterium deserti TaxI... [more]
A0A835VXR6_CHLIN4.050e-551.67Uncharacterized protein n=2 Tax=Chlamydomonas ince... [more]
A8JAT5_CHLRE6.380e-546.88Predicted protein (Fragment) n=1 Tax=Chlamydomonas... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12980contigE-fasciculatus_F_contig12980:1376..3803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionAP2/ERF domain protein
Ec32 orthologEc-01_004370.1
Exons4
Model size1881
Cds size1881
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12980.2256.1prot_E-fasciculatus_F_contig12980.2256.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12980 1376..3803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927802.0376432-CDS-E-fasciculatus_F_contig12980:1375..15131622927802.0376432-CDS-E-fasciculatus_F_contig12980:1375..1513Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12980 1376..1513 +
1695995700.8917544-CDS-E-fasciculatus_F_contig12980:1375..15131695995700.8917544-CDS-E-fasciculatus_F_contig12980:1375..1513Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12980 1376..1513 +
1622927802.0550306-CDS-E-fasciculatus_F_contig12980:1552..18721622927802.0550306-CDS-E-fasciculatus_F_contig12980:1552..1872Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12980 1553..1872 +
1695995700.9007087-CDS-E-fasciculatus_F_contig12980:1552..18721695995700.9007087-CDS-E-fasciculatus_F_contig12980:1552..1872Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12980 1553..1872 +
1622927802.0686085-CDS-E-fasciculatus_F_contig12980:2218..25821622927802.0686085-CDS-E-fasciculatus_F_contig12980:2218..2582Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12980 2219..2582 +
1695995700.9101057-CDS-E-fasciculatus_F_contig12980:2218..25821695995700.9101057-CDS-E-fasciculatus_F_contig12980:2218..2582Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12980 2219..2582 +
1622927802.0825882-CDS-E-fasciculatus_F_contig12980:2744..38031622927802.0825882-CDS-E-fasciculatus_F_contig12980:2744..3803Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12980 2745..3803 +
1695995700.9303021-CDS-E-fasciculatus_F_contig12980:2744..38031695995700.9303021-CDS-E-fasciculatus_F_contig12980:2744..3803Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12980 2745..3803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12980.2256.1

>prot_E-fasciculatus_F_contig12980.2256.1 ID=prot_E-fasciculatus_F_contig12980.2256.1|Name=mRNA_E-fasciculatus_F_contig12980.2256.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=627bp
MPRWTPLAVCCSYVSYWATTAAFPVVMPAATGVKRAVLGSAGGRKLQSTT
AALPLRLPLLPSARPAARRVFQQRMMSSSTSQQQQQQQVSTPSPDPAAAA
PPGPAGDRVNKRRRRASTRYIPSDFRGVWGGPKGKWKARLVSKGQLKQLG
TFESERDAARAYNKAARSLHGAGAKLNLLPDEVPATAPQEAAPETTAEAE
APVADPASAAEALAAEESAAAAAAAAAAAAAHAEREAVLAAMAVIEEEAA
QATAEVAAEAMTQLPQGEESLGGKSLGGKVKGSENPLSDATATGRKEEAK
NGGGVTGAPEGGAEKPAAAAATQAKAAAETAVVAEAAPRAAAASADLRHP
HELDFRDLEEIPESTGPSFWGDDDDATLASTWATTAELESGGGGDGGNAA
AASPVKEGSSSSSSVATTAPTVSDHGGAVGESSPPKHTGLAEEGVGADAT
AGAAAGESEPSPGNGIPPGNDESAPVVPSPTSAPATSGSTTTTIKMSRAA
AGMASVGGEAKAGVAGRRRRRSLSTLPSSQKAKSSPPPPPASAAVGAGTS
SPDPPVAAPPLPPSLVAAEGGEGATSVAADITAFLPGKAASEGPPVVLAS
PETGGGAAAGSNGSGQREGGAANGMGG
back to top

mRNA from alignment at E-fasciculatus_F_contig12980:1376..3803+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12980.2256.1 ID=mRNA_E-fasciculatus_F_contig12980.2256.1|Name=mRNA_E-fasciculatus_F_contig12980.2256.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2428bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12980:1376..3803+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCAAGGTGGACTCCTCTCGCCGTCTGCTGTTCGTATGTATCATACTG GGCCACGACAGCAGCATTTCCCGTCGTGATGCCGGCTGCAACTGGTGTAA AGCGGGCCGTGCTGGGGTCGGCCGGTGGTCGAAAGCTTGTCGACCTCTCA CGAGTTGCAGTCGGCACACAGCAGCAGCAGTCCACAACGGCAGCGCTGCC CCTGCGGCTGCCCCTGCTGCCCTCGGCGCGCCCCGCCGCTCGTCGGGTCT TTCAGCAGCGGATGATGTCGTCCTCGACCTCTCAGCAGCAGCAGCAGCAG CAGGTGTCGACTCCGTCACCGGACCCTGCAGCGGCTGCACCACCCGGCCC CGCCGGCGACAGGGTCAACAAGCGGCGACGGCGGGCATCGACGCGCTACA TCCCGTCCGATTTCCGAGGCGTCTGGGGAGGCCCCAAGGGCAAGTGGAAG GCTCGACTCGTGTCCAAGGGACAGCTGAAACAGCTGGGAACCTTCGAGTG AGAAAAAAACTGTATGCTGTTTTTACCAACTCTATTCAAACTGCTGTGCT GCTGTATTACTGTGCCATGTATTTTGGCCCTGTAGAACAGCCCTTTGTCA TGTACTATGCATAGATCTACTGCAGATCTACTGCAGGTTTGAATTGTGGC AGCCGCGAAACGGGAATGGACAAGCAGTAGACCGGGTTGGTTGTCTGCGG TGGGTGTTTCTACGTCTGCTCGTGGCATGTCGTTGGCGCCTTGGATGACC TACGGCAGTTTGTCTCGTTCGCTCTCCTAGCAAGTCCAACATCAACACAT TGTTGCCTTTTGTTTTGACTACTGCTGCGATCGAGCTGCCCAGGAGCGAG CGGGATGCTGCTCGGGCCTACAACAAAGCGGCACGATCTCTGCACGGCGC CGGCGCAAAGTTGAACTTGCTCCCCGACGAAGTGCCGGCGACGGCTCCGC AAGAGGCGGCGCCGGAGACAACAGCTGAGGCAGAAGCACCAGTAGCCGAC CCAGCGTCAGCAGCGGAAGCGTTAGCAGCGGAAGAGTCGGCGGCGGCAGC AGCAGCAGCAGCAGCAGCAGCAGCAGCGCATGCGGAACGCGAAGCCGTAT TAGCGGCGATGGCGGTTATCGAAGAAGAAGCAGCGCAGGCCACGGCAGAG GTAGCGGCGGAGGCAATGACACAACTGCCTCAAGGGGAAGAGAGCCTCGG GGGGAAGGTAAAAGGCTCCGAGAAACCTCTCTCCGGTGCTACCTCCACAA GCAGGAAGGAGGAGGCTAAGAACGGCAGGGGTGTCACCGGCGCTCCCGAG GGAGGAGCGGAAAAGCCCGCCGCTGCAGCCGTCATGGGGGCAGTGACACA ACTGCCTCAAGGGGCAGAGAGCCTCGGGGGGAAGGTAAAAGGCTCCGAGA ACCCTCTCTCCGACGCTACCGCCACAGGCAGGAAGGAGGAGGCTAAGAAC GGCGGGGGTGTCACCGGCGCTCCCGAGGGAGGAGCGGAAAAGCCCGCCGC CGCAGCCGCCACACAAGCGAAGGCAGCAGCAGAAACGGCGGTGGTGGCGG AAGCGGCCCCCCGTGCTGCCGCCGCCAGCGCTGACTTGCGCCACCCGCAC GAGCTCGATTTTCGGGACCTGGAGGAGATCCCGGAAAGCACCGGGCCGTC CTTCTGGGGGGACGACGACGACGCCACGCTGGCATCGACGTGGGCAACAA CGGCCGAGCTCGAAAGCGGAGGCGGCGGTGATGGTGGCAACGCTGCTGCT GCTTCTCCTGTCAAAGAGGGGAGCAGTAGCAGCAGCAGCGTCGCCACAAC AGCCCCGACCGTTTCTGACCATGGCGGAGCTGTCGGCGAGTCGAGCCCTC CGAAGCACACCGGGCTTGCAGAGGAAGGAGTGGGTGCAGACGCGACGGCG GGAGCAGCGGCAGGGGAATCGGAGCCTAGTCCTGGCAACGGCATCCCTCC GGGGAACGACGAGAGCGCACCGGTGGTCCCCTCACCCACTTCCGCACCAG CTACTAGCGGTAGTACCACCACCACGATCAAGATGTCGCGCGCGGCGGCA GGGATGGCTTCCGTCGGCGGCGAGGCCAAGGCAGGAGTTGCTGGCCGTCG GAGGCGTCGTTCGTTGTCGACGTTACCATCGTCGCAGAAGGCGAAGTCGT CGCCACCGCCTCCACCTGCCTCTGCCGCAGTCGGCGCCGGCACGTCGAGC CCAGACCCACCAGTAGCAGCGCCGCCACTACCGCCGAGCCTCGTGGCTGC CGAAGGCGGAGAGGGGGCCACAAGCGTTGCCGCTGATATTACTGCCTTCT TGCCCGGCAAGGCGGCCTCAGAAGGACCGCCAGTGGTGCTGGCGTCACCG GAGACGGGGGGCGGGGCGGCAGCGGGGTCGAACGGTTCTGGTCAACGGGA GGGGGGAGCCGCGAACGGCATGGGGGGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12980:1376..3803+

>mRNA_E-fasciculatus_F_contig12980.2256.1 ID=mRNA_E-fasciculatus_F_contig12980.2256.1|Name=mRNA_E-fasciculatus_F_contig12980.2256.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3762bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12980:1376..3803+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCAAGGTGGACTCCTCTCGCCGTCTGCTGTTCGTATGTATCATACTG
GGCCACGACAGCAGCATTTCCCGTCGTGATGCCGGCTGCAACTGGTGTAA
AGCGGGCCGTGCTGGGGTCGGCCGGTGGTCGAAAGCTTATGCCAAGGTGG
ACTCCTCTCGCCGTCTGCTGTTCGTATGTATCATACTGGGCCACGACAGC
AGCATTTCCCGTCGTGATGCCGGCTGCAACTGGTGTAAAGCGGGCCGTGC
TGGGGTCGGCCGGTGGTCGAAAGCTTCAGTCCACAACGGCAGCGCTGCCC
CTGCGGCTGCCCCTGCTGCCCTCGGCGCGCCCCGCCGCTCGTCGGGTCTT
TCAGCAGCGGATGATGTCGTCCTCGACCTCTCAGCAGCAGCAGCAGCAGC
AGGTGTCGACTCCGTCACCGGACCCTGCAGCGGCTGCACCACCCGGCCCC
GCCGGCGACAGGGTCAACAAGCGGCGACGGCGGGCATCGACGCGCTACAT
CCCGTCCGATTTCCGAGGCGTCTGGGGAGGCCCCAAGGGCAAGTGGAAGG
CTCGACTCGTGTCCAAGGGACAGCTGAAACAGCTGGGAACCTTCGACAGT
CCACAACGGCAGCGCTGCCCCTGCGGCTGCCCCTGCTGCCCTCGGCGCGC
CCCGCCGCTCGTCGGGTCTTTCAGCAGCGGATGATGTCGTCCTCGACCTC
TCAGCAGCAGCAGCAGCAGCAGGTGTCGACTCCGTCACCGGACCCTGCAG
CGGCTGCACCACCCGGCCCCGCCGGCGACAGGGTCAACAAGCGGCGACGG
CGGGCATCGACGCGCTACATCCCGTCCGATTTCCGAGGCGTCTGGGGAGG
CCCCAAGGGCAAGTGGAAGGCTCGACTCGTGTCCAAGGGACAGCTGAAAC
AGCTGGGAACCTTCGAGAGCGAGCGGGATGCTGCTCGGGCCTACAACAAA
GCGGCACGATCTCTGCACGGCGCCGGCGCAAAGTTGAACTTGCTCCCCGA
CGAAGTGCCGGCGACGGCTCCGCAAGAGGCGGCGCCGGAGACAACAGCTG
AGGCAGAAGCACCAGTAGCCGACCCAGCGTCAGCAGCGGAAGCGTTAGCA
GCGGAAGAGTCGGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
GCATGCGGAACGCGAAGCCGTATTAGCGGCGATGGCGGTTATCGAAGAAG
AAGCAGCGCAGGCCACGGCAGAGGTAGCGGCGGAGGCAATGACACAACTG
CCTCAAGGGGAAGAGAGCCTCGGGGGGAAGGAGCGAGCGGGATGCTGCTC
GGGCCTACAACAAAGCGGCACGATCTCTGCACGGCGCCGGCGCAAAGTTG
AACTTGCTCCCCGACGAAGTGCCGGCGACGGCTCCGCAAGAGGCGGCGCC
GGAGACAACAGCTGAGGCAGAAGCACCAGTAGCCGACCCAGCGTCAGCAG
CGGAAGCGTTAGCAGCGGAAGAGTCGGCGGCGGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCGCATGCGGAACGCGAAGCCGTATTAGCGGCGATGGC
GGTTATCGAAGAAGAAGCAGCGCAGGCCACGGCAGAGGTAGCGGCGGAGG
CAATGACACAACTGCCTCAAGGGGAAGAGAGCCTCGGGGGGAAGAGCCTC
GGGGGGAAGGTAAAAGGCTCCGAGAACCCTCTCTCCGACGCTACCGCCAC
AGGCAGGAAGGAGGAGGCTAAGAACGGCGGGGGTGTCACCGGCGCTCCCG
AGGGAGGAGCGGAAAAGCCCGCCGCCGCAGCCGCCACACAAGCGAAGGCA
GCAGCAGAAACGGCGGTGGTGGCGGAAGCGGCCCCCCGTGCTGCCGCCGC
CAGCGCTGACTTGCGCCACCCGCACGAGCTCGATTTTCGGGACCTGGAGG
AGATCCCGGAAAGCACCGGGCCGTCCTTCTGGGGGGACGACGACGACGCC
ACGCTGGCATCGACGTGGGCAACAACGGCCGAGCTCGAAAGCGGAGGCGG
CGGTGATGGTGGCAACGCTGCTGCTGCTTCTCCTGTCAAAGAGGGGAGCA
GTAGCAGCAGCAGCGTCGCCACAACAGCCCCGACCGTTTCTGACCATGGC
GGAGCTGTCGGCGAGTCGAGCCCTCCGAAGCACACCGGGCTTGCAGAGGA
AGGAGTGGGTGCAGACGCGACGGCGGGAGCAGCGGCAGGGGAATCGGAGC
CTAGTCCTGGCAACGGCATCCCTCCGGGGAACGACGAGAGCGCACCGGTG
GTCCCCTCACCCACTTCCGCACCAGCTACTAGCGGTAGTACCACCACCAC
GATCAAGATGTCGCGCGCGGCGGCAGGGATGGCTTCCGTCGGCGGCGAGG
CCAAGGCAGGAGTTGCTGGCCGTCGGAGGCGTCGTTCGTTGTCGACGTTA
CCATCGTCGCAGAAGGCGAAGTCGTCGCCACCGCCTCCACCTGCCTCTGC
CGCAGTCGGCGCCGGCACGTCGAGCCCAGACCCACCAGTAGCAGCGCCGC
CACTACCGCCGAGCCTCGTGGCTGCCGAAGGCGGAGAGGGGGCCACAAGC
GTTGCCGCTGATATTACTGCCTTCTTGCCCGGCAAGGCGGCCTCAGAAGG
ACCGCCAGTGGTGCTGGCGTCACCGGAGACGGGGGGCGGGGCGGCAGCGG
GGTCGAACGGTTCTGGTCAACGGGAGGGGGGAGCCGCGAACGGCATGGGG
GGGAGCCTCGGGGGGAAGGTAAAAGGCTCCGAGAACCCTCTCTCCGACGC
TACCGCCACAGGCAGGAAGGAGGAGGCTAAGAACGGCGGGGGTGTCACCG
GCGCTCCCGAGGGAGGAGCGGAAAAGCCCGCCGCCGCAGCCGCCACACAA
GCGAAGGCAGCAGCAGAAACGGCGGTGGTGGCGGAAGCGGCCCCCCGTGC
TGCCGCCGCCAGCGCTGACTTGCGCCACCCGCACGAGCTCGATTTTCGGG
ACCTGGAGGAGATCCCGGAAAGCACCGGGCCGTCCTTCTGGGGGGACGAC
GACGACGCCACGCTGGCATCGACGTGGGCAACAACGGCCGAGCTCGAAAG
CGGAGGCGGCGGTGATGGTGGCAACGCTGCTGCTGCTTCTCCTGTCAAAG
AGGGGAGCAGTAGCAGCAGCAGCGTCGCCACAACAGCCCCGACCGTTTCT
GACCATGGCGGAGCTGTCGGCGAGTCGAGCCCTCCGAAGCACACCGGGCT
TGCAGAGGAAGGAGTGGGTGCAGACGCGACGGCGGGAGCAGCGGCAGGGG
AATCGGAGCCTAGTCCTGGCAACGGCATCCCTCCGGGGAACGACGAGAGC
GCACCGGTGGTCCCCTCACCCACTTCCGCACCAGCTACTAGCGGTAGTAC
CACCACCACGATCAAGATGTCGCGCGCGGCGGCAGGGATGGCTTCCGTCG
GCGGCGAGGCCAAGGCAGGAGTTGCTGGCCGTCGGAGGCGTCGTTCGTTG
TCGACGTTACCATCGTCGCAGAAGGCGAAGTCGTCGCCACCGCCTCCACC
TGCCTCTGCCGCAGTCGGCGCCGGCACGTCGAGCCCAGACCCACCAGTAG
CAGCGCCGCCACTACCGCCGAGCCTCGTGGCTGCCGAAGGCGGAGAGGGG
GCCACAAGCGTTGCCGCTGATATTACTGCCTTCTTGCCCGGCAAGGCGGC
CTCAGAAGGACCGCCAGTGGTGCTGGCGTCACCGGAGACGGGGGGCGGGG
CGGCAGCGGGGTCGAACGGTTCTGGTCAACGGGAGGGGGGAGCCGCGAAC
GGCATGGGGGGG
back to top