mRNA_E-fasciculatus_F_contig12980.2256.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12980.2256.1 vs. uniprot
Match: A0A6H5K8V0_9PHAE (MutS_I domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8V0_9PHAE) HSP 1 Score: 233 bits (594), Expect = 5.670e-65 Identity = 261/393 (66.41%), Postives = 273/393 (69.47%), Query Frame = 1
Query: 724 MAVIEEEAAQATAEVAAEAMTQLPQGEESLGGKSLGGKVKGSENPLSDATATGRKEEAKNGGGVTGAPEGGAXXXXXXXXXXXXXXXXXXXXXXXXXRAAAASADLRHPHELDFRDLEEIPESTGPSFWGDDDDATLASTWATTAELEXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----TAPTVSDHGGAVGESSPPKHTGLAEEGVGADATAGAAAGESEPSPGNGIPPGNDESAPVVPSPTSAPATSGSTTTTIKMSRAAAGM-ASVGGEAKAGVAGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-EGGEGATSVAADITAFLPGKAASEGPPVVLASPETGXXXXXGSNGSGQREGGAANGMGG 1881
MAVIEEEAAQATA+VAAEA+TQ +G ES GGK + SENPLS ATA RKE+AKNG GVTGAPEGG RAAAA+AD R+ ELDFRDLEEIPESTGPSFWGDD XXXXXXXXXXXXXXXXXXXXXXXXXXXX TAPTV G AVGESSPPK+TGLAE G GAD TAGAA GESEP PGNGIPPGNDESA VVPSPTSAPA ASVGGEAKAGV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A E EG SVAAD+ A +P KAASEGPP+ LASPET G +GSGQREGG ANGMGG
Sbjct: 1 MAVIEEEAAQATAKVAAEAVTQPTRGAESRGGKGIV-----SENPLSGATAKSRKEKAKNGEGVTGAPEGGEEIPAAAAVAQAKAAADTAGVAEAAPRAAAATADFRYQDELDFRDLEEIPESTGPSFWGDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVATTAPTVPYRGRAVGESSPPKYTGLAEGGPGADVTAGAAGGESEPGPGNGIPPGNDESALVVPSPTSAPAXXXXXXXXXXXXXXXXXXXASVGGEAKAGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPPSHVAAERVEGGASVAADVAA-MPSKAASEGPPLALASPETAGGAAAGLDGSGQREGGEANGMGG 387
BLAST of mRNA_E-fasciculatus_F_contig12980.2256.1 vs. uniprot
Match: D7G3V0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3V0_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 3.400e-14 Identity = 98/133 (73.68%), Postives = 102/133 (76.69%), Query Frame = 1
Query: 1486 MSRAAAGMASVGGEAKAGVAGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-EGGEGATSVAADITAFLPGKAASEGPPVVLASPETGXXXXXGSNGSGQREGGAANGMGG 1881
MSRAAAGMASVGGEAKAGVAGR XXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXX A EGGEGATSV AD+ A +PGKAASEGPP+ LASPET G +GSGQREGG ANGMGG
Sbjct: 1 MSRAAAGMASVGGEAKAGVAGRRXXXXXXXXXXXXXXXXXXXXXXXXXXAVGTGTSGSNPPVAAXXXXXXLVAAEGGEGATSVTADVAA-MPGKAASEGPPLALASPETVGGAAAGLDGSGQREGGGANGMGG 132
BLAST of mRNA_E-fasciculatus_F_contig12980.2256.1 vs. uniprot
Match: A0A1G3A6P0_9BACT (AP2/ERF domain-containing protein n=1 Tax=Planctomycetes bacterium RBG_16_55_9 TaxID=1801968 RepID=A0A1G3A6P0_9BACT) HSP 1 Score: 55.1 bits (131), Expect = 1.200e-5 Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 1
Query: 346 ASTRYIPSDFRGVW-GGPKGKWKARLVSKGQLKQLGTFESERDAARAYNKAARSLHGAGAKLNL 534
A R S ++GVW KG W+A +V G+ + LG F +RDAARAY++AA+ HG A LN
Sbjct: 43 ARKRNPRSGYKGVWLAKDKGLWRAAIVHHGKREHLGYFNDKRDAARAYDQAAKKYHGRFAALNF 106
BLAST of mRNA_E-fasciculatus_F_contig12980.2256.1 vs. uniprot
Match: A0A0S8KRZ4_9BACT (AP2/ERF domain-containing protein n=1 Tax=Phycisphaerae bacterium SM1_79 TaxID=1703410 RepID=A0A0S8KRZ4_9BACT) HSP 1 Score: 54.7 bits (130), Expect = 1.350e-5 Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = 1
Query: 328 NKRRRRASTRYIPSDFRGV-WGGPKGKWKARLVSKGQLKQLGTFESERDAARAYNKAARSLHGAGAKLNL 534
N+ R++ R S F+GV W K KW R+ K +G F+ E +AA+AY++AA+ HGA A LN
Sbjct: 38 NRNRQKCQKRRCSSRFKGVSWNRSKEKWSVRINFNAMQKNIGYFDDETEAAKAYDRAAKKYHGAFAVLNF 107
BLAST of mRNA_E-fasciculatus_F_contig12980.2256.1 vs. uniprot
Match: A0A2K3CQW4_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3CQW4_CHLRE) HSP 1 Score: 60.1 bits (144), Expect = 1.350e-5 Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 1
Query: 367 SDFRGV-WGGPKGKWKARLVSKGQLKQLGTFESERDAARAYNKAARSLHGAGAKLNL 534
S +RGV W KGKW A++ G+ LG F+++ +AARAY+ AAR LHGA AKLN
Sbjct: 104 SSYRGVTWHKGKGKWMAKIRDAGKTVHLGYFDNQEEAARAYDAAARRLHGAAAKLNF 160
BLAST of mRNA_E-fasciculatus_F_contig12980.2256.1 vs. uniprot
Match: UPI001BB36FB6 (HNH endonuclease n=1 Tax=Paenibacillus albilobatus TaxID=2716884 RepID=UPI001BB36FB6) HSP 1 Score: 55.8 bits (133), Expect = 1.620e-5 Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 1
Query: 328 NKRRRRASTRYIPSDFRGV-WGGPKGKWKARLVSKGQLKQLGTFESERDAARAYNKAARSLHGAGAKLNLL 537
NK R ST S ++GV W + KW ++++ G+ + +G FESER+AA AYNKAA+ L G AKLN++
Sbjct: 93 NKSPHRKST----SKYKGVYWYKARSKWCSKIMLDGRYRHIGYFESEREAALAYNKAAKELFGDCAKLNVV 159
BLAST of mRNA_E-fasciculatus_F_contig12980.2256.1 vs. uniprot
Match: A0A8J9RXU9_9CHLO (Probable AP2-like ethylene-responsive transcription factor PLT2 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RXU9_9CHLO) HSP 1 Score: 59.3 bits (142), Expect = 1.970e-5 Identity = 43/96 (44.79%), Postives = 51/96 (53.12%), Query Frame = 1
Query: 307 GPAGDRVNKRRRRASTRYIPSDFRGVWGGPKGKWKARLVSKGQLKQLGTFESERDAARAYNKAARSLHGAGAKLNLLPDEVPATAPQEAAPETTAE 594
G A ++ KRRR +S FRGV GKWKA + + K LG FE E DAARAY+ AA L G A N D+V A PQ AA + AE
Sbjct: 162 GTAEEQAKKRRRTSS-------FRGVTRAG-GKWKAAIRANNVKKDLGVFEDELDAARAYDAAAVQLLGPAAVTNFNKDDVMAALPQAAAEQVAAE 249
BLAST of mRNA_E-fasciculatus_F_contig12980.2256.1 vs. uniprot
Match: A0A328AC93_9CAUL (Endonuclease n=1 Tax=Phenylobacterium deserti TaxID=1914756 RepID=A0A328AC93_9CAUL) HSP 1 Score: 55.1 bits (131), Expect = 3.170e-5 Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 1
Query: 400 GKWKARLVSKGQLKQLGTFESERDAARAYNKAARSLHGAGAKLNLLPDE 546
G+W+A +V G+ LGTF +E DAA AY+KAAR LHGA A+LN PDE
Sbjct: 113 GRWQAVIVCDGRRHYLGTFGAELDAALAYDKAARELHGAFARLNF-PDE 160
BLAST of mRNA_E-fasciculatus_F_contig12980.2256.1 vs. uniprot
Match: A0A835VXR6_CHLIN (Uncharacterized protein n=2 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835VXR6_CHLIN) HSP 1 Score: 58.5 bits (140), Expect = 4.050e-5 Identity = 31/60 (51.67%), Postives = 39/60 (65.00%), Query Frame = 1
Query: 367 SDFRGV-WGGPKGKWKARLVSKGQLKQLGTFESERDAARAYNKAARSLHGAGAKLNLLPD 543
S FRGV W KW+A++ G+ LG F+S+ DAARAY+ AAR +HGA AKLN D
Sbjct: 103 SSFRGVCWNKNVRKWQAQIRDAGKTLVLGCFDSQEDAARAYDAAARRIHGAAAKLNFPGD 162
BLAST of mRNA_E-fasciculatus_F_contig12980.2256.1 vs. uniprot
Match: A8JAT5_CHLRE (Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8JAT5_CHLRE) HSP 1 Score: 53.1 bits (126), Expect = 6.380e-5 Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 1
Query: 346 ASTRYIPSDFRGV-WGGPKGKWKARLVSKGQLKQLGTFESERDAARAYNKAARSLHGAGAKLNL 534
AS + + S +RGV W +W+A + S G+ LG+F SE DAARA++KAA L G AKLN
Sbjct: 32 ASDKPVSSKYRGVCWNRKNKRWQAAINSGGKYVYLGSFLSEYDAARAFDKAAVKLRGLRAKLNF 95 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12980.2256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12980.2256.1 >prot_E-fasciculatus_F_contig12980.2256.1 ID=prot_E-fasciculatus_F_contig12980.2256.1|Name=mRNA_E-fasciculatus_F_contig12980.2256.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=627bp MPRWTPLAVCCSYVSYWATTAAFPVVMPAATGVKRAVLGSAGGRKLQSTTback to top mRNA from alignment at E-fasciculatus_F_contig12980:1376..3803+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12980.2256.1 ID=mRNA_E-fasciculatus_F_contig12980.2256.1|Name=mRNA_E-fasciculatus_F_contig12980.2256.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2428bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12980:1376..3803+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12980:1376..3803+ >mRNA_E-fasciculatus_F_contig12980.2256.1 ID=mRNA_E-fasciculatus_F_contig12980.2256.1|Name=mRNA_E-fasciculatus_F_contig12980.2256.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3762bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12980:1376..3803+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |