mRNA_E-fasciculatus_F_contig12970.2251.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12970.2251.1
Unique NamemRNA_E-fasciculatus_F_contig12970.2251.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12970.2251.1 vs. uniprot
Match: A0A6H5L1W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1W2_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 8.570e-40
Identity = 142/288 (49.31%), Postives = 156/288 (54.17%), Query Frame = 1 
Query:    7 GVAKKATQVPTTTKXXXXXXXXXXXXXXXXXXRLEPVARADAVELLRQAVAKYRGAQVSAASPSAPSVSSPLPRXXXXXXXXXXXXYTSTKSSATPSYSXXXSYASSTGGIVSGGGGYGGSDGTXXXXXXXXXXXXXXXXXXXXXXXXXXXSNRGGDTGKAKLTPGVPTPSASGDGARGGDPGSSTSSSIDSSGGQVEXXXXXXXXXXXXXXXXXXXAEEFAELAARCLGSALPEIALEA---HSLYVRAEASGLQPRTTALLPAYPLTADADDVVDADKDEDGHRRR 861
            G+AKK  Q PTT K                  RLEP+ARADAVELLRQAV KYRGAQVSAASP++ S       XXX    XXXXX             XXX               YGGSDGT                   XXXXXXXX + GG+TG ++L+   P P ASGDGA  GD  SST ++   +  +VE                   AEEFAELAARCLGSALPEIALEA   HSLYVRAEASGLQPRTTALLP YPLT D    VD   D+DGH RR
Sbjct:  171 GIAKKTAQAPTTAKTRKRKGRGWRGR------RLEPIARADAVELLRQAVVKYRGAQVSAASPTSSSXXXXXXXXXXPVASXXXXXXXXXXXXXXXXXXXXXXXXXXXA--------YGGSDGTSSYASISDGVVVIGRGVGSXXXXXXXXXSNGGETGTSRLSSSAPIPPASGDGANAGDTRSSTGNTNIDTSVRVESGSVGSGHDSTAVAAAAVAAEEFAELAARCLGSALPEIALEASVAHSLYVRAEASGLQPRTTALLPEYPLTTDD---VDTQDDDDGHWRR 441
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BLAST of mRNA_E-fasciculatus_F_contig12970.2251.1 vs. uniprot
Match: D8LKS9_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS9_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 9.720e-8
Identity = 36/46 (78.26%), Postives = 36/46 (78.26%), Query Frame = 2 
Query:  722 RRTPSTSAPKPRDCSPEPRRSSRPTLSPPTPTTLSTPTKTKTATGG 859
            RRTPSTSAPK RDCSPEPRRSSRPTLSPPT    STP    T TGG
Sbjct:    8 RRTPSTSAPKRRDCSPEPRRSSRPTLSPPT---TSTPKTMTTGTGG 50
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12970.2251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L1W2_9PHAE8.570e-4049.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKS9_ECTSI9.720e-878.26Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12970contigE-fasciculatus_F_contig12970:36..1286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size861
Cds size861
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927801.5447638-CDS-E-fasciculatus_F_contig12970:35..7581622927801.5447638-CDS-E-fasciculatus_F_contig12970:35..758Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12970 36..758 +
1695995700.6707911-CDS-E-fasciculatus_F_contig12970:35..7581695995700.6707911-CDS-E-fasciculatus_F_contig12970:35..758Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12970 36..758 +
1622927801.5564766-CDS-E-fasciculatus_F_contig12970:1148..12861622927801.5564766-CDS-E-fasciculatus_F_contig12970:1148..1286Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12970 1149..1286 +
1695995700.6843874-CDS-E-fasciculatus_F_contig12970:1148..12861695995700.6843874-CDS-E-fasciculatus_F_contig12970:1148..1286Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12970 1149..1286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12970.2251.1prot_E-fasciculatus_F_contig12970.2251.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12970 36..1286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12970.2251.1

>prot_E-fasciculatus_F_contig12970.2251.1 ID=prot_E-fasciculatus_F_contig12970.2251.1|Name=mRNA_E-fasciculatus_F_contig12970.2251.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=287bp
GGGVAKKATQVPTTTKRKQQQQQQQQRRGRGRRRRLEPVARADAVELLRQ
AVAKYRGAQVSAASPSAPSVSSPLPRPVPSPPPSPSPSYTSTKSSATPSY
SSTSSYASSTGGIVSGGGGYGGSDGTSNYASSSDGVVVIGGGFSSTSSTS
STSSNRGGDTGKAKLTPGVPTPSASGDGARGGDPGSSTSSSIDSSGGQVE
SGDIGSGDESTAVAAAAVAAEEFAELAARCLGSALPEIALEAHSLYVRAE
ASGLQPRTTALLPAYPLTADADDVVDADKDEDGHRRR
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mRNA from alignment at E-fasciculatus_F_contig12970:36..1286+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12970.2251.1 ID=mRNA_E-fasciculatus_F_contig12970.2251.1|Name=mRNA_E-fasciculatus_F_contig12970.2251.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1251bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12970:36..1286+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCGGCGGTGTGGCGAAGAAAGCAACGCAAGTGCCGACAACAACGAAGCG
AAAGCAGCAGCAGCAGCAGCAGCAGCAGCGACGGGGGCGGGGGCGGCGGC
GGCGTCTGGAGCCGGTCGCCCGAGCAGACGCGGTGGAGCTGTTGCGACAG
GCCGTGGCGAAGTACCGTGGGGCCCAGGTTTCGGCCGCATCCCCCTCTGC
CCCCTCCGTCTCGTCGCCCCTGCCGCGTCCAGTTCCCTCGCCCCCCCCCT
CGCCTTCCCCTTCCTACACCTCCACCAAGTCCTCTGCTACCCCTTCCTAC
TCCTCCACCAGCTCCTATGCTAGTAGCACTGGCGGCATCGTATCGGGTGG
GGGGGGCTACGGTGGCAGCGACGGGACTAGCAACTACGCTTCTAGTAGTG
ACGGCGTTGTTGTTATCGGTGGTGGTTTCAGCAGCACCAGCAGCACCAGC
AGCACCAGCAGCAATAGAGGCGGCGACACCGGGAAAGCTAAGCTAACGCC
GGGTGTGCCAACGCCCTCCGCTAGCGGTGATGGCGCTAGGGGCGGCGATC
CCGGAAGCAGCACTAGTAGCAGTATCGACAGCAGCGGCGGCCAGGTTGAG
AGTGGGGACATCGGAAGCGGCGACGAATCTACGGCGGTGGCTGCGGCAGC
CGTTGCTGCTGAGGAGTTCGCGGAGCTCGCAGCGCGGTGTCTGGGCTCGG
CACTCCCAGAGATAGCCCTAGAGGTGAGCTGGAGGCGTGTTTTCGTAACT
GCTGTGTGTCTGGAGGCGCGAGTCACGCGTGAGGGGGAGATAAAGGGACG
CTTCCCTGCACCTACGCCCAGGGTGGGTTTTAAGTAGAACACGCACCTAT
CGTCGGTCCGTGGAACTATTGGCGGGGGGGCATTGCAGGCGTTATACCCA
CGTCTCGGTGAAGCCCGTTGGTTTCCTCCTCCTCTCCGCCCCGCGATCCG
ATGCAGCAGAAGTTGTTCGCTCAACCCAGTTTTCAAGGGCGTGGCCCTCT
CAATTTCCACGTGTTTAATCTTCCCGCGTCATTTCGCTGCATACGCATAC
ACACCAAACACAATCCCGGATCACCAACAACAAAAAATGGACAACAAACC
GAAAAACACACAGGCGCACTCCCTCTACGTCCGCGCCGAAGCCTCGGGAC
TGCAGCCCCGAACCACGGCGCTCCTCCCGGCCTACCCTCTCACCGCCGAC
GCCGACGACGTTGTCGACGCCGACAAAGACGAAGACGGCCACCGGCGGCG
G
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12970:36..1286+

>mRNA_E-fasciculatus_F_contig12970.2251.1 ID=mRNA_E-fasciculatus_F_contig12970.2251.1|Name=mRNA_E-fasciculatus_F_contig12970.2251.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1722bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12970:36..1286+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCGGCGGTGTGGCGAAGAAAGCAACGCAAGTGCCGACAACAACGAAGCG
AAAGCAGCAGCAGCAGCAGCAGCAGCAGCGACGGGGGCGGGGGCGGCGGC
GGCGTCTGGAGCCGGTCGCCCGAGCAGACGCGGTGGAGCTGTTGCGACAG
GCCGTGGCGAAGTACCGTGGGGCCCAGGTTTCGGCCGCATCCCCCTCTGC
CCCCTCCGTCTCGTCGCCCCTGCCGCGTCCAGTTCCCTCGCCCCCCCCCT
CGCCTTCCCCTTCCTACACCTCCACCAAGTCCTCTGCTACCCCTTCCTAC
TCCTCCACCAGCTCCTATGCTAGTAGCACTGGCGGCATCGTATCGGGTGG
GGGGGGCTACGGTGGCAGCGACGGGACTAGCAACTACGCTTCTAGTAGTG
ACGGCGTTGTTGTTATCGGTGGTGGTTTCAGCAGCACCAGCAGCACCAGC
AGCACCAGCAGCAATAGAGGCGGCGACACCGGGAAAGCTAAGCTAACGCC
GGGTGTGCCAACGCCCTCCGCTAGCGGTGATGGCGCTAGGGGCGGCGATC
CCGGAAGCAGCACTAGTAGCAGTATCGACAGCAGCGGCGGCCAGGTTGAG
AGTGGGGACATCGGAAGCGGCGACGAATCTACGGCGGTGGCTGCGGCAGC
CGTTGCTGCTGAGGAGTTCGCGGAGCTCGCAGCGCGGTGTCTGGGCTCGG
CACTCCCAGAGATAGCCCTAGAGGGCGGCGGTGTGGCGAAGAAAGCAACG
CAAGTGCCGACAACAACGAAGCGAAAGCAGCAGCAGCAGCAGCAGCAGCA
GCGACGGGGGCGGGGGCGGCGGCGGCGTCTGGAGCCGGTCGCCCGAGCAG
ACGCGGTGGAGCTGTTGCGACAGGCCGTGGCGAAGTACCGTGGGGCCCAG
GTTTCGGCCGCATCCCCCTCTGCCCCCTCCGTCTCGTCGCCCCTGCCGCG
TCCAGTTCCCTCGCCCCCCCCCTCGCCTTCCCCTTCCTACACCTCCACCA
AGTCCTCTGCTACCCCTTCCTACTCCTCCACCAGCTCCTATGCTAGTAGC
ACTGGCGGCATCGTATCGGGTGGGGGGGGCTACGGTGGCAGCGACGGGAC
TAGCAACTACGCTTCTAGTAGTGACGGCGTTGTTGTTATCGGTGGTGGTT
TCAGCAGCACCAGCAGCACCAGCAGCACCAGCAGCAATAGAGGCGGCGAC
ACCGGGAAAGCTAAGCTAACGCCGGGTGTGCCAACGCCCTCCGCTAGCGG
TGATGGCGCTAGGGGCGGCGATCCCGGAAGCAGCACTAGTAGCAGTATCG
ACAGCAGCGGCGGCCAGGTTGAGAGTGGGGACATCGGAAGCGGCGACGAA
TCTACGGCGGTGGCTGCGGCAGCCGTTGCTGCTGAGGAGTTCGCGGAGCT
CGCAGCGCGGTGTCTGGGCTCGGCACTCCCAGAGATAGCCCTAGAGGCGC
ACTCCCTCTACGTCCGCGCCGAAGCCTCGGGACTGCAGCCCCGAACCACG
GCGCTCCTCCCGGCCTACCCTCTCACCGCCGACGCCGACGACGTTGTCGA
CGCCGACAAAGACGAAGACGGCCACCGGCGGCGGGCGCACTCCCTCTACG
TCCGCGCCGAAGCCTCGGGACTGCAGCCCCGAACCACGGCGCTCCTCCCG
GCCTACCCTCTCACCGCCGACGCCGACGACGTTGTCGACGCCGACAAAGA
CGAAGACGGCCACCGGCGGCGG
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