mRNA_E-fasciculatus_F_contig1208.1624.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1208.1624.1 vs. uniprot
Match: D7G779_ECTSI (L51_S25_CI-B8 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G779_ECTSI) HSP 1 Score: 262 bits (669), Expect = 1.430e-83 Identity = 124/129 (96.12%), Postives = 129/129 (100.00%), Query Frame = 1
Query: 40 MATRGVFQLRKLTLKYCEHSGSSKGAREFIRNRIVEFANNTPAAEVVTELRPGQHPYIMGDYVSGEVKTIGIKNIAPGEIMDYAMMLRNSSGHKVRKFKKPVESRYPSIQGVWDIEAPLHTTDIHVEHH 426
MATRGVFQLRKLTLKYC+HSGSSKGAREFIR+RIVEFANNTPAAEVVTELRPG+HPYIMGDYV+GEVKTIGIKNIAPGEIMDYAMMLRNSSGHKVRKFKKPVESRYPSIQGVWDI+APLHTTDIHVEHH
Sbjct: 1 MATRGVFQLRKLTLKYCDHSGSSKGAREFIRHRIVEFANNTPAAEVVTELRPGKHPYIMGDYVTGEVKTIGIKNIAPGEIMDYAMMLRNSSGHKVRKFKKPVESRYPSIQGVWDIDAPLHTTDIHVEHH 129
BLAST of mRNA_E-fasciculatus_F_contig1208.1624.1 vs. uniprot
Match: A0A835ZEX9_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEX9_9STRA) HSP 1 Score: 130 bits (328), Expect = 5.590e-33 Identity = 60/128 (46.88%), Postives = 82/128 (64.06%), Query Frame = 1
Query: 40 MATRGVFQLRKLTLKYCEHSGSSKGAREFIRNRIVEFANNTPAAEVVTELRPGQHPYIMGDYVSGEVKTIGIKNIAPGEIMDYAMMLRNSSGHKVRKFKKPVESRYPSIQGVWDIEAPLHTTDIHVEH 423
MATRGV QL+++ ++YC+ GSS+G R+FI +V FA P E++TE+R +HP I DY++G KT+G+KN AP I D+ LR ++G K R+F KPV SR PS+QG WD E V H
Sbjct: 1 MATRGVMQLQRIHIRYCDWGGSSQGMRDFIGRELVAFAKAVPHCEIITEVRRNRHPIIRADYLTGIPKTLGVKNEAPSAIRDFLHRLRTTTGRKQRRFDKPVVSRLPSVQGAWDPEVAYQAMRTTVRH 128
BLAST of mRNA_E-fasciculatus_F_contig1208.1624.1 vs. uniprot
Match: A0A024G7B8_9STRA (L51_S25_CI-B8 domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G7B8_9STRA) HSP 1 Score: 119 bits (298), Expect = 1.090e-28 Identity = 56/124 (45.16%), Postives = 84/124 (67.74%), Query Frame = 1
Query: 40 MATRGVFQLRKLTLKYCEHSGSSKGAREFIRNR-IVEFANNTPAAEVVTELRPGQHPYIMGDYVSGEVKTIGIKNIAPGEIMDYAMMLRNSSGHKVRKFKKPVESRYPSIQGVW--DIEAPLHT 402
MATRG++QL+++T++YC+HSGSS+ R+F+ N+ +EF P TEL+PG+HP ++GDYV+ + K +KN IM LR+SSG K+ K K+PV ++ PSIQG+W D++ P T
Sbjct: 1 MATRGIWQLKEVTIRYCQHSGSSRHVRDFLSNKQFLEFVKENPQVSFRTELKPGRHPVLIGDYVTNQQKVCDVKNKEQKVIMLQLQRLRDSSGRKMTKMKRPVITKCPSIQGIWQQDMQFPEFT 124
BLAST of mRNA_E-fasciculatus_F_contig1208.1624.1 vs. uniprot
Match: F0WUQ8_9STRA (Uncharacterized protein AlNc14C277G10065 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WUQ8_9STRA) HSP 1 Score: 119 bits (297), Expect = 1.520e-28 Identity = 56/124 (45.16%), Postives = 83/124 (66.94%), Query Frame = 1
Query: 40 MATRGVFQLRKLTLKYCEHSGSSKGAREFIRNR-IVEFANNTPAAEVVTELRPGQHPYIMGDYVSGEVKTIGIKNIAPGEIMDYAMMLRNSSGHKVRKFKKPVESRYPSIQGVW--DIEAPLHT 402
MATRG++QL++LT++YC+HSGSS+ R+F+ N+ ++F P TEL+PG+HP ++GDYV+ E K +KN IM LR+SSG K+ + K+P+ S+ PSIQG+W D+ P T
Sbjct: 1 MATRGIWQLKELTIRYCQHSGSSRYIRDFLNNKKFIDFVKENPQVAFRTELKPGRHPVLIGDYVTNEQKVCDVKNKEEKWIMLQLQRLRDSSGRKMTRMKRPIISKRPSIQGIWQQDMRFPEFT 124
BLAST of mRNA_E-fasciculatus_F_contig1208.1624.1 vs. uniprot
Match: A0A7S2W7Q4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W7Q4_9STRA) HSP 1 Score: 118 bits (296), Expect = 5.490e-28 Identity = 61/131 (46.56%), Postives = 78/131 (59.54%), Query Frame = 1
Query: 31 RIVMATRGVFQLRKLTLKYCEHSGSSKGAREFIRN-RIVEFANNTPAAEVVTELRPGQHPYIMGDYVSGEVKTIGIKNIAPGEIMDYAMMLRNSSGHKVRKFKKPVESRYPSIQGVWDIEAPLHTTDIHVE 420
+I+MATRGV QL+KL + YCEH GSS REFI + +IV FA P+ V+ +LR G HPYI G Y++G K I IKN I+ ML N+SG K+ K K + PSIQGVW + + VE
Sbjct: 28 KIIMATRGVKQLQKLRIVYCEHGGSSASIREFISSGKIVSFAEKNPSVTVIAQLRNGNHPYIKGQYLTGNSKQICIKNETVPRIVKVVHMLNNTSGRKITKLGKSTRTATPSIQGVWTPMLDISDSSFQVE 158
BLAST of mRNA_E-fasciculatus_F_contig1208.1624.1 vs. uniprot
Match: A0A7S1GKP3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GKP3_CYCTE) HSP 1 Score: 114 bits (285), Expect = 9.220e-27 Identity = 58/127 (45.67%), Postives = 80/127 (62.99%), Query Frame = 1
Query: 40 MATRGVFQLRKLTLKYCEHSGSSKGAREFIRN-RIVEFANNTPAAEVVTELRPGQHPYIMGDYVSGEVKTIGIKNIAPGEIMDYAMMLRNSSGHKVRKFKKPVESRYPSIQGVWDIEAPLHTTDIHV 417
MATRGV+QL +L L YCEH GSS+ R++I + RIV++A + P EV +R G+HP I G+Y++G+ K I +KN I ML NSSG K++K K+ V ++ PS+QGVW L T V
Sbjct: 1 MATRGVYQLARLRLVYCEHGGSSRTIRDYISSGRIVQWAKDHPHVEVEVHVRNGKHPLIEGEYLTGQPKQITVKNQTMERIQQVVDMLHNSSGRKIKKLKRTVVTQTPSVQGVWTPMLDLQNTKFTV 127
BLAST of mRNA_E-fasciculatus_F_contig1208.1624.1 vs. uniprot
Match: A0A7S3V4V6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V4V6_9STRA) HSP 1 Score: 114 bits (285), Expect = 1.200e-26 Identity = 58/117 (49.57%), Postives = 74/117 (63.25%), Query Frame = 1
Query: 31 RIVMATRGVFQLRKLTLKYCEHSGSSKGAREFIRNR-IVEFANNTPAAEVVTELRPGQHPYIMGDYVSGEVKTIGIKNIAPGEIMDYAMMLRNSSGHKVRKFKKPVESRYPSIQGVW 378
RI MATRGV QL KL + +CEH GSS RE+I+ IV+FA + P EV +LR G+HPYI +Y++G K + +KN I D ML NSSG K+ K PV + PS+QGVW
Sbjct: 9 RIKMATRGVKQLAKLRVVFCEHGGSSNLVREYIKTGGIVQFATDNPTVEVEAKLRNGKHPYIKAEYITGFSKQVCVKNEPLERIQDVMTMLNNSSGRKISKIGNPVRTDTPSVQGVW 125
BLAST of mRNA_E-fasciculatus_F_contig1208.1624.1 vs. uniprot
Match: A0A7S1CP68_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CP68_9STRA) HSP 1 Score: 114 bits (284), Expect = 1.360e-26 Identity = 54/114 (47.37%), Postives = 72/114 (63.16%), Query Frame = 1
Query: 40 MATRGVFQLRKLTLKYCEHSGSSKGAREFIRNRIVEFANNTPAAEVVTELRPGQHPYIMGDYVSGEVKTIGIKNIAPGEIMDYAMMLRNSSGHKVRKFKKPVESRYPSIQGVWD 381
M TRGV+QL++LTL+YC SGSS G REF+R+ +VEFA P V T +RP +HP +GDY++G K +KN + LR+ G KV++ PV S PS+QGVWD
Sbjct: 9 MCTRGVWQLKELTLRYCRSSGSSAGVREFMRDGLVEFARTNPQLTVRTVVRPNRHPNAIGDYLNGNTKVTDLKNKDAEAVGAVLQRLRDDGGRKVQRHHVPVRSSAPSVQGVWD 122
BLAST of mRNA_E-fasciculatus_F_contig1208.1624.1 vs. uniprot
Match: A0A8J9RFE5_9CHLO (Probable 54S ribosomal protein L51, mitochondrial n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RFE5_9CHLO) HSP 1 Score: 112 bits (281), Expect = 3.210e-26 Identity = 53/126 (42.06%), Postives = 82/126 (65.08%), Query Frame = 1
Query: 40 MATRGVFQLRKLTLKYCEHSGSSKGAREFIRNRIVEFANNTPAAEVVTELRPGQHPYIMGDYVSGEVKTIGIKNIAPGEIMDYAMMLRNSSGH------KVRKFKKPVESR-------YPSIQGVW 378
MA GV+QLRKLTL +C SGSS+GAR F+ + + F P +++ ELRPGQHPY+ +Y +G V+T+G+KN P E++ +A+MLR+++G KVR+ + +++ PS+QG+W
Sbjct: 1 MARLGVWQLRKLTLNFCSFSGSSRGARAFVEDFLPTFKQENPHLQIIEELRPGQHPYLKAEYRNGRVRTVGVKNELPNEVLRHAVMLRSAAGRATHVKVKVRQTQPAIKTEDGQHRRASPSVQGMW 126
BLAST of mRNA_E-fasciculatus_F_contig1208.1624.1 vs. uniprot
Match: UPI000900E4B3 (54S ribosomal protein L51, mitochondrial-like n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI000900E4B3) HSP 1 Score: 111 bits (277), Expect = 8.110e-26 Identity = 54/119 (45.38%), Postives = 73/119 (61.34%), Query Frame = 1
Query: 40 MATRGVFQLRKLTLKYCEHSGSSKGAREFIRNRIVEFANNTPAAEVVTELRPGQHPYIMGDYVSGEVKTIGIKNIAPGEIMDYAMMLRNSSGHKVRKFKKPVESRYPSIQGVWDIEAPL 396
MA RGV+QL+KL + YC GSSKG REFI + + F P EVVTEL GQHP++ G Y + + + ++N+ P EI+ A LRNS G KV K K +++PS+QG W E +
Sbjct: 1 MALRGVWQLQKLVVSYCNWGGSSKGLREFIESHLPAFKEVNPHLEVVTELNRGQHPFLKGLYKNKNERAVSVRNLNPEEILLEATRLRNSLGRKVVKMKTRHVTKHPSVQGTWSTELKM 119 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1208.1624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1208.1624.1 >prot_E-fasciculatus_F_contig1208.1624.1 ID=prot_E-fasciculatus_F_contig1208.1624.1|Name=mRNA_E-fasciculatus_F_contig1208.1624.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=131bp MATRGVFQLRKLTLKYCEHSGSSKGAREFIRNRIVEFANNTPAAEVVTELback to top mRNA from alignment at E-fasciculatus_F_contig1208:10508..13046- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1208.1624.1 ID=mRNA_E-fasciculatus_F_contig1208.1624.1|Name=mRNA_E-fasciculatus_F_contig1208.1624.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2539bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1208:10508..13046- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1208:10508..13046- >mRNA_E-fasciculatus_F_contig1208.1624.1 ID=mRNA_E-fasciculatus_F_contig1208.1624.1|Name=mRNA_E-fasciculatus_F_contig1208.1624.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=786bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1208:10508..13046- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |