mRNA_E-fasciculatus_F_contig11589.1267.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11589.1267.1
Unique NamemRNA_E-fasciculatus_F_contig11589.1267.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig11589.1267.1 vs. uniprot
Match: D8LR79_ECTSI (Cyclin-dependent kinases regulatory subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR79_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 2.040e-30
Identity = 54/70 (77.14%), Postives = 61/70 (87.14%), Query Frame = 1
Query:    1 ISQLPPAQLLSEAELESFGVFQDRGWVHYSILR-RPNILLFRRPMGTDPVTGAVDPVQQRMAQEGYRQQL 207
            +++L P+QLLSEAELES GVFQDRGW HYSILR  PNILLFRRPMGTDPVTG VDP +QRMA+  +RQQL
Sbjct:    1 MNKLSPSQLLSEAELESLGVFQDRGWEHYSILRPEPNILLFRRPMGTDPVTGTVDPARQRMAEAAFRQQL 70          
BLAST of mRNA_E-fasciculatus_F_contig11589.1267.1 vs. uniprot
Match: A0A7S2BBH9_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BBH9_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.260e-18
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 1
Query:   10 LPPAQLLSEAELESFGVFQDRGWVHYSILR-RPNILLFRRPMGTDPVTGAVDPVQQRMAQEGYRQQLNPDQS 222
            LP A+LLSE E    GV Q RGW HY+I R  P+ILLFRRP+GTDPVTG +DP  +R A++ Y+  L  +Q+
Sbjct:   49 LPKARLLSEQEWRGIGVQQSRGWAHYAIHRPEPHILLFRRPLGTDPVTGKIDPALEREAKDAYQNNLELNQA 120          
BLAST of mRNA_E-fasciculatus_F_contig11589.1267.1 vs. uniprot
Match: K0TR55_THAOC (Cyclin-dependent kinases regulatory subunit n=2 Tax=Thalassiosirales TaxID=33847 RepID=K0TR55_THAOC)

HSP 1 Score: 80.5 bits (197), Expect = 6.510e-18
Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = 1
Query:   10 LPPAQLLSEAELESFGVFQDRGWVHYSILR-RPNILLFRRPMGTDPVTGAVDPVQQRMAQEGYRQQL 207
            LP  +LLSE E  S GV Q RGW HY+I R  P+ILLFRRP+GTDP TGAVDP  +RMA E Y+ Q 
Sbjct:   45 LPKTRLLSENEWRSIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPQTGAVDPELKRMALEEYKGQF 111          
BLAST of mRNA_E-fasciculatus_F_contig11589.1267.1 vs. uniprot
Match: A0A7S3VGP8_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VGP8_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.430e-17
Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 1
Query:    1 ISQLPPAQLLSEAELESFGVFQDRGWVHYSILR-RPNILLFRRPMGTDPVTGAVDPVQQRMAQEGYRQQLNPDQS 222
            + QLP  +LLSE+E    GV Q RGWVHY++ R  P+ILLFRRP+GTDP TG VDP  +R A E Y+ Q    Q+
Sbjct:   29 LRQLPRNRLLSESEWRGVGVQQSRGWVHYALHRPEPHILLFRRPLGTDPQTGRVDPELKRQALEEYKTQFGLKQN 103          
BLAST of mRNA_E-fasciculatus_F_contig11589.1267.1 vs. uniprot
Match: A0A1E7F3Q6_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F3Q6_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 3.870e-17
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 1
Query:   10 LPPAQLLSEAELESFGVFQDRGWVHYSILR-RPNILLFRRPMGTDPVTGAVDPVQQRMAQEGYRQQLN 210
            LP ++LLSE+E    GV Q RGW HY+I R  P+ILLFRRP+GTDP +G VDP  +R A+E YR Q +
Sbjct:   34 LPKSRLLSESEWRGIGVQQSRGWGHYAIHRPEPHILLFRRPLGTDPQSGRVDPEMERKAREEYRAQYD 101          
BLAST of mRNA_E-fasciculatus_F_contig11589.1267.1 vs. uniprot
Match: A0A835YHQ2_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHQ2_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 5.340e-17
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 1
Query:   10 LPPAQLLSEAELESFGVFQDRGWVHYSILR-RPNILLFRRPMGTDPVTGAVDPVQQRMAQEGYRQQL 207
            LP  +LL E E    GV Q RGWVHY+I R  P+ILLF RP+GTDP++G VDP ++R A+EGY + L
Sbjct:   31 LPNTRLLQEEEWRLLGVQQSRGWVHYAIHRPEPHILLFHRPLGTDPLSGQVDPEKEREAKEGYAEHL 97          
BLAST of mRNA_E-fasciculatus_F_contig11589.1267.1 vs. uniprot
Match: D7G7T5_ECTSI (Cyclin-dependent kinases regulatory subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7T5_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 6.760e-17
Identity = 36/67 (53.73%), Postives = 52/67 (77.61%), Query Frame = 1
Query:   10 LPPAQLLSEAELESFGVFQDRGWVHYSILR-RPNILLFRRPMGTDPVTGAVDPVQQRMAQEGYRQQL 207
            LP +++L+E E    GV Q RGW+HY+I R  P+ILLF+RP+GTDPV+G VDPV ++ A++ Y+Q+L
Sbjct:   31 LPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPVLEQEAKKAYQQEL 97          
BLAST of mRNA_E-fasciculatus_F_contig11589.1267.1 vs. uniprot
Match: A0A6S9ANL1_9STRA (Cyclin-dependent kinases regulatory subunit n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9ANL1_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.570e-16
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 1
Query:   10 LPPAQLLSEAELESFGVFQDRGWVHYSILR-RPNILLFRRPMGTDPVTGAVDPVQQRMAQEGYRQQL 207
            LP  +LLSE+E    GV Q RGW+HY+I R  P+ILLFRRP+GTDP +G VDP  +R A+E Y+ Q 
Sbjct:   33 LPKNRLLSESEWRGIGVQQSRGWMHYAIHRPEPHILLFRRPLGTDPQSGQVDPELEREAREEYKNQF 99          
BLAST of mRNA_E-fasciculatus_F_contig11589.1267.1 vs. uniprot
Match: A0A7S0UH58_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UH58_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.590e-16
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   10 LPPAQLLSEAELESFGVFQDRGWVHYSILR-RPNILLFRRPMGTDPVTGAVDPVQQRMAQEGYRQQ 204
            LP ++LLSE+E    GV Q RGW HY+I R  P+ILLFRRP+GTDP +G VDP  +R A++ YR Q
Sbjct:   63 LPKSRLLSESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPQSGRVDPEMERKARDEYRSQ 128          
BLAST of mRNA_E-fasciculatus_F_contig11589.1267.1 vs. uniprot
Match: A0A7R9U1M9_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1M9_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.610e-16
Identity = 39/68 (57.35%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    7 QLPPAQLLSEAELESFGVFQDRGWVHYSILR-RPNILLFRRPMGTDPVTGAVDPVQQRMAQEGYRQQL 207
            +L   +LLS+AE    GV Q RGW HY+I R  P+ILLFRRP+GTDP TG VDP  QR A+E Y + L
Sbjct:   66 RLSKTKLLSDAEWRELGVQQSRGWEHYAIHRPEPHILLFRRPLGTDPTTGRVDPEAQREAKEAYMRSL 133          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11589.1267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR79_ECTSI2.040e-3077.14Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A7S2BBH9_9STRA2.260e-1855.56Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
K0TR55_THAOC6.510e-1862.69Cyclin-dependent kinases regulatory subunit n=2 Ta... [more]
A0A7S3VGP8_9STRA1.430e-1754.67Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A1E7F3Q6_9STRA3.870e-1757.35Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A835YHQ2_9STRA5.340e-1756.72Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
D7G7T5_ECTSI6.760e-1753.73Cyclin-dependent kinases regulatory subunit n=2 Ta... [more]
A0A6S9ANL1_9STRA1.570e-1656.72Cyclin-dependent kinases regulatory subunit n=2 Ta... [more]
A0A7S0UH58_9STRA1.590e-1657.58Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A7R9U1M9_9STRA2.610e-1657.35Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11589contigE-fasciculatus_F_contig11589:2206..2982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue2.8e-13
Seed eggNOG ortholog159749.K0TR55
KEGG koko:K02219
KEGG Pathwayko04111,ko05200,ko05222,map04111,map05200,map05222
EggNOG free text desc.Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function
EggNOG OGs2XGJ7@2836,KOG3484@1,KOG3484@2759
COG Functional cat.H
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCyclin-dependent kinase, regulatory subunit
Ec32 orthologEc-06_004050.1
Exons2
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927669.6052773-CDS-E-fasciculatus_F_contig11589:2205..23071622927669.6052773-CDS-E-fasciculatus_F_contig11589:2205..2307Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11589 2206..2307 +
1695995642.9397233-CDS-E-fasciculatus_F_contig11589:2205..23071695995642.9397233-CDS-E-fasciculatus_F_contig11589:2205..2307Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11589 2206..2307 +
1622927669.621388-CDS-E-fasciculatus_F_contig11589:2859..29821622927669.621388-CDS-E-fasciculatus_F_contig11589:2859..2982Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11589 2860..2982 +
1695995642.9533534-CDS-E-fasciculatus_F_contig11589:2859..29821695995642.9533534-CDS-E-fasciculatus_F_contig11589:2859..2982Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11589 2860..2982 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11589.1267.1prot_E-fasciculatus_F_contig11589.1267.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11589 2206..2982 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11589.1267.1

>prot_E-fasciculatus_F_contig11589.1267.1 ID=prot_E-fasciculatus_F_contig11589.1267.1|Name=mRNA_E-fasciculatus_F_contig11589.1267.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=75bp
ISQLPPAQLLSEAELESFGVFQDRGWVHYSILRRPNILLFRRPMGTDPVT
GAVDPVQQRMAQEGYRQQLNPDQS*
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mRNA from alignment at E-fasciculatus_F_contig11589:2206..2982+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11589.1267.1 ID=mRNA_E-fasciculatus_F_contig11589.1267.1|Name=mRNA_E-fasciculatus_F_contig11589.1267.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=777bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11589:2206..2982+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATAAGCCAGCTGCCACCTGCACAGCTACTTTCTGAGGCGGAGCTGGAAAG TTTCGGCGTGTTCCAGGACCGCGGCTGGGTGCACTACTCCATCCTTCGGC GAGTGATGCTTTGAGACGGCAGCAAAGCACACGCGAAAAGATCACACCAG CCCTATATGTTGATGATGTCGAGGGATGGATCCCTCTTTTTCAAGGGTGC CGCCAGGCGGCTAACCATGTTGTTTGAGGGCTTTCGCGTAGAGACAGATG TATACCCGAAACAATGTGGAAGGTTATGGTCGTGCTCTCGACTACGCAAA ACTAACCAAGGCAAAAAGTATTCCACTGGAAAAGGAGGCAATTGTTGTTA CCCAGTAGTAGAAGCAAAACCAGCCTCAATAACGATATCAACGCACAGCT CTGGCCACGAAAGGGTAGAATGACCGCCGAATTTGGAATAATAGCCATCC ATGAACGATGCGTATACGCTGCTAGATCCGAAAATCGGGCGAGGCGTATG CAGCCACGACTTTAGAGTCTGCCAATTTCCTACACCATTTTCACACTCCG CACGTTTGCGCGGCAACGTATCGGCGGTGCGTGTCCTAATGCTTACGTGC GGAGCGGTTCGTTCGACGCGCCCACCTGCCTAACCTCGTTCCTCTAGGCC GGAGCCAAATATCTTGCTGTTCCGGCGGCCTATGGGCACCGACCCCGTCA CTGGGGCCGTGGACCCGGTGCAGCAACGCATGGCTCAAGAAGGTTACAGG CAACAGCTTAATCCGGACCAGTCCTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11589:2206..2982+

>mRNA_E-fasciculatus_F_contig11589.1267.1 ID=mRNA_E-fasciculatus_F_contig11589.1267.1|Name=mRNA_E-fasciculatus_F_contig11589.1267.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=450bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11589:2206..2982+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATAAGCCAGCTGCCACCTGCACAGCTACTTTCTGAGGCGGAGCTGGAAAG
TTTCGGCGTGTTCCAGGACCGCGGCTGGGTGCACTACTCCATCCTTCGGC
GAATAAGCCAGCTGCCACCTGCACAGCTACTTTCTGAGGCGGAGCTGGAA
AGTTTCGGCGTGTTCCAGGACCGCGGCTGGGTGCACTACTCCATCCTTCG
GCGACCAAATATCTTGCTGTTCCGGCGGCCTATGGGCACCGACCCCGTCA
CTGGGGCCGTGGACCCGGTGCAGCAACGCATGGCTCAAGAAGGTTACAGG
CAACAGCTTAATCCGGACCAGTCCTGACCAAATATCTTGCTGTTCCGGCG
GCCTATGGGCACCGACCCCGTCACTGGGGCCGTGGACCCGGTGCAGCAAC
GCATGGCTCAAGAAGGTTACAGGCAACAGCTTAATCCGGACCAGTCCTGA
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