mRNA_E-fasciculatus_F_contig11589.1267.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig11589.1267.1 vs. uniprot
Match: D8LR79_ECTSI (Cyclin-dependent kinases regulatory subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR79_ECTSI) HSP 1 Score: 110 bits (276), Expect = 2.040e-30 Identity = 54/70 (77.14%), Postives = 61/70 (87.14%), Query Frame = 1
Query: 1 ISQLPPAQLLSEAELESFGVFQDRGWVHYSILR-RPNILLFRRPMGTDPVTGAVDPVQQRMAQEGYRQQL 207
+++L P+QLLSEAELES GVFQDRGW HYSILR PNILLFRRPMGTDPVTG VDP +QRMA+ +RQQL
Sbjct: 1 MNKLSPSQLLSEAELESLGVFQDRGWEHYSILRPEPNILLFRRPMGTDPVTGTVDPARQRMAEAAFRQQL 70
BLAST of mRNA_E-fasciculatus_F_contig11589.1267.1 vs. uniprot
Match: A0A7S2BBH9_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BBH9_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 2.260e-18 Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 1
Query: 10 LPPAQLLSEAELESFGVFQDRGWVHYSILR-RPNILLFRRPMGTDPVTGAVDPVQQRMAQEGYRQQLNPDQS 222
LP A+LLSE E GV Q RGW HY+I R P+ILLFRRP+GTDPVTG +DP +R A++ Y+ L +Q+
Sbjct: 49 LPKARLLSEQEWRGIGVQQSRGWAHYAIHRPEPHILLFRRPLGTDPVTGKIDPALEREAKDAYQNNLELNQA 120
BLAST of mRNA_E-fasciculatus_F_contig11589.1267.1 vs. uniprot
Match: K0TR55_THAOC (Cyclin-dependent kinases regulatory subunit n=2 Tax=Thalassiosirales TaxID=33847 RepID=K0TR55_THAOC) HSP 1 Score: 80.5 bits (197), Expect = 6.510e-18 Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = 1
Query: 10 LPPAQLLSEAELESFGVFQDRGWVHYSILR-RPNILLFRRPMGTDPVTGAVDPVQQRMAQEGYRQQL 207
LP +LLSE E S GV Q RGW HY+I R P+ILLFRRP+GTDP TGAVDP +RMA E Y+ Q
Sbjct: 45 LPKTRLLSENEWRSIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPQTGAVDPELKRMALEEYKGQF 111
BLAST of mRNA_E-fasciculatus_F_contig11589.1267.1 vs. uniprot
Match: A0A7S3VGP8_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VGP8_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 1.430e-17 Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 1
Query: 1 ISQLPPAQLLSEAELESFGVFQDRGWVHYSILR-RPNILLFRRPMGTDPVTGAVDPVQQRMAQEGYRQQLNPDQS 222
+ QLP +LLSE+E GV Q RGWVHY++ R P+ILLFRRP+GTDP TG VDP +R A E Y+ Q Q+
Sbjct: 29 LRQLPRNRLLSESEWRGVGVQQSRGWVHYALHRPEPHILLFRRPLGTDPQTGRVDPELKRQALEEYKTQFGLKQN 103
BLAST of mRNA_E-fasciculatus_F_contig11589.1267.1 vs. uniprot
Match: A0A1E7F3Q6_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F3Q6_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 3.870e-17 Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 1
Query: 10 LPPAQLLSEAELESFGVFQDRGWVHYSILR-RPNILLFRRPMGTDPVTGAVDPVQQRMAQEGYRQQLN 210
LP ++LLSE+E GV Q RGW HY+I R P+ILLFRRP+GTDP +G VDP +R A+E YR Q +
Sbjct: 34 LPKSRLLSESEWRGIGVQQSRGWGHYAIHRPEPHILLFRRPLGTDPQSGRVDPEMERKAREEYRAQYD 101
BLAST of mRNA_E-fasciculatus_F_contig11589.1267.1 vs. uniprot
Match: A0A835YHQ2_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHQ2_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 5.340e-17 Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 1
Query: 10 LPPAQLLSEAELESFGVFQDRGWVHYSILR-RPNILLFRRPMGTDPVTGAVDPVQQRMAQEGYRQQL 207
LP +LL E E GV Q RGWVHY+I R P+ILLF RP+GTDP++G VDP ++R A+EGY + L
Sbjct: 31 LPNTRLLQEEEWRLLGVQQSRGWVHYAIHRPEPHILLFHRPLGTDPLSGQVDPEKEREAKEGYAEHL 97
BLAST of mRNA_E-fasciculatus_F_contig11589.1267.1 vs. uniprot
Match: D7G7T5_ECTSI (Cyclin-dependent kinases regulatory subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7T5_ECTSI) HSP 1 Score: 77.8 bits (190), Expect = 6.760e-17 Identity = 36/67 (53.73%), Postives = 52/67 (77.61%), Query Frame = 1
Query: 10 LPPAQLLSEAELESFGVFQDRGWVHYSILR-RPNILLFRRPMGTDPVTGAVDPVQQRMAQEGYRQQL 207
LP +++L+E E GV Q RGW+HY+I R P+ILLF+RP+GTDPV+G VDPV ++ A++ Y+Q+L
Sbjct: 31 LPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPVLEQEAKKAYQQEL 97
BLAST of mRNA_E-fasciculatus_F_contig11589.1267.1 vs. uniprot
Match: A0A6S9ANL1_9STRA (Cyclin-dependent kinases regulatory subunit n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9ANL1_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 1.570e-16 Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 1
Query: 10 LPPAQLLSEAELESFGVFQDRGWVHYSILR-RPNILLFRRPMGTDPVTGAVDPVQQRMAQEGYRQQL 207
LP +LLSE+E GV Q RGW+HY+I R P+ILLFRRP+GTDP +G VDP +R A+E Y+ Q
Sbjct: 33 LPKNRLLSESEWRGIGVQQSRGWMHYAIHRPEPHILLFRRPLGTDPQSGQVDPELEREAREEYKNQF 99
BLAST of mRNA_E-fasciculatus_F_contig11589.1267.1 vs. uniprot
Match: A0A7S0UH58_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UH58_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 1.590e-16 Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 1
Query: 10 LPPAQLLSEAELESFGVFQDRGWVHYSILR-RPNILLFRRPMGTDPVTGAVDPVQQRMAQEGYRQQ 204
LP ++LLSE+E GV Q RGW HY+I R P+ILLFRRP+GTDP +G VDP +R A++ YR Q
Sbjct: 63 LPKSRLLSESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPQSGRVDPEMERKARDEYRSQ 128
BLAST of mRNA_E-fasciculatus_F_contig11589.1267.1 vs. uniprot
Match: A0A7R9U1M9_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1M9_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 2.610e-16 Identity = 39/68 (57.35%), Postives = 47/68 (69.12%), Query Frame = 1
Query: 7 QLPPAQLLSEAELESFGVFQDRGWVHYSILR-RPNILLFRRPMGTDPVTGAVDPVQQRMAQEGYRQQL 207
+L +LLS+AE GV Q RGW HY+I R P+ILLFRRP+GTDP TG VDP QR A+E Y + L
Sbjct: 66 RLSKTKLLSDAEWRELGVQQSRGWEHYAIHRPEPHILLFRRPLGTDPTTGRVDPEAQREAKEAYMRSL 133 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11589.1267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig11589.1267.1 >prot_E-fasciculatus_F_contig11589.1267.1 ID=prot_E-fasciculatus_F_contig11589.1267.1|Name=mRNA_E-fasciculatus_F_contig11589.1267.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=75bp ISQLPPAQLLSEAELESFGVFQDRGWVHYSILRRPNILLFRRPMGTDPVTback to top mRNA from alignment at E-fasciculatus_F_contig11589:2206..2982+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig11589.1267.1 ID=mRNA_E-fasciculatus_F_contig11589.1267.1|Name=mRNA_E-fasciculatus_F_contig11589.1267.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=777bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11589:2206..2982+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11589:2206..2982+ >mRNA_E-fasciculatus_F_contig11589.1267.1 ID=mRNA_E-fasciculatus_F_contig11589.1267.1|Name=mRNA_E-fasciculatus_F_contig11589.1267.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=450bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11589:2206..2982+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |