mRNA_E-fasciculatus_F_contig1104.838.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1104.838.1
Unique NamemRNA_E-fasciculatus_F_contig1104.838.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1104.838.1 vs. uniprot
Match: A0A6H5KX12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX12_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 2.110e-17
Identity = 71/99 (71.72%), Postives = 81/99 (81.82%), Query Frame = 3 
Query:  243 IADGQNATQLFVVDGGSRLHLSGMTLAHGSSASSGGAIHANQSSVSFSGSTSLISNHALRNXXXXXXXXXXXXXXGDGAQFSFNFANDSGGAIYATDSS 539
            +ADGQN TQLF VDGGSRLHLSGM +AHGS+A  GGAI A++S VSFSG+TS +SN A   XXXXXXXXXXXXXX DG +FS N A +SGGAI+A DSS
Sbjct:   86 VADGQNVTQLFYVDGGSRLHLSGMAIAHGSAAY-GGAIFASRSDVSFSGNTSFVSNSASXXXXXXXXXXXXXXXXXDGTKFSSNSAVESGGAIFAIDSS 183
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BLAST of mRNA_E-fasciculatus_F_contig1104.838.1 vs. uniprot
Match: A0A6H5L4F7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4F7_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 6.770e-17
Identity = 51/80 (63.75%), Postives = 60/80 (75.00%), Query Frame = 2 
Query:    2 CIGLLVAVSRSKEVQNYSVGASALTVGSPEDAAALATSIILCSANGDFAVQWNGEIFVEETIHVTSGATLNITGAGPGAI 241
            C+GLL AV++++ +QN SV  S + V S EDAAALA SII CS NGD AV W GE+ VEETI V  G +LNITGAGPGAI
Sbjct:    8 CMGLLAAVAQTQVLQNCSVDTSPVMVASTEDAAALAASIIGCS-NGDIAVAWVGEVVVEETIFVIGGTSLNITGAGPGAI 86
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BLAST of mRNA_E-fasciculatus_F_contig1104.838.1 vs. uniprot
Match: A0A6H5JL43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL43_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.990e-15
Identity = 57/104 (54.81%), Postives = 67/104 (64.42%), Query Frame = 3 
Query:  243 IADGQNATQLFVVDGGSRLHLSGMTLAHGSSASSGGAIHANQSSVSFSGSTSLISNHA------LRNXXXXXXXXXXXXXXGDGAQFSFNFANDSGGAIYATDS 536
            IADG  +TQLF VDGGS LHLS MTL++G++ S GGA+ ANQSSVSF G+TS  SN A      LRN              GDG +FS N+AN SGGAI A+ S
Sbjct:   61 IADGSGSTQLFAVDGGSNLHLSNMTLSNGNT-SFGGAVFANQSSVSFFGTTSFSSNSAYYGAPFLRNMEAINAYESTVSWDGDGTRFSSNYANGSGGAILASPS 163
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BLAST of mRNA_E-fasciculatus_F_contig1104.838.1 vs. uniprot
Match: A0A6H5J7J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7J9_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.370e-11
Identity = 40/77 (51.95%), Postives = 55/77 (71.43%), Query Frame = 2 
Query:   11 LLVAVSRSKEVQNYSVGASALTVGSPEDAAALATSIILCSANGDFAVQWNGEIFVEETIHVTSGATLNITGAGPGAI 241
            LL  ++ ++E+Q  ++   +LTVGS ED A L    + CS NGDF+V+W G++FV ETI +TSG +LNITG GPGAI
Sbjct:   11 LLAVIAPAQELQECTLDTGSLTVGSSEDVADL-IGFLNCS-NGDFSVEWVGDVFVTETIRITSGTSLNITGDGPGAI 85
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BLAST of mRNA_E-fasciculatus_F_contig1104.838.1 vs. uniprot
Match: D7FM10_ECTSI (Probable extracellular nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM10_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 4.400e-10
Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 2 
Query:    5 IGLLVAVSRSKEVQNYSVGASALTVGSPEDAAALATSIILCSANGDFAVQWNGEIFVEETIHVTSGATLNITGAGPGA 238
            +G LVAV+ ++     S+  S  TV S EDA  LAT ++ CS +GDFAVQW GE+ V ETI VT+G +LNITG G GA
Sbjct:   61 VGFLVAVATAQATLPCSLDTSLWTVASSEDAVTLAT-LLRCS-DGDFAVQWVGEVIVTETIRVTNGTSLNITGDGSGA 136
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BLAST of mRNA_E-fasciculatus_F_contig1104.838.1 vs. uniprot
Match: D7G1E0_ECTSI (EsV-1-12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E0_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 6.530e-8
Identity = 49/99 (49.49%), Postives = 57/99 (57.58%), Query Frame = 3 
Query:  243 IADGQNATQLFVVDGGSRLHLSGMTLAHGSSASSGGAIHANQSSVSFSGSTSLISNHALRNXXXXXXXXXXXXXXGDGAQFSFNFANDSGGAIYATDSS 539
            IADG  +TQLFVV+GGS LHLS MTL++G+ A SGGAI A  SSVSFSG+TS                            F+ NFAN  GGAIYA  S+
Sbjct:  281 IADGGGSTQLFVVEGGSTLHLSDMTLSNGN-ALSGGAISAADSSVSFSGNTS----------------------------FNSNFANFYGGAIYANSST 350
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BLAST of mRNA_E-fasciculatus_F_contig1104.838.1 vs. uniprot
Match: D8LHW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHW0_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 3.640e-7
Identity = 42/81 (51.85%), Postives = 48/81 (59.26%), Query Frame = 3 
Query:  243 IADGQNATQLFVVDGGSRLHLSGMTLAHGSSASSGGAIHANQSSVSFSGSTSLISNHALRNXXXXXXXXXXXXXXGDGAQF 485
            IADGQ+ T+LF VDGGS LHLS +TL +G   S GGAI+A QSSVSF G+ S ISN A                 GDG  F
Sbjct:   33 IADGQDTTRLFYVDGGSSLHLSDVTLLNGRY-SDGGAIYAEQSSVSFGGNVSFISNSASNFGGAIFTNSSTLSWDGDGTLF 112
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BLAST of mRNA_E-fasciculatus_F_contig1104.838.1 vs. uniprot
Match: A0A6H5JWT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWT9_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.020e-5
Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = 2 
Query:   11 LLVAVSRSKEVQNYSVGASALTVGSPEDAAALATSIILCSANGDFAVQWNGEIFVEETIHVTSGATLNITGA 226
            LL A  + + +   S G S  TV S   AA+LA+S+  CS NGDFAV+W+GE+ V  TIHV  G +L ITGA
Sbjct:   16 LLPAFGQGQALLPCSAGTSRSTVTSTAGAASLASSLE-CS-NGDFAVEWDGEVVVARTIHVFEGTSLTITGA 85
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1104.838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KX12_9PHAE2.110e-1771.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4F7_9PHAE6.770e-1763.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL43_9PHAE2.990e-1554.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7J9_9PHAE2.370e-1151.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FM10_ECTSI4.400e-1053.85Probable extracellular nuclease n=1 Tax=Ectocarpus... [more]
D7G1E0_ECTSI6.530e-849.49EsV-1-12 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
D8LHW0_ECTSI3.640e-751.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWT9_9PHAE2.020e-550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1104contigE-fasciculatus_F_contig1104:8938..9890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionPectin lyase fold/virulence factor
Ec32 orthologEc-18_000700.1
Hectar predicted targeting categoryother localisation
Exons1
Model size954
Cds size795
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927609.5998828-UTR-E-fasciculatus_F_contig1104:8937..90951622927609.5998828-UTR-E-fasciculatus_F_contig1104:8937..9095Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1104 8938..9095 +
1695995617.712246-UTR-E-fasciculatus_F_contig1104:8937..90951695995617.712246-UTR-E-fasciculatus_F_contig1104:8937..9095Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1104 8938..9095 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927609.6174128-CDS-E-fasciculatus_F_contig1104:9095..98901622927609.6174128-CDS-E-fasciculatus_F_contig1104:9095..9890Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1104 9096..9890 +
1695995617.7296007-CDS-E-fasciculatus_F_contig1104:9095..98901695995617.7296007-CDS-E-fasciculatus_F_contig1104:9095..9890Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1104 9096..9890 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1104.838.1prot_E-fasciculatus_F_contig1104.838.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1104 9096..9890 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1104.838.1

>prot_E-fasciculatus_F_contig1104.838.1 ID=prot_E-fasciculatus_F_contig1104.838.1|Name=mRNA_E-fasciculatus_F_contig1104.838.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=265bp
MGKSSSKKQSMSRVAQPSTSPELDQAPFIADGQNATQLFVVDGGSRLHLS
GMTLAHGSSASSGGAIHANQSSVSFSGSTSLISNHALRNGGAIYASGSNV
SWYGDGAQFSFNFANDSGGAIYATDSSTVSWDGDDTQFTSNSADIDGGAM
CVSYDSVVYWYGDGTQFISNSAVYSDGGAMRVSYDSVVYWYGDGTQFTSN
SAESDRGAMYVSSDSAVYWNGDDTHFTSNSALGDPGDGGGAIYAIDNSSV
SWDGDGTRFTSNNAV
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mRNA from alignment at E-fasciculatus_F_contig1104:8938..9890+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1104.838.1 ID=mRNA_E-fasciculatus_F_contig1104.838.1|Name=mRNA_E-fasciculatus_F_contig1104.838.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=953bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1104:8938..9890+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGCATCGGCCTTCTCGTGGCCGTCTCTCGGAGCAAAGAAGTTCAGAACT
ACAGCGTCGGCGCGAGCGCTTTGACCGTCGGCAGCCCCGAAGACGCGGCC
GCTCTGGCGACCTCCATCATTTTGTGTTCGGCGAACGGTGACTTCGCCGT
TCAGTGGAATGGGGAAATCTTCGTCGAAGAAACAATCCATGTCACGAGTG
GCGCAACCCTCAACATCACCGGAGCTGGACCAGGCGCCATTCATTGCCGA
TGGACAGAACGCCACCCAATTGTTCGTCGTAGACGGGGGTTCGAGATTGC
ACCTCTCGGGCATGACCCTCGCCCACGGTAGTAGCGCTTCTAGCGGCGGG
GCCATACATGCAAACCAATCGAGTGTCTCGTTCAGCGGAAGCACGTCATT
GATCTCCAACCACGCTCTCCGAAATGGAGGTGCAATCTACGCGTCTGGTT
CGAACGTGTCCTGGTACGGCGACGGCGCCCAGTTCAGCTTCAACTTTGCG
AATGACAGTGGAGGTGCAATCTACGCGACGGATTCTTCAACCGTGTCCTG
GGACGGTGACGACACCCAGTTCACCTCCAACTCCGCTGACATTGACGGCG
GTGCGATGTGCGTGTCGTATGATTCAGTCGTGTACTGGTATGGCGACGGC
ACCCAGTTCATTTCCAACTCCGCTGTGTACAGCGACGGAGGCGCGATGCG
CGTGTCGTATGATTCAGTCGTGTACTGGTATGGCGACGGCACCCAGTTCA
CCTCCAACTCCGCTGAAAGTGACAGAGGCGCGATGTACGTGTCGTCTGAT
TCGGCCGTGTACTGGAATGGCGACGACACCCACTTCACCTCCAACTCCGC
TCTAGGAGATCCGGGTGATGGAGGAGGTGCAATCTATGCGATTGACAACT
CCAGCGTGTCGTGGGATGGCGACGGCACGCGGTTCACCTCAAACAACGCG
GTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1104:8938..9890+

>mRNA_E-fasciculatus_F_contig1104.838.1 ID=mRNA_E-fasciculatus_F_contig1104.838.1|Name=mRNA_E-fasciculatus_F_contig1104.838.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1590bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1104:8938..9890+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGAAATCTTCGTCGAAGAAACAATCCATGTCACGAGTGGCGCAACC
CTCAACATCACCGGAGCTGGACCAGGCGCCATTCATTGCCGATGGACAGA
ACGCCACCCAATTGTTCGTCGTAGACGGGGGTTCGAGATTGCACCTCTCG
GGCATGACCCTCGCCCACGGTAGTAGCGCTTCTAGCGGCGGGGCCATACA
TGCAAACCAATCGAGTGTCTCGTTCAGCGGAAGCACGTCATTGATCTCCA
ACCACGCTCTCCGAAATGGAGGTGCAATCTACGCGTCTGGTTCGAACGTG
TCCTGGTACGGCGACGGCGCCCAGTTCAGCTTCAACTTTGCGAATGACAG
TGGAGGTGCAATCTACGCGACGGATTCTTCAACCGTGTCCTGGGACGGTG
ACGACACCCAGTTCACCTCCAACTCCGCTGACATTGACGGCGGTGCGATG
TGCGTGTCGTATGATTCAGTCGTGTACTGGTATGGCGACGGCACCCAGTT
CATTTCCAACTCCGCTGTGTACAGCGACGGAGGCGCGATGCGCGTGTCGT
ATGATTCAGTCGTGTACTGGTATGGCGACGGCACCCAGTTCACCTCCAAC
TCCGCTGAAAGTGACAGAGGCGCGATGTACGTGTCGTCTGATTCGGCCGT
GTACTGGAATGGCGACGACACCCACTTCACCTCCAACTCCGCTCTAGGAG
ATCCGGGTGATGGAGGAGGTGCAATCTATGCGATTGACAACTCCAGCGTG
TCGTGGGATGGCGACGGCACGCGGTTCACCTCAAACAACGCGGTCATGGG
GAAATCTTCGTCGAAGAAACAATCCATGTCACGAGTGGCGCAACCCTCAA
CATCACCGGAGCTGGACCAGGCGCCATTCATTGCCGATGGACAGAACGCC
ACCCAATTGTTCGTCGTAGACGGGGGTTCGAGATTGCACCTCTCGGGCAT
GACCCTCGCCCACGGTAGTAGCGCTTCTAGCGGCGGGGCCATACATGCAA
ACCAATCGAGTGTCTCGTTCAGCGGAAGCACGTCATTGATCTCCAACCAC
GCTCTCCGAAATGGAGGTGCAATCTACGCGTCTGGTTCGAACGTGTCCTG
GTACGGCGACGGCGCCCAGTTCAGCTTCAACTTTGCGAATGACAGTGGAG
GTGCAATCTACGCGACGGATTCTTCAACCGTGTCCTGGGACGGTGACGAC
ACCCAGTTCACCTCCAACTCCGCTGACATTGACGGCGGTGCGATGTGCGT
GTCGTATGATTCAGTCGTGTACTGGTATGGCGACGGCACCCAGTTCATTT
CCAACTCCGCTGTGTACAGCGACGGAGGCGCGATGCGCGTGTCGTATGAT
TCAGTCGTGTACTGGTATGGCGACGGCACCCAGTTCACCTCCAACTCCGC
TGAAAGTGACAGAGGCGCGATGTACGTGTCGTCTGATTCGGCCGTGTACT
GGAATGGCGACGACACCCACTTCACCTCCAACTCCGCTCTAGGAGATCCG
GGTGATGGAGGAGGTGCAATCTATGCGATTGACAACTCCAGCGTGTCGTG
GGATGGCGACGGCACGCGGTTCACCTCAAACAACGCGGTC
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