mRNA_E-fasciculatus_F_contig10937.751.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10937.751.1
Unique NamemRNA_E-fasciculatus_F_contig10937.751.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10937.751.1 vs. uniprot
Match: D8LMX2_ECTSI (Plectin isoform 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMX2_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 1.740e-28
Identity = 74/78 (94.87%), Postives = 75/78 (96.15%), Query Frame = 1 
Query:    1 RGRQAEAEALQLHDAAEKALEEVKQGARTTIEEMAARHSEELEAERKRVSEEEAVAREAALKAAGEESSQQQTKAVAN 234
            RGRQAE EALQL DAAEKALEEVKQGARTTIEEMAARHSEELEAERKRVS+EEAVAREAALKAAGEE SQQQTKAVAN
Sbjct: 1763 RGRQAEVEALQLQDAAEKALEEVKQGARTTIEEMAARHSEELEAERKRVSDEEAVAREAALKAAGEEFSQQQTKAVAN 1840
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10937.751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMX2_ECTSI1.740e-2894.87Plectin isoform 1 n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10937contigE-fasciculatus_F_contig10937:3071..4385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue1.2e-24
Seed eggNOG ortholog2880.D8LMX2
EggNOG OGs28KYD@1,2QTF4@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size281
Cds size279
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10937.751.1prot_E-fasciculatus_F_contig10937.751.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10937 3071..4384 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927594.098897-CDS-E-fasciculatus_F_contig10937:3070..32101622927594.098897-CDS-E-fasciculatus_F_contig10937:3070..3210Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10937 3071..3210 +
1695995611.7343225-CDS-E-fasciculatus_F_contig10937:3070..32101695995611.7343225-CDS-E-fasciculatus_F_contig10937:3070..3210Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10937 3071..3210 +
1622927594.1140733-CDS-E-fasciculatus_F_contig10937:3724..38181622927594.1140733-CDS-E-fasciculatus_F_contig10937:3724..3818Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10937 3725..3818 +
1695995611.7512548-CDS-E-fasciculatus_F_contig10937:3724..38181695995611.7512548-CDS-E-fasciculatus_F_contig10937:3724..3818Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10937 3725..3818 +
1622927594.1250827-CDS-E-fasciculatus_F_contig10937:4339..43841622927594.1250827-CDS-E-fasciculatus_F_contig10937:4339..4384Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10937 4340..4384 +
1695995611.7612345-CDS-E-fasciculatus_F_contig10937:4339..43841695995611.7612345-CDS-E-fasciculatus_F_contig10937:4339..4384Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10937 4340..4384 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10937.751.1

>prot_E-fasciculatus_F_contig10937.751.1 ID=prot_E-fasciculatus_F_contig10937.751.1|Name=mRNA_E-fasciculatus_F_contig10937.751.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=93bp
RGRQAEAEALQLHDAAEKALEEVKQGARTTIEEMAARHSEELEAERKRVS
EEEAVAREAALKAAGEESSQQQTKAVANARAAATAEARARAER
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mRNA from alignment at E-fasciculatus_F_contig10937:3071..4385+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10937.751.1 ID=mRNA_E-fasciculatus_F_contig10937.751.1|Name=mRNA_E-fasciculatus_F_contig10937.751.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1315bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10937:3071..4385+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAGGACGGCAAGCCGAGGCGGAAGCTTTGCAGCTGCACGACGCAGCGGA
GAAAGCCCTGGAGGAGGTGAAGCAAGGGGCCCGGACCACCATCGAGGAAA
TGGCTGCTCGACATTCTGAAGAACTCGAGGCGGAGAGAAAGTAAGCCTTT
CCTGGTACTGTTTGTTGTTGCTCGCTCTTGTTGCAATATAAATGTTTCAC
GTGTTGTCTGGTCCACCCACGCCTTTTTACGCCCATGCCATGTGTTTACT
CTCTCTGTAGCGCGATCTCTGCGGCTAAATCTAAGATATTTTAGTGAATC
GGCGTGCCTGTGCCGTCTTCAAAGTCTCAAGCGAGTCTCACATCAATACC
AACAGCTGGTGGACACCTGCTGGATAGTTCCGTGATACACACGACGTGGC
GGACGGTTGAAGTTGCGTTCAAGCGCCTGTTTCGTCACGCGGGGCCCGAG
TCCTTATGCCCACTTTGGGGCAACCAGAGAAAAGCCGCTTCTTCAGACCC
TAGGTTGGGCTTCACCACCTGGCACTAGATCTATTCTCCACACAGGCGTA
CGTCTTGGCAACACGCTGCGTAGCATCCAAACAGCAAGTTGTTTCGCATT
GTGGCGGTACTTGTACCGTGACACGGTACGGCGTGACATGACATGGCGTG
GCAGACGGGTTTCCGAAGAGGAGGCGGTTGCGAGGGAGGCGGCGCTAAAG
GCCGCGGGAGAAGAGTCCTCGCAACAGCAAACGAAGGCCGTCGCCAATGT
GAGCTACCATTGGACCTCGTTGCTACGCACTTAGAGAGCTACAATGCTGT
TGTCGTCAACCCCGCGTGTGTTTCTTTGAGTTAGTTCGGAGCCATGCATA
CCTTGGGGCAAAGCAGAGACCAATTTCTGTGCTCACCTAAACAGCAGGAC
GACGTTCGATTTGTTGGGGGCGGAACCAGCATGAAAGAATGCGCCGTCTA
CCCTGAGTCGTTGCCAGTCTAAATTCCGTCATGCCCTTCAATAGGGTGGG
CGGCGACTTGAGGATACTTGCAGACATACTAACACCCTAAAAACTATATC
TTGTTGCAGACTTTGCAGCCGAAGCAGACGTTAAAGCTTTGATTATTGCT
ATCGTGCTTCATCAATTCATCAACTTTCGCTTCCTCAGAGCATTGGCCGT
CTTAATGTGCAAGGAATGTTGCCGCTACCTGTGGCCAACCACTCACGTCC
ATTCATTGCAACCAAGCTTCACACAACCCAAACACGTGCCCAAAACCAAC
GTCTGATTGCACCGCAAAGGCTCGGGCTGCGGCGACGGCCGAGGCGAGAG
CGCGCGCCGAGCGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10937:3071..4385+

>mRNA_E-fasciculatus_F_contig10937.751.1 ID=mRNA_E-fasciculatus_F_contig10937.751.1|Name=mRNA_E-fasciculatus_F_contig10937.751.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=558bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10937:3071..4385+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAGGACGGCAAGCCGAGGCGGAAGCTTTGCAGCTGCACGACGCAGCGGA
GAAAGCCCTGGAGGAGGTGAAGCAAGGGGCCCGGACCACCATCGAGGAAA
TGGCTGCTCGACATTCTGAAGAACTCGAGGCGGAGAGAAAAGAGGACGGC
AAGCCGAGGCGGAAGCTTTGCAGCTGCACGACGCAGCGGAGAAAGCCCTG
GAGGAGGTGAAGCAAGGGGCCCGGACCACCATCGAGGAAATGGCTGCTCG
ACATTCTGAAGAACTCGAGGCGGAGAGAAAACGGGTTTCCGAAGAGGAGG
CGGTTGCGAGGGAGGCGGCGCTAAAGGCCGCGGGAGAAGAGTCCTCGCAA
CAGCAAACGAAGGCCGTCGCCAATACGGGTTTCCGAAGAGGAGGCGGTTG
CGAGGGAGGCGGCGCTAAAGGCCGCGGGAGAAGAGTCCTCGCAACAGCAA
ACGAAGGCCGTCGCCAATGCTCGGGCTGCGGCGACGGCCGAGGCGAGAGC
GCGCGCCGAGCGGGCTCGGGCTGCGGCGACGGCCGAGGCGAGAGCGCGCG
CCGAGCGG
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