mRNA_E-fasciculatus_F_contig1093.745.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1093.745.1
Unique NamemRNA_E-fasciculatus_F_contig1093.745.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1093.745.1 vs. uniprot
Match: A0A6H5KZG9_9PHAE (Protein-serine/threonine phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG9_9PHAE)

HSP 1 Score: 404 bits (1037), Expect = 8.020e-127
Identity = 272/323 (84.21%), Postives = 280/323 (86.69%), Query Frame = 1 
Query:  280 MKRDRDGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNRPQQXXXXXXXXXXXXSSASRNGHVA-VSNGSSNRPPAAFAPATNAVGTASGTNGXXXXXXANVFTASSXXXXXXXXXXTPTSAATKRPKLGYERPDNWRATADEVLLKAGLERGSKEGRSRVLDEEGLSTRKGNDTKQXXXXXXXXXATKTVATTRSKRRFAVVCSANFNRSMMAHKLLKEHNFQVESYGTGREVRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMAGFDVVLCFETRVFYLVVE 1245
            MKRDRDG+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNRPQQXXXXXXXXXXXXSSASRNG VA VSNGSSN PPAAFAPAT AVGTAS  NG      ANVFTASS          TPTS+A KRPKLGYE PDNWRATADEVL+KAGLE G KEG+SR  DEEG STR+GND ++         ATKT+A  RSKRRFAVVCSANFNRSMMAHKLLKEHNFQVESYGTGREVRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMA FDVVLCFETRVFYLVVE
Sbjct:    1 MKRDRDGSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNRPQQXXXXXXXXXXXXSSASRNGQVAAVSNGSSNHPPAAFAPATAAVGTASRMNGAGDGGGANVFTASSYSERAPSSSSTPTSSAMKRPKLGYEHPDNWRATADEVLVKAGLEGGDKEGKSRAGDEEGSSTRRGNDKEKQQQPG----ATKTMAAARSKRRFAVVCSANFNRSMMAHKLLKEHNFQVESYGTGREVRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMADFDVVLCFETRVFYLVVE 319
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BLAST of mRNA_E-fasciculatus_F_contig1093.745.1 vs. uniprot
Match: D8LSD4_ECTSI (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSD4_ECTSI)

HSP 1 Score: 320 bits (819), Expect = 1.000e-97
Identity = 181/225 (80.44%), Postives = 183/225 (81.33%), Query Frame = 1 
Query:  592 ANVFTASSXXXXXXXXXXTPTSAATKRPKLGYERPDNWRATADEVLLKAGLERGSKEGRSRVLDEEGLSTRKGNDTKQXXXXXXXXXATKTVATTRSKRRFAVVCSANFNRSMMAHKLLKEHNFQVESYGTGREVRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMAGFDVVLCFETRVFYLVVEGTYFSRT 1266
            ANVFTASS          T TS+A KRPKLGYE PDNWRATADEVL+KAGLER  KE RSR  DEEG           XXXXXXXXX        RSKRRFAVVCSANFNRSMMAHKLLKEHNFQVESYGTGREVRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMA FDVVLCFETRVFYLVVEGT    T
Sbjct:   10 ANVFTASSSSARAPSSSSTATSSAMKRPKLGYEHPDNWRATADEVLVKAGLERVGKEERSRAGDEEGSXX----XXXXXXXXXXXXXXXXXXXXARSKRRFAVVCSANFNRSMMAHKLLKEHNFQVESYGTGREVRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMADFDVVLCFETRVFYLVVEGTCSPET 230
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BLAST of mRNA_E-fasciculatus_F_contig1093.745.1 vs. uniprot
Match: D8LTB5_ECTSI (Protein-serine/threonine phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTB5_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 4.040e-38
Identity = 76/123 (61.79%), Postives = 98/123 (79.67%), Query Frame = 1 
Query:  880 SKRRFAVVCSANFNRSMMAHKLLKEHNFQVESYGTGREVRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMAGFDVVLCFETRVFYLVVEG 1248
            S++ FAVVCS+N NRS+MA  LLKEH+ + +SYGTGREVRLPGKD  SP+ FPFGTPY +I D L  ++EALF +N++L L+ RNA  K AP+R+Q ++G  +A FDVV+CFE+RVF LVVEG
Sbjct:  140 SRKSFAVVCSSNVNRSIMAEILLKEHDIRAQSYGTGREVRLPGKDSKSPQSFPFGTPYVEIRDFLARQNEALFRRNSVLGLLERNATTKRAPERWQSLDGEHVASFDVVVCFESRVFDLVVEG 262
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BLAST of mRNA_E-fasciculatus_F_contig1093.745.1 vs. uniprot
Match: A0A2N9EIU2_FAGSY (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EIU2_FAGSY)

HSP 1 Score: 133 bits (334), Expect = 1.780e-32
Identity = 65/124 (52.42%), Postives = 83/124 (66.94%), Query Frame = 1 
Query:  883 KRRFAVVCSANFNRSMMAHKLLKEHNFQVESYGTGREVRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMAGFDVVLCFETRVFYLVVEGTY 1254
            K R+A+VCS+N NRSM AH LLK   F V SYGT   V+LPG  +  P V+ FGTPY+ +FD L+ KD  L+ +N +LP++ RN+ VK APQR+QE        FDVV  FE +VF +VVEG Y
Sbjct:    2 KFRYAMVCSSNQNRSMEAHSLLKRQGFDVSSYGTRAHVKLPGPSLREPNVYDFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNSAVKLAPQRWQENAAD--GSFDVVFTFEEKVFDMVVEGWY 123
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BLAST of mRNA_E-fasciculatus_F_contig1093.745.1 vs. uniprot
Match: A0A836ASG4_9ROSI (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Salix suchowensis TaxID=1278906 RepID=A0A836ASG4_9ROSI)

HSP 1 Score: 133 bits (334), Expect = 2.570e-32
Identity = 64/122 (52.46%), Postives = 84/122 (68.85%), Query Frame = 1 
Query:  883 KRRFAVVCSANFNRSMMAHKLLKEHNFQVESYGTGREVRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMAGFDVVLCFETRVFYLVVEG 1248
            K R+A+VCS+N NRSM AH LLK H F V SYGTG  V+LPG  +  P V+ FGTPY+ +FD L+ KD  L+ +N +LP++ RN+ VK APQR+Q+        F VVL FE +VF +V+EG
Sbjct:    2 KFRYAMVCSSNQNRSMEAHSLLKRHGFDVSSYGTGSHVKLPGPSLREPNVYDFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNSGVKLAPQRWQDNAAD--GSFTVVLTFEEKVFDMVLEG 121
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BLAST of mRNA_E-fasciculatus_F_contig1093.745.1 vs. uniprot
Match: A0A251SE46_HELAN (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=5 Tax=Asteraceae TaxID=4210 RepID=A0A251SE46_HELAN)

HSP 1 Score: 134 bits (337), Expect = 3.920e-32
Identity = 69/136 (50.74%), Postives = 92/136 (67.65%), Query Frame = 1 
Query:  889 RFAVVCSANFNRSMMAHKLLKEHNFQVESYGTGREVRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMAGFDVVLCFETRVFYLVVEGTYFSRTHEVCERYLGV 1296
            R+A+VCS+N NRSM AH LLK   F V SYGTG  V+LPG  +  P V+ FGTPY+ +FD+L+ KD  L+ +N +LP++ RN  VK APQR+QE  GPD   FDVV  FE +VF +VVE  + +R H + +  L +
Sbjct:    4 RYAMVCSSNQNRSMEAHFLLKREGFDVCSYGTGTHVKLPGPSLREPNVYEFGTPYKQMFDELRRKDPELYKRNGILPMLKRNLAVKTAPQRWQE-NGPD-GHFDVVFTFEEKVFDMVVEDLH-TRDHVLLKPVLVI 136
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BLAST of mRNA_E-fasciculatus_F_contig1093.745.1 vs. uniprot
Match: UPI0010A4EFFF (RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A4EFFF)

HSP 1 Score: 131 bits (329), Expect = 5.430e-32
Identity = 64/125 (51.20%), Postives = 86/125 (68.80%), Query Frame = 1 
Query:  883 KRRFAVVCSANFNRSMMAHKLLKEHNFQVESYGTGREVRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQE--IEGPDMAGFDVVLCFETRVFYLVVEGT 1251
            K R+AVVCS+N NRSM AH LLK   F V SYGTG  V+LPG+ +  P V+ FGTPY+ + D L+ KD+ L+ +N +LP++ RN+ VK APQR+Q+   EG     FD+V  FE +VF +V EG+
Sbjct:    2 KFRYAVVCSSNQNRSMEAHSLLKRQGFDVCSYGTGAHVKLPGRSLREPNVYDFGTPYKQMLDDLRRKDQELYKRNGILPMLKRNSTVKLAPQRWQDNAAEG----SFDIVFTFEEKVFDMVAEGS 122
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BLAST of mRNA_E-fasciculatus_F_contig1093.745.1 vs. uniprot
Match: A0A7S0QYP3_9CHLO (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QYP3_9CHLO)

HSP 1 Score: 134 bits (336), Expect = 5.500e-32
Identity = 67/121 (55.37%), Postives = 86/121 (71.07%), Query Frame = 1 
Query:  883 KRRFAVVCSANFNRSMMAHKLLKEHNFQVESYGTGREVRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMAGFDVVLCFETRVFYLVVE 1245
            K+RFA+VC++N NRSM AH +LK +NFQV SYG G  V+LPG +  SP  +PFGTPY+ I+D LK KDE L+ +N LLP++ RN  VK AP+R+Q+    +   FDVVL FE  VF  VVE
Sbjct:    5 KKRFAMVCASNQNRSMEAHCMLKNNNFQVSSYGVGAHVKLPGPNQKSPNTYPFGTPYQYIYDDLKKKDEELYIRNGLLPMLERNITVKTAPERWQD----NRDQFDVVLTFEESVFEKVVE 121
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BLAST of mRNA_E-fasciculatus_F_contig1093.745.1 vs. uniprot
Match: UPI00053FFF3D (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FFF3D)

HSP 1 Score: 133 bits (334), Expect = 9.900e-32
Identity = 63/124 (50.81%), Postives = 88/124 (70.97%), Query Frame = 1 
Query:  883 KRRFAVVCSANFNRSMMAHKLLKEHNFQVESYGTGREVRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMAGFDVVLCFETRVFYLVVEGTY 1254
            K R+A+VCS+N NRSM AH ++K+  F V SYGTG  V+LPG  I+ P V+ FGTPY+ +FD+L+ KD  L+ +N +LP++ RN+ VK APQR+Q+     +  FDVV+ FE +VF +VVE  Y
Sbjct:    2 KLRYAMVCSSNQNRSMEAHFIMKKQGFDVSSYGTGAHVKLPGPSISKPNVYEFGTPYKQMFDELRRKDPELYKRNGILPMLKRNSSVKLAPQRWQDNAHDGV--FDVVITFEEKVFDMVVEDLY 123
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BLAST of mRNA_E-fasciculatus_F_contig1093.745.1 vs. uniprot
Match: A0A4S4E2H4_CAMSI (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=4 Tax=asterids TaxID=71274 RepID=A0A4S4E2H4_CAMSI)

HSP 1 Score: 133 bits (334), Expect = 1.050e-31
Identity = 66/138 (47.83%), Postives = 91/138 (65.94%), Query Frame = 1 
Query:  883 KRRFAVVCSANFNRSMMAHKLLKEHNFQVESYGTGREVRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMAGFDVVLCFETRVFYLVVEGTYFSRTHEVCERYLGV 1296
            K R+A+VCS+N NRSM AH LLK   F+V SYGTG  V+LPG  +  P V+ FGTPY+ +FD L+ KD  L+ +N +LP++ RN+ VK APQR+Q+        FDVV  FE +VF +V+E  + SR H + +  L +
Sbjct:    3 KLRYAMVCSSNQNRSMEAHSLLKREGFEVSSYGTGSHVKLPGPSLREPNVYDFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNSAVKLAPQRWQDNAADGY--FDVVFTFEEKVFDMVIEDLH-SRDHVLMKPVLVI 137
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1093.745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZG9_9PHAE8.020e-12784.21Protein-serine/threonine phosphatase n=1 Tax=Ectoc... [more]
D8LSD4_ECTSI1.000e-9780.44RNA polymerase II subunit A C-terminal domain phos... [more]
D8LTB5_ECTSI4.040e-3861.79Protein-serine/threonine phosphatase n=1 Tax=Ectoc... [more]
A0A2N9EIU2_FAGSY1.780e-3252.42RNA polymerase II subunit A C-terminal domain phos... [more]
A0A836ASG4_9ROSI2.570e-3252.46RNA polymerase II subunit A C-terminal domain phos... [more]
A0A251SE46_HELAN3.920e-3250.74RNA polymerase II subunit A C-terminal domain phos... [more]
UPI0010A4EFFF5.430e-3251.20RNA polymerase II subunit A C-terminal domain phos... [more]
A0A7S0QYP3_9CHLO5.500e-3255.37RNA polymerase II subunit A C-terminal domain phos... [more]
UPI00053FFF3D9.900e-3250.81RNA polymerase II subunit A C-terminal domain phos... [more]
A0A4S4E2H4_CAMSI1.050e-3147.83RNA polymerase II subunit A C-terminal domain phos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1093contigE-fasciculatus_F_contig1093:13433..19896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score322.0
Seed ortholog evalue3.4e-85
Seed eggNOG ortholog2880.D8LSD4
Preferred nameSSU72
KEGG koko:K15544
KEGG Pathwayko03015,map03015
GOsGO:0001173,GO:0001174,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0004725,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005847,GO:0005849,GO:0006139,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006368,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006464,GO:0006470,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0008420,GO:0009058,GO:0009059,GO:0009302,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010564,GO:0010639,GO:0010948,GO:0016070,GO:0016071,GO:0016074,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0023052,GO:0030846,GO:0030847,GO:0031123,GO:0031124,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043244,GO:0043412,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045786,GO:0045839,GO:0045930,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051252,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060255,GO:0060623,GO:0065007,GO:0070013,GO:0070940,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097659,GO:0098781,GO:0098787,GO:0098789,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902340,GO:1903379,GO:1903506,GO:1905213,GO:2000112,GO:2001141,GO:2001251
EggNOG free text desc.RNA polymerase II subunit A C-terminal domain phosphatase
EggNOG OGsCOG5211@1,KOG2424@2759
EC3.1.3.16
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPhosphotyrosine protein phosphatase I superfamily
Ec32 orthologEc-21_003270.1
Exons3
Model size3555
Cds size1032
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1093.745.1prot_E-fasciculatus_F_contig1093.745.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1093 16146..17652 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927593.5956883-UTR-E-fasciculatus_F_contig1093:13432..135251622927593.5956883-UTR-E-fasciculatus_F_contig1093:13432..13525Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1093 13433..13525 +
1695995611.5272236-UTR-E-fasciculatus_F_contig1093:13432..135251695995611.5272236-UTR-E-fasciculatus_F_contig1093:13432..13525Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1093 13433..13525 +
1622927593.6090617-UTR-E-fasciculatus_F_contig1093:15959..161451622927593.6090617-UTR-E-fasciculatus_F_contig1093:15959..16145Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1093 15960..16145 +
1695995611.538889-UTR-E-fasciculatus_F_contig1093:15959..161451695995611.538889-UTR-E-fasciculatus_F_contig1093:15959..16145Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1093 15960..16145 +
1622927593.6422436-UTR-E-fasciculatus_F_contig1093:17652..198961622927593.6422436-UTR-E-fasciculatus_F_contig1093:17652..19896Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1093 17653..19896 +
1695995611.573482-UTR-E-fasciculatus_F_contig1093:17652..198961695995611.573482-UTR-E-fasciculatus_F_contig1093:17652..19896Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1093 17653..19896 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927593.6201634-CDS-E-fasciculatus_F_contig1093:16145..168551622927593.6201634-CDS-E-fasciculatus_F_contig1093:16145..16855Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1093 16146..16855 +
1695995611.5526884-CDS-E-fasciculatus_F_contig1093:16145..168551695995611.5526884-CDS-E-fasciculatus_F_contig1093:16145..16855Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1093 16146..16855 +
1622927593.6319952-CDS-E-fasciculatus_F_contig1093:17330..176521622927593.6319952-CDS-E-fasciculatus_F_contig1093:17330..17652Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1093 17331..17652 +
1695995611.5629687-CDS-E-fasciculatus_F_contig1093:17330..176521695995611.5629687-CDS-E-fasciculatus_F_contig1093:17330..17652Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1093 17331..17652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1093.745.1

>prot_E-fasciculatus_F_contig1093.745.1 ID=prot_E-fasciculatus_F_contig1093.745.1|Name=mRNA_E-fasciculatus_F_contig1093.745.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=344bp
MKRDRDGNQHQHHYEDQHQWHQHQQYQQHQQEEEEIPPPPPPRNRPQQEI
PPPPPPRIRPSSASRNGHVAVSNGSSNRPPAAFAPATNAVGTASGTNGGG
DGGGANVFTASSSSARAPSSSSTPTSAATKRPKLGYERPDNWRATADEVL
LKAGLERGSKEGRSRVLDEEGLSTRKGNDTKQQQQQHQQQGATKTVATTR
SKRRFAVVCSANFNRSMMAHKLLKEHNFQVESYGTGREVRLPGKDIASPE
VFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEG
PDMAGFDVVLCFETRVFYLVVEGTYFSRTHEVCERYLGVPMPL*
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mRNA from alignment at E-fasciculatus_F_contig1093:13433..19896+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1093.745.1 ID=mRNA_E-fasciculatus_F_contig1093.745.1|Name=mRNA_E-fasciculatus_F_contig1093.745.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=6464bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1093:13433..19896+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCGGTTTATTACCACCCAACAAAGCTAGCGCGCGAGAGAAATCACGACG
GATCTGCTATTCCAGGAATCCGATCCAGTCGTCTGTAAGACAGGTGTGAA
GGTCTCTTGGTTTTGGGGGCCTGGAGTCGATGCCAGTTCACTTCTTTCGT
GTTCTTGTAGTCGGCTTGGTTCGATCTAGATGTGCCATCTACCAGCTCTC
ACCGACCGAGCTCTTCTCTCTCTCCTCCTCCTCCTACCGCTGCAGTGGTT
CTTCGTAACGCTTCTGCAGCGTCCGTATGCGACGTGGATCCCGGCGTAGC
GCACCTGTCCTCCGTGTTTCCCTCTTACTTATTTCTCCCTGCTGTTGGCT
CTCTACGGCGATTGTTGTTGCTTTTCGTAGGCAGTGTTTCGCTGCATTCG
ACGGCACCTCCGAACTCATTCGACTGATTGTACCGCTCCCTTTCTCTCGC
GTGTCTCGTGTAGAGAGCAGGGGCGCGCCACATTTTGACTTGTAGGTTCC
AGACCGCAGCTGTGCCCCACCGTTGTGGATTTCAGGCAGGTAGCACAGAG
AGTAGTATTTGGGGAAGTTCTCTGTTCACGGGAGGTTGCTCGCTCGATTG
TGCCACAATATGCTAGGTGGTGTGCGATGTACCAGGAGGGCCAAGGGGTC
TGTTTTGTTTTTTTTCGTCCAGCTCTTCGCTCGCAATTGCGTCAAACCTA
TGCATACATCCATACCCCATGGCTTTGCCTCTCAAGCTGAACGTCTCCGG
TTTCACGCCCGGGATGTTTACTCTGTGGCGCACGCCTTGATCGCCAACGT
GCAAGGGATTCACGACTTCCGTTCCTCAACTGCTTTACAACGGCAGGGGG
TACACTCATTTCTTACTTTTGTACTTGTACGTCAATCACAGATCACCGAT
CGCCGGACGCGAGTCCCGCTACACAAACTCTTTGGCTGGGATTCAAATCT
CACGACCCAGCTAGCGCTAACGGCAGTTTTAAGAAACCGCTACAGCAGAA
ACGCTTAGAGGGGTAGAGCACTCGTCCTCGAGGCGGCACAACAATAGCTG
TTCTTCTTACCTAAGTCATGATAATTCGGACCCCCCACACTCACTTGGGG
AAGCCGTTCTCATCAGCTCTCACTGTATTGTACGAAGTAGGGGCACCTCA
AAATGTCCCAACTTCTTGAGCTACAAAATGCCCTGCAAACTCCCAGGGTG
AATGACGATATTGTGGGTTTCGTTTGACCCGGAGGTTGGTGGTGAAGTTG
GATCCCGTGCTTGCTATATGTACCACCATACACCACAAACAGTTTTGGAA
GTGGAATCAAGATGGTTGTCACCAGGAGCTTGCGTTCAACAGTTTCGCAG
GTCAGCTACATACATGCGGCCACAAGCTCCGCTACTCGGGTGGTACGACC
GCCGTGGGTGGGGATCCAAATGTGCGCGGGTTTCCAACTAGCCATAAATA
CATACCTGTGGTTCACTGCGTGTGGTGCTGACCGTTTATTGCTATGCATA
GCTCGGAACGCCCGAGCCTGACTCGTGGTTCTGGCAGTTGCAAAAATGGG
TGGAGCAACAGGATTTCCAGTTGTGGCGACATGAATTTGTCCGTATGAAT
GGAAAAACAAGACATATATGCTTTACGTATGGATGGCGTTTGCTGGATTC
ATGCTGGCGCTGTTTGTGTGAGGTACGCGAGCTGCGACAACACTCTTGAC
CAAAACAATGTGTTAACGGCAAACAAAACAATGGGATGTGGAAAGGAGCG
TGTAAGAGAATGGTTCCGACAAGCTTGTTGAGAGCCTTCGGCCTTGAATG
TGTATGTTGATGTTGGCGCCTGATCGCCGTCGAGACGTTGGTGAAACTCG
CTGCACAACTATGCCAAAAAGTCAGCAAGCAACTTTCCGCAGAGTGCTGC
TGTTGTATCCTGAGCCTTCGCTAAGCTCGTTCAGACCAGTCCACACATAT
CCCGGGGTCTTTCCTAGATCGCTGTTCTTGTGCATGCTCGCCAGCTGTGG
TCTGTACCGGTCACAAAGGTATATCCTCACTACTGCTGTGTAGCATACGG
TTTGCAACCTATACAGGGCGCTGCCGTGCACTTGTAGCCACGCTCCGACT
GCGTTCAGTTTCATTCAGTAGATCTACCCGGATGCCTCAGAATTCCACGC
TTGGAACTTCTGGCGTGGTGACTCTGCTCGTTTTTCCCGCCAACATGTAC
CTATTACGTCCTACATCCCCCTTTGATGTATGTGGCATTACATGCGACGA
TGGGTTCTTGTCCAGTTTCCATGTGTGACCATTGCATATCTGCCGAAGAA
TCATCCTTTATTGATAGAGCTCGTAGGGAAACAAGTACGACGGAAGGGAC
TCGGTAGCATTGTGCGCGTTGCCAACTGGATTTATTTTCAACATGGTCTT
GTATTGGTCACCCTCGCCGCCGCCCTCTTGATGCTGCTCCTGCTGGTGAT
GTACGGCGAATTGTAATATGCCCTTTGCTGTTGCTTTGTTTGGTGATGTG
ATTTGACTCGCTGTCTTCCGTCTACAGAACGAGAGGACTCGTCCTTTGGA
GCAAGCGTGTGCGCTGAGGAGGAGACAAGCGACACAACTCACTGCACATC
ACTCGATCGAAACCGCGCTGTGCCACCAATAGCAGTACTTCCAACCGCGT
CCTCGCCCGCCCCTGTCTTCACAGTCGGTAACACACGAGGTTGTAAGAAC
GGCCTCCGAAGACATGAAGCGCGATCGCGACGGCAATCAGCACCAGCACC
ACTATGAGGATCAGCATCAGTGGCATCAGCACCAGCAGTACCAACAGCAT
CAACAGGAGGAGGAAGAGATACCCCCCCCTCCACCACCAAGGAACCGACC
GCAGCAGGAGATCCCCCCGCCCCCACCGCCTAGAATTCGGCCTTCGTCAG
CGTCGAGGAATGGCCATGTCGCAGTCTCCAACGGATCCTCGAACCGTCCT
CCAGCTGCTTTCGCTCCTGCTACTAACGCCGTGGGGACTGCGTCAGGAAC
GAACGGGGGCGGTGACGGGGGCGGGGCGAACGTCTTCACCGCTTCAAGTT
CTTCCGCGAGGGCCCCGTCATCATCATCGACCCCAACTTCCGCTGCTACG
AAGAGACCGAAGCTGGGCTATGAACGTCCAGACAACTGGCGAGCAACGGC
CGACGAGGTGCTTCTGAAAGCAGGTCTAGAACGAGGCAGCAAGGAGGGAA
GATCGAGGGTTCTAGACGAGGAAGGTTTGTCCACGCGCAAGGGCAATGAT
ACGAAGCAGCAGCAGCAGCAGCATCAGCAGCAGGGCGCGACAAAAACGGT
GGCAACGACCCGGTCAAAAAGGCGGTTTGCTGTCGTTTGTTCAGCCAATT
TCAACCGCAGCATGATGGCCCATAAGCTTCTTAAGGAACATAACTTTCAG
GTTGAATCCTACGGTACTGGCAGGTGAGGCTTGTTACACTGTTTGTCTGC
TAGTGTTTGTTGGACCACCACCGCAGGCAAAATGCCAAAAACAGTATCCA
TGTACCCATCGTTGTTAACGTTCTGTAGGGGTGTCGCCAGCCAAAGTGGT
GATGGCCGTGTGCTCCGGAAGGTTGCACAAGTTCAGTGCACGAGCTTCCC
CCCCTCCTACTCAGCATTGAACTAGTTTTTGTTAAGTGGATGGCTCCATG
TTTCGCGGGCAAAAAAAATGTAAGGAATGATGCAGCGGCAAAGCGATCGG
GATCATGCCCCTCTCTGCTGCGACTCGCCGAACATCTCACGGCGCTTGGT
GATGTGCTAGTGTGGTCCGGTGAAAACCCGGCGTGCTCCGTCCCGGCATG
GTCTAACCACTACGGCATGGACGGTTTTGAGTATCCCTTCTGCTCGCTCC
CGTCCTTACCCCCTTTTTCATTTTTCGCCCCTTCTCCATGACGCACAGGG
AAGTGAGGCTACCGGGCAAGGACATCGCCAGCCCAGAAGTGTTTCCTTTC
GGAACGCCCTACCGGGATATCTTCGACAAGCTGAAGGCCAAAGACGAAGC
GCTTTTTAGCCAGAACAACCTGCTGCCCTTGGTGGCCCGAAACGCAATGG
TGAAAGCCGCCCCGCAGCGGTTTCAAGAAATCGAGGGCCCGGACATGGCG
GGTTTCGACGTGGTGCTATGCTTCGAAACGAGGGTTTTTTACTTGGTCGT
GGAAGGTACATATTTCTCCCGAACTCATGAAGTTTGCGAACGTTATTTGG
GGGTACCAATGCCGTTGTGAACAAGATATGCGAAATTAAACAAGAAGTTG
GTGCGAAGACAGAAGGGCTGATGCACGGGCTTGATTGCCGAGGTTTGTCA
CAGAGGGAGGTGGGGGGGGGGGGTGTACAGCAATAGCTGTAGCACCCTCT
GACGCTCTTCTTTCAAGCATACCGGAGTTAACACAACTAAAAGACAGCAC
ACGCACACACCAAAGAAAGGTAAAGTGTTTTGTAGCGGCCTCTTATTGTT
CGAAGTAAATATTCGTATTTGGCGGGTGGATCACCCTTTCCCCTGCTACA
CTGCTGTTAACTCAGTTCCTCGACTACTGCTGCGATCAACGTGCAGGGCT
TAATCAGGTGAGATGAGTAATTATTGATTGCACCTGTGTGCTCGACTGTG
TTTCTTTTCCGTGTTTTTGTGCGCATTTTCTCCCAACGACGAAAGTGCCG
GGAGATTCACATGTGTCGCTATCATAGTTGTTGTCTCATCCTGGGTTGTT
AGTCCCTCATTTGTGGCTTGGCGTTAGTGTTCCATTTTTCTCGGTCGCGG
TGGGACGCGTCGTCCTCAGAATGCTTCTTTACATGCAAATATTGCTTCGT
GTCTCGTATCGGCAGAACGGGGCGTCAAAACGTTGAGATGTCTCTTGCTT
GTTCGCCAGGATCTGTTGGCTACGACGAGGGCACCGACTAGGGGGTATAT
GTCACACGCATCTAGCTGAAAGAAGTACTTGTTGTAGTTTATCGGGGTAC
CAAGTTCCAAGTGATGCCAAAGGCAGTGCTGTCGGTCGGCAGAAGGGAAC
GAGAGCTTATACAGGATACGGGCGTACAGCGTTTGTCCCTTTCGCGGACT
GGACCCCTTTCTCCTGCTCCTGGAAGGCATTATGCGTACTCATGCCGTAC
AGCAGTTAGCGCCCGCACTTGAGAACCTCTTACGTTGGCCGGGGCGCGTT
CCTAGTATTCTCTCTGGTGGGTTCCCGTTCCCCAACGTCGACTGTACAGG
TGTTTGTATGTTTCTTGACCGGCTCTGTCCTTTTGGCCAAGCTCTTACTG
TCTTTGTGTTGAGCCTAAGTTTCTCCACTCCTGAGGTCTTCAGTGTGGGC
ACCTATTGTATGCGCGAAACAACAGTCGAACGAATAGTCTGGAGAAGGGC
ACCTACTACACTGCTGTGGTTCCAGCACTTCGGCGAACAGCGGGGTGAAC
CGCAATTGCCGTGGGTTTCTTACCCAGTGCCAACAGCTGTCCACAGTGGG
TAAGCATGCTTGGTTCACGAGGTGCACTGTTTTCTCCTCAGACTACAGCA
ACAGAGTGCGAAGAAAAACGTCATTCCGAGGTGACACACGCATTCCCGCA
CACTCTCAGCTGAACGTTCCTCGGTTGTGCTTGAACCCCGGCAACAGGAC
AAAGAAAGGTACACCGGTACATAGATGGCGACAACTATGATGTAGTCACT
GCGAAGTAAATAGGCTGGAAACTACTAGCAACTGAAAATAGGTCAGGCTG
GCGTGAACACGCTGCAGATAGTCGCATAGACGTCGCGATCGTTAGCAGCA
GTGGCTGTGGGCGCAAGGAAAGAACACATCGTTCGCAACCCAGATTGCGT
TGAACGGCTCAGTCAGCCTTCATCGGAATATTACGAGTGCTTGTTACTGG
AGAAGCTTTCAACTCACTGCCGGCGAACCGGGCCTTCGGCGTGGTCTTCA
TCTCAACAGCATCATCTCGGAGCATGATGTCATTCCCGTTCGCGAGGAGC
ATGGAAAGTAGTGGACCATGTAGATCCAATTGATCGGCGCTGCACTACCA
ACGGCTGATCGCACGACTCCTTCCTGTGAATGTCACGGGTGGACAGCCTG
TTGCATGCAATCGCTATGCATACAGTCGTTGCTCTCCTTGATACATCCAC
GAACGAGCGTGTACCTACCTTTGCATGTTACGAAAGCAAAGGCAAACCAA
CCCTCTTTTGTTCTTTCGTTTGATCCACCCTTGGCCCACGAAGAGGGTCA
ACGGTTAACCAAGAATTTTTGCAAGAGCTCAACGAAATCTTTGCCCAGAT
GGGCCAAGAGAGTTTGGGGGTGGATAGATACCCCCGCTTCAACTTCAATC
CACGGGTCGATTCACTGTTGAAATGCTTCGACCCCCGTCCCTCGGCACTT
GGCGTTACAGACTTGGCAATCACGAGACCCGGAGACGATTACGCGTCGCG
CATGATCAATACGACCGCCACCTTAAAAAAGCTCGTTTGAAGTTTCAGCT
AACGGCGGAGGGCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1093:13433..19896+

>mRNA_E-fasciculatus_F_contig1093.745.1 ID=mRNA_E-fasciculatus_F_contig1093.745.1|Name=mRNA_E-fasciculatus_F_contig1093.745.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2064bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1093:13433..19896+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAGCGCGATCGCGACGGCAATCAGCACCAGCACCACTATGAGGATCA
GCATCAGTGGCATCAGCACCAGCAGTACCAACAGCATCAACAGGAGGAGG
AAGAGATACCCCCCCCTCCACCACCAAGGAACCGACCGCAGCAGGAGATC
CCCCCGCCCCCACCGCCTAGAATTCGGCCTTCGTCAGCGTCGAGGAATGG
CCATGTCGCAGTCTCCAACGGATCCTCGAACCGTCCTCCAGCTGCTTTCG
CTCCTGCTACTAACGCCGTGGGGACTGCGTCAGGAACGAACGGGGGCGGT
GACGGGGGCGGGGCGAACGTCTTCACCGCTTCAAGTTCTTCCGCGAGGGC
CCCGTCATCATCATCGACCCCAACTTCCGCTGCTACGAAGAGACCGAAGC
TGGGCTATGAACGTCCAGACAACTGGCGAGCAACGGCCGACGAGGTGCTT
CTGAAAGCAGGTCTAGAACGAGGCAGCAAGGAGGGAAGATCGAGGGTTCT
AGACGAGGAAGGTTTGTCCACGCGCAAGGGCAATGATACGAAGCAGCAGC
AGCAGCAGCATCAGCAGCAGGGCGCGACAAAAACGGTGGCAACGACCCGG
TCAAAAAGGCGGTTTGCTGTCGTTTGTTCAGCCAATTTCAACCGCAGCAT
GATGGCCCATAAGCTTCTTAAGGAACATAACTTTCAGGTTGAATCCTACG
GTACTGGCAGATGAAGCGCGATCGCGACGGCAATCAGCACCAGCACCACT
ATGAGGATCAGCATCAGTGGCATCAGCACCAGCAGTACCAACAGCATCAA
CAGGAGGAGGAAGAGATACCCCCCCCTCCACCACCAAGGAACCGACCGCA
GCAGGAGATCCCCCCGCCCCCACCGCCTAGAATTCGGCCTTCGTCAGCGT
CGAGGAATGGCCATGTCGCAGTCTCCAACGGATCCTCGAACCGTCCTCCA
GCTGCTTTCGCTCCTGCTACTAACGCCGTGGGGACTGCGTCAGGAACGAA
CGGGGGCGGTGACGGGGGCGGGGCGAACGTCTTCACCGCTTCAAGTTCTT
CCGCGAGGGCCCCGTCATCATCATCGACCCCAACTTCCGCTGCTACGAAG
AGACCGAAGCTGGGCTATGAACGTCCAGACAACTGGCGAGCAACGGCCGA
CGAGGTGCTTCTGAAAGCAGGTCTAGAACGAGGCAGCAAGGAGGGAAGAT
CGAGGGTTCTAGACGAGGAAGGTTTGTCCACGCGCAAGGGCAATGATACG
AAGCAGCAGCAGCAGCAGCATCAGCAGCAGGGCGCGACAAAAACGGTGGC
AACGACCCGGTCAAAAAGGCGGTTTGCTGTCGTTTGTTCAGCCAATTTCA
ACCGCAGCATGATGGCCCATAAGCTTCTTAAGGAACATAACTTTCAGGTT
GAATCCTACGGTACTGGCAGGGAAGTGAGGCTACCGGGCAAGGACATCGC
CAGCCCAGAAGTGTTTCCTTTCGGAACGCCCTACCGGGATATCTTCGACA
AGCTGAAGGCCAAAGACGAAGCGCTTTTTAGCCAGAACAACCTGCTGCCC
TTGGTGGCCCGAAACGCAATGGTGAAAGCCGCCCCGCAGCGGTTTCAAGA
AATCGAGGGCCCGGACATGGCGGGTTTCGACGTGGTGCTATGCTTCGAAA
CGAGGGTTTTTTACTTGGTCGTGGAAGGTACATATTTCTCCCGAACTCAT
GAAGTTTGCGAACGTTATTTGGGGGTACCAATGCCGTTGTGAGGAAGTGA
GGCTACCGGGCAAGGACATCGCCAGCCCAGAAGTGTTTCCTTTCGGAACG
CCCTACCGGGATATCTTCGACAAGCTGAAGGCCAAAGACGAAGCGCTTTT
TAGCCAGAACAACCTGCTGCCCTTGGTGGCCCGAAACGCAATGGTGAAAG
CCGCCCCGCAGCGGTTTCAAGAAATCGAGGGCCCGGACATGGCGGGTTTC
GACGTGGTGCTATGCTTCGAAACGAGGGTTTTTTACTTGGTCGTGGAAGG
TACATATTTCTCCCGAACTCATGAAGTTTGCGAACGTTATTTGGGGGTAC
CAATGCCGTTGTGA
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