mRNA_E-fasciculatus_F_contig10591.473.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10591.473.1
Unique NamemRNA_E-fasciculatus_F_contig10591.473.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10591.473.1 vs. uniprot
Match: D8LSB8_ECTSI (PNPLA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSB8_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 5.700e-43
Identity = 94/121 (77.69%), Postives = 99/121 (81.82%), Query Frame = 2 
Query:  317 MEEVARVIGEVADGVLKHVSDRMPGLEAFTLEILDTIFAPRLVLRHLMVAVALQTGLLTYNGLVMVANRLLSRMSTRHGEAKAYRHKMRNAKNYE-----VRDVTVLS*QDSGRRKHCSTL 664
            ME V R+IGEVAD VLKHVSDRMPGLEAFTLEILDTIFAPRLVLRHLMVAVALQTGLLTYNGLV+VANRLLSR+STRHGEAKAYRHKMR AKNYE        V  L   D  R++  S L
Sbjct:    1 MERVGRMIGEVADAVLKHVSDRMPGLEAFTLEILDTIFAPRLVLRHLMVAVALQTGLLTYNGLVVVANRLLSRLSTRHGEAKAYRHKMRTAKNYEEWRMYAERVDHLEGHDEWRKRPDSLL 121
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BLAST of mRNA_E-fasciculatus_F_contig10591.473.1 vs. uniprot
Match: A0A835ZEF1_9STRA (Acyl transferase/acyl hydrolase/lysophospholipase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEF1_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.030e-12
Identity = 41/96 (42.71%), Postives = 65/96 (67.71%), Query Frame = 2 
Query:  314 KMEEVARVIGEVADGVLKHVSDRMPGLEAFTLEILDTIFAPRLVLRHLMVAVALQTGLLTYNGLVMVANRLLSRMSTRHGEAKAYRHKMRNAKNYE 601
            ++ E  R++ ++AD  L+ +S++ PG+EA+ LE L+TIFAPRL+LRHL+ A+ALQ GL+T+N        ++ RM+ +H   K     +R A+NYE
Sbjct:   20 RLSEYLRLLEQLADKALQLLSEKAPGIEAWLLEALETIFAPRLLLRHLVAAMALQAGLITWNMATAAYGHMMGRMNRKHRALKEAHAALRLAQNYE 115
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10591.473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSB8_ECTSI5.700e-4377.69PNPLA domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A835ZEF1_9STRA1.030e-1242.71Acyl transferase/acyl hydrolase/lysophospholipase ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10591contigE-fasciculatus_F_contig10591:1076..4125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.2
Seed ortholog evalue9e-40
Seed eggNOG ortholog2880.D8LSB8
Preferred nameTGL3
KEGG rclassRC00004,RC00020,RC00037,RC00041,RC00055,RC00094,RC00523
KEGG koko:K14674,ko:K14675,ko:K21596
KEGG ReactionR01315,R01317,R01462,R02053,R02241,R02250,R02687,R07064,R07379,R07387,R07859
KEGG Pathwayko00100,ko00561,ko00564,ko00565,ko00590,ko00591,ko00592,ko01100,ko01110,map00100,map00561,map00564,map00565,map00590,map00591,map00592,map01100,map01110
KEGG ModuleM00089,M00098
GOsGO:0000003,GO:0003674,GO:0003824,GO:0004620,GO:0004623,GO:0004771,GO:0004806,GO:0005575,GO:0005622,GO:0005623,GO:0005811,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006642,GO:0006644,GO:0006793,GO:0006796,GO:0007114,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012511,GO:0016042,GO:0016298,GO:0016740,GO:0016746,GO:0016747,GO:0016787,GO:0016788,GO:0019433,GO:0019637,GO:0019954,GO:0032505,GO:0042171,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044424,GO:0044464,GO:0046461,GO:0046464,GO:0046486,GO:0046503,GO:0047499,GO:0051301,GO:0052689,GO:0071617,GO:0071618,GO:0071704,GO:1901575
EggNOG free text desc.triglyceride mobilization
EggNOG OGsCOG1752@1,KOG2214@2759
EC2.3.1.51,3.1.1.13,3.1.1.3,3.1.1.4
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03000
Hectar predicted targeting categoryother localisation
Exons2
Model size1047
Cds size567
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10591.473.1prot_E-fasciculatus_F_contig10591.473.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10591 1137..3706 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927556.8347552-UTR-E-fasciculatus_F_contig10591:1075..11361622927556.8347552-UTR-E-fasciculatus_F_contig10591:1075..1136Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10591 1076..1136 +
1695995594.2350192-UTR-E-fasciculatus_F_contig10591:1075..11361695995594.2350192-UTR-E-fasciculatus_F_contig10591:1075..1136Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10591 1076..1136 +
1622927556.869268-UTR-E-fasciculatus_F_contig10591:3706..41251622927556.869268-UTR-E-fasciculatus_F_contig10591:3706..4125Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10591 3707..4125 +
1695995594.2626212-UTR-E-fasciculatus_F_contig10591:3706..41251695995594.2626212-UTR-E-fasciculatus_F_contig10591:3706..4125Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10591 3707..4125 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927556.845153-CDS-E-fasciculatus_F_contig10591:1136..15251622927556.845153-CDS-E-fasciculatus_F_contig10591:1136..1525Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10591 1137..1525 +
1695995594.2456255-CDS-E-fasciculatus_F_contig10591:1136..15251695995594.2456255-CDS-E-fasciculatus_F_contig10591:1136..1525Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10591 1137..1525 +
1622927556.8592699-CDS-E-fasciculatus_F_contig10591:3528..37061622927556.8592699-CDS-E-fasciculatus_F_contig10591:3528..3706Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10591 3529..3706 +
1695995594.253919-CDS-E-fasciculatus_F_contig10591:3528..37061695995594.253919-CDS-E-fasciculatus_F_contig10591:3528..3706Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10591 3529..3706 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10591.473.1

>prot_E-fasciculatus_F_contig10591.473.1 ID=prot_E-fasciculatus_F_contig10591.473.1|Name=mRNA_E-fasciculatus_F_contig10591.473.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=189bp
MKGEPPSRCPPDRGGDGGHRSVDRGSSSLLSGVAVLAGVAVSGVSAAAAA
AASSRSEGGGGGVSRRAGPAAAAAVVASEEVATAKMEEVARVIGEVADGV
LKHVSDRMPGLEAFTLEILDTIFAPRLVLRHLMVAVALQTGLLTYNGLVM
VANRLLSRMSTRHGEAKAYRHKMRNAKNYEVRDVTVLS*
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mRNA from alignment at E-fasciculatus_F_contig10591:1076..4125+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10591.473.1 ID=mRNA_E-fasciculatus_F_contig10591.473.1|Name=mRNA_E-fasciculatus_F_contig10591.473.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3050bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10591:1076..4125+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCATCATCAACACGTGAGCTACTGCTCTCCGCTTTCCATCAGGTGGTGA
GCTCTCAAACGATGAAAGGCGAACCACCATCTAGGTGCCCGCCCGATAGA
GGGGGCGATGGTGGGCATAGATCGGTAGATCGAGGTTCTTCCTCGCTTCT
CTCCGGGGTGGCCGTGCTAGCGGGCGTGGCAGTTTCGGGTGTGTCCGCTG
CTGCCGCTGCTGCGGCATCATCAAGGTCCGAGGGCGGCGGTGGCGGTGTC
AGCCGTCGAGCAGGGCCTGCTGCCGCTGCTGCTGTCGTTGCGTCCGAGGA
GGTGGCAACCGCGAAGATGGAGGAGGTGGCCAGGGTGATCGGAGAGGTGG
CGGACGGGGTGCTCAAGCACGTGAGCGATCGGATGCCGGGGCTGGAGGCC
TTCACCCTGGAGATTCTGGACACCATATTTGCGCCAAGGCTGGTCTTGAG
GTTAGCCTCAGATGGATGCACCACGCCAGCATGGACGTGTGATAGCGGCG
TTCTTACTGTCTGGTCTCTAGGTGTATTGTTGTAGCGTGCCGTCGCGGAA
ATGGGTGGAATTTACGCGGAGAGATCGCCTTTCTAACACGTTGTTCCGTC
TAATAAAGTTCAATTACGGTTCCTATGTTGCAGTTGCAGTTGAAATCGGG
TTGTCGTTTGTTGTGTGTCGGATCGTGTCTGGTCCCTCTCCGTACCTGGG
TGAGCGCTTCAAAGGCGAGAGCAATCAGGGAGTGTGTGAACCTCCTAAAG
ATCCTGCATGTAGGCTTAATTTGCGTATACTCGGTCCCATTGTTGATGTT
GATGTTGGCGCACACTCTGTTGTAACAATCGTTCCGATCTACCGGTCCTG
TGCATCCGACGGACCTTGGGCCCATCTAATAGACTCCTTCCCGTGAGCCA
TAGACAAACTACTGCTGCATCCCCCATAAGGCACAAGCCTGAAGAACAAA
GGAGTAAGCAACAGGACCCGGAAAAACTGACGCGTACGCTTACAGCAGAT
GAAACCCAAGAGGATCAGAAGCCCTCGGTTGACGATAGTGTTTTTTTTTT
TTCCAAATCCCCTTTGACGGTCGCTCGCGGTTTCCACCGACCGCACGGTC
TTGTCTCTTTGAACCCAAGATGTTTTAGTTGAGTTCACACAGCAGGTATC
TGCTGCTAGCGTTGACTATGTTGCGAGTAGGAAGTACTGGTCATGTGCGA
CAACACTCTTTCGTCCGGGGCAAGGCGTCTTGTATTGATTACACGAGCAC
GCCAGAGGTTGCTGCAAAGTGGAATGTGCGACACTGTGACAAGCTGATAC
GTGCGGTACGGTACTGTAGCGTAGCGCGACAAGTGGTGTTTGTGTACCCT
GTTATTTGAGTTTTTGTATAGGTTGGGTGATTAGTCATGCAGGATTTCAA
TATGGAATATTGTATCAAACAGGAGGGATGTTTGGTGTACTTGATCCGAT
CTGCACAGTATGTGTGTGGGGGGGTATGCAGTTGGGGGTCCAAGTGCGGC
GGCCCTCGCGAGAGCCCGCGCAGGTGTTCACTGAGTTGTCTGAACTTATT
GTTTGACTTCGGGCCGTGCTGGAAGAGCACGTGTGTGTGACAATGAAGGT
TATATATCATCTGCATCGGTCCTGGGTTAACGTAGTCCCCAGACAGACGT
CATACCGTGGGTGGGCACGGCAACCTCCGTGGGTGGTCACGAGGGTACAC
AAACACGATGACCCCCCTCTCACTGGTTTTGGCACAAGACAGCATCAACA
CCATCCGTTCAGTTCTCACGCGTCGTCAGAGAGTGTTAGATCAGTATGGA
AGGGAACGGCAGAGGATGGCAGAGGAATAAGCCACCCAGCTTGGTATGCT
AACGCAGGAACTGAACGAATGATATTGATGGTGTCTTGTGCCAAAACCAG
TGAGAGGGGGGTCATCGTGTTTGTGTACCCCCGTGACAACCCACGGAGGT
TGCCGTGCCCACCCACGGAGGATACCGTGCCCACCCACGGTATGACGTCT
GTCTGGGGACTACAGTTCGGACAATTCATTGAAGACATGCGCGGGCTTCT
CACGAGGGGCCCCGCACTTGGACCCCAACATCATACCCCCCCACACATAT
ACTTTGCAGATTGGATCTTGTGTCCAAGTACCCCAAACAAGTGGCGAGCG
TGTCAAGGCAGCAGCGTGCACCTTTGTCGACGCAAACAGAACAGCAAGCG
TGGGCGCCCAGTTGCTCTCTTTCGTTGCGACCTACCCATCTACCCTCCTT
CTCTGTGCGCCAGCCGGTGCATGTTGACGTGGCGCACCTCATCTCTTGGA
TTGTACCACCACCCTGTTGACATGCCCGCCAGTGCGCCTACTACACCTGT
AATTTGTCCGCTTCCCTCCACTGCCTACTGCTGCTGCTGCTGCCCTGCCG
CCGCCTGTGGCACCTTGGGTGCACATTCTCCCTCTTTTGCGCCCGCGAAC
CAGGCACCTGATGGTGGCCGTTGCGTTGCAGACGGGGCTGCTTACGTACA
ACGGCCTCGTCATGGTGGCGAACCGGCTGCTGTCGAGGATGAGCACGCGG
CACGGAGAGGCGAAGGCCTACCGCCACAAGATGCGCAACGCTAAGAACTA
CGAGGTTCGTGACGTGACAGTGCTGTCTTGACAGGATTCTGGCCGACGGA
AGCACTGCTCTACACTAGGAAGTGTTTAGAGTAGGTTCAGCAGTACGGCA
CCGTCCTCAGTCGCACATGTGCGTTGAGATGCGGCCACACTATAAAACTA
TCCTTGCTTCAGACAAGCACACGGGTGGAAGTAAAGCAAACACTCGAAAC
GCAGGCGTGGTTTCGTGCATTCGCGACTTGTGATCATGGTACATATTGGG
AGGTAACCTTTGGTCTGCTTTTCTAAAGAGAGGGTTCGATTCAGACGTTG
ATTGTACTAAGCGGAATATGCACACGTTGGGAAACGCGTCGAGGATTCTA
GCGGCAGATCACCGAACGCCGAACGCGCGATTGCGATTGCGTTCTCCCCA
ATCCAGCGTTGGTATCTGTCTGTCTGTCTGCCTGTCTGCATGTCTGCCTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10591:1076..4125+

>mRNA_E-fasciculatus_F_contig10591.473.1 ID=mRNA_E-fasciculatus_F_contig10591.473.1|Name=mRNA_E-fasciculatus_F_contig10591.473.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1134bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10591:1076..4125+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAAGGCGAACCACCATCTAGGTGCCCGCCCGATAGAGGGGGCGATGG
TGGGCATAGATCGGTAGATCGAGGTTCTTCCTCGCTTCTCTCCGGGGTGG
CCGTGCTAGCGGGCGTGGCAGTTTCGGGTGTGTCCGCTGCTGCCGCTGCT
GCGGCATCATCAAGGTCCGAGGGCGGCGGTGGCGGTGTCAGCCGTCGAGC
AGGGCCTGCTGCCGCTGCTGCTGTCGTTGCGTCCGAGGAGGTGGCAACCG
CGAAGATGGAGGAGGTGGCCAGGGTGATCGGAGAGGTGGCGGACGGGGTG
CTCAAGCACGTGAGCGATCGGATGCCGGGGCTGGAGGCCTTCACCCTGGA
GATTCTGGACACCATATTTGCGCCAAGGCTGGTCTTGAGATGAAAGGCGA
ACCACCATCTAGGTGCCCGCCCGATAGAGGGGGCGATGGTGGGCATAGAT
CGGTAGATCGAGGTTCTTCCTCGCTTCTCTCCGGGGTGGCCGTGCTAGCG
GGCGTGGCAGTTTCGGGTGTGTCCGCTGCTGCCGCTGCTGCGGCATCATC
AAGGTCCGAGGGCGGCGGTGGCGGTGTCAGCCGTCGAGCAGGGCCTGCTG
CCGCTGCTGCTGTCGTTGCGTCCGAGGAGGTGGCAACCGCGAAGATGGAG
GAGGTGGCCAGGGTGATCGGAGAGGTGGCGGACGGGGTGCTCAAGCACGT
GAGCGATCGGATGCCGGGGCTGGAGGCCTTCACCCTGGAGATTCTGGACA
CCATATTTGCGCCAAGGCTGGTCTTGAGGCACCTGATGGTGGCCGTTGCG
TTGCAGACGGGGCTGCTTACGTACAACGGCCTCGTCATGGTGGCGAACCG
GCTGCTGTCGAGGATGAGCACGCGGCACGGAGAGGCGAAGGCCTACCGCC
ACAAGATGCGCAACGCTAAGAACTACGAGGTTCGTGACGTGACAGTGCTG
TCTTGAGCACCTGATGGTGGCCGTTGCGTTGCAGACGGGGCTGCTTACGT
ACAACGGCCTCGTCATGGTGGCGAACCGGCTGCTGTCGAGGATGAGCACG
CGGCACGGAGAGGCGAAGGCCTACCGCCACAAGATGCGCAACGCTAAGAA
CTACGAGGTTCGTGACGTGACAGTGCTGTCTTGA
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