mRNA_E-fasciculatus_F_contig10589.469.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10589.469.1
Unique NamemRNA_E-fasciculatus_F_contig10589.469.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10589.469.1 vs. uniprot
Match: A0A6H5JMF4_9PHAE (Vps8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF4_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 1.920e-73
Identity = 159/203 (78.33%), Postives = 162/203 (79.80%), Query Frame = 3 
Query:  411 SNVSPSRELERWRGDGXXXXXXXXXATLPPAASRGSGTAATAAGGLLSPRSFGGDDXXXXXXXXPESVSYSDPYSXXXXXXXXXSTYGDGN-GSLSGAPPRTAFLSRDEVSEDSRLLQQILRESEEEIAASAADRANGFGXXXXXXXXXXGAMTRLVSSVGGAGNDLYGAADDNLQSLDVDKIIESMELEAGEDDDVTGSRAG 1016
            SNVSPSRELERWR DG         A LPP AS+GS TAA AAGGLLSPRSFGG+D         ESV YSDPYS         STYGDGN GSLSGAPPRTAFLSRDEVSEDSRLLQQILRESEEEIAAS ADRANGFG  XXXXXXXX AMTRLVSSVGGAG+DLYGAADDNLQSLDVDKIIESMELEAGEDDDVTG   G
Sbjct:    2 SNVSPSRELERWRDDGGGGRGAGTSANLPPVASQGSATAA-AAGGLLSPRSFGGEDTSTKGGRGAESVGYSDPYSGGGGS----STYGDGNNGSLSGAPPRTAFLSRDEVSEDSRLLQQILRESEEEIAASVADRANGFGAGXXXXXXXXXAMTRLVSSVGGAGSDLYGAADDNLQSLDVDKIIESMELEAGEDDDVTGRAGG 199
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BLAST of mRNA_E-fasciculatus_F_contig10589.469.1 vs. uniprot
Match: D8LRX0_ECTSI (Vps8 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX0_ECTSI)

HSP 1 Score: 224 bits (570), Expect = 5.690e-62
Identity = 157/204 (76.96%), Postives = 159/204 (77.94%), Query Frame = 3 
Query:  414 NVSPSRELERWRGDGXXXXXXXXXATLPPAASRGSGTAATAAGGLLSPRSFGGDDXXXXXXXXPESVSYSDPYSXXXXXXXXXSTYGDGN-GSLSGAPPRTAFLSRDEVSEDSRLLQQILRESEEEIAASAADRANGFGXXXXXXXXXXG--AMTRLVSSVGGAGNDLYGAADDNLQSLDVDKIIESMELEAGEDDDVTGSRAG 1016
            NVSPSRELERWRGDG         A L P ASRGS TAA AAGGLLSPRSFGG+D         ESV YSD YS XXXXXXX   YGDGN GSLSGAPPRTAFLSRDEVSEDSRLLQQILRESEEEIAAS         XXXXXXXXXX   AMTRLVSSVGGAG+DLYGAADDNLQSLDVDKIIESMELEAGEDDDVTG   G
Sbjct:   10 NVSPSRELERWRGDGGGGRGAGTSANLLPVASRGSATAA-AAGGLLSPRSFGGEDTSTKRGGGAESVGYSDAYSGXXXXXXX---YGDGNNGSLSGAPPRTAFLSRDEVSEDSRLLQQILRESEEEIAASXXXXXXXXXXXXXXXXXXXXXXAMTRLVSSVGGAGSDLYGAADDNLQSLDVDKIIESMELEAGEDDDVTGRAGG 209
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10589.469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMF4_9PHAE1.920e-7378.33Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LRX0_ECTSI5.690e-6276.96Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10589contigE-fasciculatus_F_contig10589:2232..4090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score224.9
Seed ortholog evalue4.3e-56
Seed eggNOG ortholog2880.D8LRX0
KEGG koko:K20178
KEGG Pathwayko04138,map04138
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0006810,GO:0006886,GO:0006906,GO:0006996,GO:0007034,GO:0008104,GO:0008150,GO:0008270,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016050,GO:0016192,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0033263,GO:0034058,GO:0034613,GO:0042886,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046872,GO:0046907,GO:0046914,GO:0048284,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0061025,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090174,GO:0097708,GO:0099023
EggNOG free text desc.endosomal vesicle fusion
EggNOG OGsKOG2079@1,KOG2079@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size1016
Cds size792
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10589.469.1prot_E-fasciculatus_F_contig10589.469.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10589 2456..4090 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927556.4332666-UTR-E-fasciculatus_F_contig10589:2231..24551622927556.4332666-UTR-E-fasciculatus_F_contig10589:2231..2455Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10589 2232..2455 +
1695995593.9711072-UTR-E-fasciculatus_F_contig10589:2231..24551695995593.9711072-UTR-E-fasciculatus_F_contig10589:2231..2455Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10589 2232..2455 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927556.4460385-CDS-E-fasciculatus_F_contig10589:2455..26431622927556.4460385-CDS-E-fasciculatus_F_contig10589:2455..2643Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10589 2456..2643 +
1695995593.9822536-CDS-E-fasciculatus_F_contig10589:2455..26431695995593.9822536-CDS-E-fasciculatus_F_contig10589:2455..2643Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10589 2456..2643 +
1622927556.4800456-CDS-E-fasciculatus_F_contig10589:3486..40901622927556.4800456-CDS-E-fasciculatus_F_contig10589:3486..4090Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10589 3487..4090 +
1695995593.9916854-CDS-E-fasciculatus_F_contig10589:3486..40901695995593.9916854-CDS-E-fasciculatus_F_contig10589:3486..4090Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10589 3487..4090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10589.469.1

>prot_E-fasciculatus_F_contig10589.469.1 ID=prot_E-fasciculatus_F_contig10589.469.1|Name=mRNA_E-fasciculatus_F_contig10589.469.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=264bp
MDQDVEAILNAPDSDDDDGLNVQGVSLEDILREDDGGYYHDEDDLVVGHR
GDEAENPPHLLGSNVSPSRELERWRGDGGGGRGAGASATLPPAASRGSGT
AATAAGGLLSPRSFGGDDASAKGGGGPESVSYSDPYSGGGGGGGGSSTYG
DGNGSLSGAPPRTAFLSRDEVSEDSRLLQQILRESEEEIAASAADRANGF
GAGGGGGSGSGGAMTRLVSSVGGAGNDLYGAADDNLQSLDVDKIIESMEL
EAGEDDDVTGSRAG
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mRNA from alignment at E-fasciculatus_F_contig10589:2232..4090+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10589.469.1 ID=mRNA_E-fasciculatus_F_contig10589.469.1|Name=mRNA_E-fasciculatus_F_contig10589.469.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1859bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10589:2232..4090+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTGTGTTGTGTCTTTGCCTTTCCGGCTGGTACACAGCATCCCTGGTGTT
TGCCTTTGTTGAGACTAGACGGGCGATAGATGAGCCAAAGAGCGTTGAAC
TCGACTGTAATTGCAAGAGCCGAGCTTGCAGACGAACGGGAAAGCGGCAG
GACGTTCGTCCAAGTGTCAAAGGCATCAGCATAAGCCCTGCTGTGTGCTG
CTGCTTGCAGCAGTGAGCCGTGCCATGGATCAGGACGTCGAGGCCATCCT
GAACGCGCCAGACAGCGACGATGACGACGGCCTCAACGTGCAAGGGGTGA
GCCTTGAGGACATCTTGCGAGAGGATGATGGAGGCTACTACCATGACGAG
GACGATCTGGTGGTGGGCCACCGTGGCGATGAGGCGGAGAACCCTCCGCA
CCTGCTTGGAAGGCGAGACCACAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGAGCAGTACCTAGTAGGGATCAGATG
TTTGTTTGTGCCTGCGTGCTTGGTGCGAAACACTCACACAGCCCAGCATT
CAAGTTGCTAGCTGAGCCTGTTGTCCCATGGCGGGCGTTGTTGCTCCAAT
GCTGGTTGAAGCGATCACCCCTCTCTTGCTGCTTTTCATGCTCTTCTGGC
AAGGGCGTAAGAGACACTACCTGTAGGAACGTCGGGTGTTCGCCACAAGG
GAGGAAGCGCAACCATCTGCTTGGTTTCTCGCTTGTAATGCTGCTGCTCC
GCATTCCAGACGAGGTCCCAGGTTTAGAATGCCTGCTGTGCACAAAATCT
ATAGAGCTTGGACGACCCTCGATGGAATATTGCTGTAGTGATGTCTGGGG
ATTTGGTGGTGTGGCTGGCCGCATCAAAACTATTGTAACAATATTCAATT
CAAACGTGTGTTAGAACTTCGTGCCTCTTATAGGTAGTAGCCTTCGAAGC
ACAGCAGCTAAATCTATGCCACTGGCTTGGAACGAAACAAATGCGTTATG
TTGGTGCTGCTGTACAGCAGTCGATGCGCGTAGCTTTGGGCTACCAGCAC
AGCCGGCGGCTCTAGCTATTATATAGACCCCTGTTGTTGCCCTACAACAG
TACATGTCTTGGGCGAAACAGCAGAAGAATGCTTCCACCGATACAGGTCT
GTTGCAATGCCCTAACAAACATCAACAGTCGAATCCTTTACACTGACATC
CGTCCGTGCCAAATGCCCTTTGAATGCCCTTTTGAATGCCCTTTGAACCC
CACAGCAACGTGAGCCCTAGCCGCGAGCTAGAACGATGGCGAGGCGATGG
CGGCGGCGGGCGCGGGGCGGGCGCTTCAGCGACCCTTCCCCCCGCAGCCT
CCCGAGGTTCAGGTACCGCCGCCACCGCCGCGGGAGGCCTTCTGAGCCCG
CGCTCCTTCGGCGGAGACGACGCCAGCGCCAAGGGGGGCGGGGGCCCCGA
AAGCGTCAGCTACAGCGACCCTTACAGCGGGGGCGGTGGCGGCGGCGGCG
GCAGCAGCACCTACGGAGACGGCAACGGCTCCCTGTCGGGGGCGCCGCCG
CGGACGGCGTTCCTCAGCCGGGACGAGGTCTCGGAGGACTCTCGGCTGCT
GCAGCAGATCCTGAGGGAGAGCGAGGAGGAGATAGCGGCGTCTGCCGCTG
ACCGCGCCAACGGCTTCGGCGCCGGGGGCGGGGGCGGTAGCGGTAGTGGT
GGTGCCATGACTAGACTCGTCTCATCGGTCGGGGGAGCGGGGAACGACCT
GTACGGAGCCGCGGACGACAACCTGCAAAGCCTGGACGTGGACAAGATTA
TCGAGTCCATGGAGCTGGAGGCCGGCGAGGACGACGATGTTACGGGCAGC
AGGGCGGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10589:2232..4090+

>mRNA_E-fasciculatus_F_contig10589.469.1 ID=mRNA_E-fasciculatus_F_contig10589.469.1|Name=mRNA_E-fasciculatus_F_contig10589.469.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1584bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10589:2232..4090+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGATCAGGACGTCGAGGCCATCCTGAACGCGCCAGACAGCGACGATGA
CGACGGCCTCAACGTGCAAGGGGTGAGCCTTGAGGACATCTTGCGAGAGG
ATGATGGAGGCTACTACCATGACGAGGACGATCTGGTGGTGGGCCACCGT
GGCGATGAGGCGGAGAACCCTCCGCACCTGCTTGGAAGATGGATCAGGAC
GTCGAGGCCATCCTGAACGCGCCAGACAGCGACGATGACGACGGCCTCAA
CGTGCAAGGGGTGAGCCTTGAGGACATCTTGCGAGAGGATGATGGAGGCT
ACTACCATGACGAGGACGATCTGGTGGTGGGCCACCGTGGCGATGAGGCG
GAGAACCCTCCGCACCTGCTTGGAAGCAACGTGAGCCCTAGCCGCGAGCT
AGAACGATGGCGAGGCGATGGCGGCGGCGGGCGCGGGGCGGGCGCTTCAG
CGACCCTTCCCCCCGCAGCCTCCCGAGGTTCAGGTACCGCCGCCACCGCC
GCGGGAGGCCTTCTGAGCCCGCGCTCCTTCGGCGGAGACGACGCCAGCGC
CAAGGGGGGCGGGGGCCCCGAAAGCGTCAGCTACAGCGACCCTTACAGCG
GGGGCGGTGGCGGCGGCGGCGGCAGCAGCACCTACGGAGACGGCAACGGC
TCCCTGTCGGGGGCGCCGCCGCGGACGGCGTTCCTCAGCCGGGACGAGGT
CTCGGAGGACTCTCGGCTGCTGCAGCAGATCCTGAGGGAGAGCGAGGAGG
AGATAGCGGCGTCTGCCGCTGACCGCGCCAACGGCTTCGGCGCCGGGGGC
GGGGGCGGTAGCGGTAGTGGTGGTGCCATGACTAGACTCGTCTCATCGGT
CGGGGGAGCGGGGAACGACCTGTACGGAGCCGCGGACGACAACCTGCAAA
GCCTGGACGTGGACAAGATTATCGAGTCCATGGAGCTGGAGGCCGGCGAG
GACGACGATGTTACGGGCAGCAGGGCGGGCCAACGTGAGCCCTAGCCGCG
AGCTAGAACGATGGCGAGGCGATGGCGGCGGCGGGCGCGGGGCGGGCGCT
TCAGCGACCCTTCCCCCCGCAGCCTCCCGAGGTTCAGGTACCGCCGCCAC
CGCCGCGGGAGGCCTTCTGAGCCCGCGCTCCTTCGGCGGAGACGACGCCA
GCGCCAAGGGGGGCGGGGGCCCCGAAAGCGTCAGCTACAGCGACCCTTAC
AGCGGGGGCGGTGGCGGCGGCGGCGGCAGCAGCACCTACGGAGACGGCAA
CGGCTCCCTGTCGGGGGCGCCGCCGCGGACGGCGTTCCTCAGCCGGGACG
AGGTCTCGGAGGACTCTCGGCTGCTGCAGCAGATCCTGAGGGAGAGCGAG
GAGGAGATAGCGGCGTCTGCCGCTGACCGCGCCAACGGCTTCGGCGCCGG
GGGCGGGGGCGGTAGCGGTAGTGGTGGTGCCATGACTAGACTCGTCTCAT
CGGTCGGGGGAGCGGGGAACGACCTGTACGGAGCCGCGGACGACAACCTG
CAAAGCCTGGACGTGGACAAGATTATCGAGTCCATGGAGCTGGAGGCCGG
CGAGGACGACGATGTTACGGGCAGCAGGGCGGGC
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