mRNA_E-fasciculatus_F_contig10584.465.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10584.465.1
Unique NamemRNA_E-fasciculatus_F_contig10584.465.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10584.465.1 vs. uniprot
Match: A0A6H5K9A9_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9A9_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 3.350e-44
Identity = 74/83 (89.16%), Postives = 80/83 (96.39%), Query Frame = 3 
Query:    3 DQMNVKFMMDRSMRQDVAFLRWPIPRLVCVLPAPESGAKPLEEKDRSFEEWSATLRTWCLGGKRKGKWAATQKLRLFFLCPYD 251
            DQMNVKFMMDRS++QD+AFLRWPIPRLVCVLPAPESGAKPLEEKDRSF++WSATLR WCLGGKRKGK  AT+KLRLFFLCPYD
Sbjct:  719 DQMNVKFMMDRSIKQDLAFLRWPIPRLVCVLPAPESGAKPLEEKDRSFDKWSATLRNWCLGGKRKGKGVATRKLRLFFLCPYD 801
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10584.465.1 vs. uniprot
Match: A0A6H5L2L4_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L4_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 5.500e-43
Identity = 74/83 (89.16%), Postives = 77/83 (92.77%), Query Frame = 3 
Query:    3 DQMNVKFMMDRSMRQDVAFLRWPIPRLVCVLPAPESGAKPLEEKDRSFEEWSATLRTWCLGGKRKGKWAATQKLRLFFLCPYD 251
            DQMNVK MMDRSMRQDVAFLRWPIPRLVCVLPAPESGAKPLEE DRSFE+WSATLR WCLGGKR GK  AT+KLR+FFLCPYD
Sbjct:  708 DQMNVKLMMDRSMRQDVAFLRWPIPRLVCVLPAPESGAKPLEEGDRSFEQWSATLRNWCLGGKRTGKGFATRKLRMFFLCPYD 790
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10584.465.1 vs. uniprot
Match: D7FU35_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU35_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 3.650e-42
Identity = 73/83 (87.95%), Postives = 77/83 (92.77%), Query Frame = 3 
Query:    3 DQMNVKFMMDRSMRQDVAFLRWPIPRLVCVLPAPESGAKPLEEKDRSFEEWSATLRTWCLGGKRKGKWAATQKLRLFFLCPYD 251
            DQMNVKFMMDRSMRQDVAFLRWPIPRLVCVLPAPES AKPLEEKDRSFE+WSATLR WC+ GKR GK  AT+KLR+FFLCPYD
Sbjct:  995 DQMNVKFMMDRSMRQDVAFLRWPIPRLVCVLPAPESRAKPLEEKDRSFEQWSATLRNWCVDGKRTGKGFATRKLRVFFLCPYD 1077
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10584.465.1 vs. uniprot
Match: A0A6H5JXU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU4_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 8.610e-36
Identity = 63/75 (84.00%), Postives = 69/75 (92.00%), Query Frame = 3 
Query:   15 VKFMMDRSMRQDVAFLRWPIPRLVCVLPAPESGAKPLEEKDRSFEEWSATLRTWCLGGKRKGKWAATQKLRLFFL 239
            VKFM DRS+RQD AFL+WPIPRL+C+LPAP+SGAKPLEEKD SFEEWSATLR WCLGGKRKGK  AT+KLRLFFL
Sbjct:  278 VKFMTDRSIRQDAAFLQWPIPRLLCLLPAPKSGAKPLEEKDGSFEEWSATLRKWCLGGKRKGKGVATRKLRLFFL 352
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10584.465.1 vs. uniprot
Match: D8LLG1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG1_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 6.070e-24
Identity = 48/72 (66.67%), Postives = 57/72 (79.17%), Query Frame = 3 
Query:   36 SMRQDVAFLRWPIPRLVCVLPAPESGAKPLEEKDRSFEEWSATLRTWCLGGKRKGKWAATQKLRLFFLCPYD 251
            S+ ++VAFL WPIP L+CVLPA ESGAKPL+E+DRSFEEWS  L+  C  G + G+  ATQKLRLFFLCP D
Sbjct:  874 SLARNVAFLLWPIPSLMCVLPARESGAKPLDERDRSFEEWSTVLQKRCSEGNKMGRGVATQKLRLFFLCPLD 945
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10584.465.1 vs. uniprot
Match: D7FUH6_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH6_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 8.090e-11
Identity = 39/88 (44.32%), Postives = 49/88 (55.68%), Query Frame = 3 
Query:   45 QDVAFLRWPIPRLVCVLPAPESGAKPLEEKDRSFEEWSATLRTWC------------------LG-GKRKGKWAATQKLRLFFLCPYD 251
            ++VA LRWPIPR VCVLPA ++    L E DRSFE+WS  L+ WC                  LG  K + +   T++LRLFFLC  D
Sbjct:  881 REVAILRWPIPRFVCVLPARDTR---LSESDRSFEKWSTALKEWCASKSPAKDAKNPNRKTSILGLNKPQLRGLVTRELRLFFLCGQD 965
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10584.465.1 vs. uniprot
Match: A0A6H5JXK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK6_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 7.140e-5
Identity = 29/67 (43.28%), Postives = 38/67 (56.72%), Query Frame = 3 
Query:   36 SMRQDVAFLRWPIPRLVCVLPAPESGAKPLEEKDRSFEEWSATLRTWCLGGKRKGKWAATQKLRLFF 236
            S+ Q+VAF+RWPIPRLV +L AP+SG   L  + R                + KG+   T+KLRLFF
Sbjct:  225 SIAQNVAFMRWPIPRLVWLLLAPDSGEPALTAEQRC--------------NQAKGRRLVTRKLRLFF 277
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10584.465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K9A9_9PHAE3.350e-4489.16Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L2L4_9PHAE5.500e-4389.16Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FU35_ECTSI3.650e-4287.95LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5JXU4_9PHAE8.610e-3684.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLG1_ECTSI6.070e-2466.67LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FUH6_ECTSI8.090e-1144.32LRR-GTPase of the ROCO family, incomplete sequence... [more]
A0A6H5JXK6_9PHAE7.140e-543.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10584contigE-fasciculatus_F_contig10584:668..1179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.8
Seed ortholog evalue1.7e-35
Seed eggNOG ortholog2880.D7FU35
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size252
Cds size243
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10584.465.1prot_E-fasciculatus_F_contig10584.465.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10584 676..1179 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927556.0447018-UTR-E-fasciculatus_F_contig10584:667..6751622927556.0447018-UTR-E-fasciculatus_F_contig10584:667..675Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10584 668..675 +
1695995593.7679799-UTR-E-fasciculatus_F_contig10584:667..6751695995593.7679799-UTR-E-fasciculatus_F_contig10584:667..675Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10584 668..675 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927556.0547922-CDS-E-fasciculatus_F_contig10584:675..7311622927556.0547922-CDS-E-fasciculatus_F_contig10584:675..731Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10584 676..731 +
1695995593.7783542-CDS-E-fasciculatus_F_contig10584:675..7311695995593.7783542-CDS-E-fasciculatus_F_contig10584:675..731Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10584 676..731 +
1622927556.0666237-CDS-E-fasciculatus_F_contig10584:992..11791622927556.0666237-CDS-E-fasciculatus_F_contig10584:992..1179Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10584 993..1179 +
1695995593.787647-CDS-E-fasciculatus_F_contig10584:992..11791695995593.787647-CDS-E-fasciculatus_F_contig10584:992..1179Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10584 993..1179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10584.465.1

>prot_E-fasciculatus_F_contig10584.465.1 ID=prot_E-fasciculatus_F_contig10584.465.1|Name=mRNA_E-fasciculatus_F_contig10584.465.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=81bp
MNVKFMMDRSMRQDVAFLRWPIPRLVCVLPAPESGAKPLEEKDRSFEEWS
ATLRTWCLGGKRKGKWAATQKLRLFFLCPYD
back to top

mRNA from alignment at E-fasciculatus_F_contig10584:668..1179+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10584.465.1 ID=mRNA_E-fasciculatus_F_contig10584.465.1|Name=mRNA_E-fasciculatus_F_contig10584.465.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=512bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10584:668..1179+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGATCAGATGAACGTCAAGTTCATGATGGATAGAAGCATGAGGCAGGAC
GTGGCCTTCCTACGGTGAGCACTCATTGTGGTATGTATGGTTCGAATACA
CATTGTTTGTACAATTATTGAATGCGTAGCGTTAGGTGCCACGTATTCGG
AAACGAATGGTCAAATGTTGCCCGCACAGCACCCCGCGCCTACACTCCAG
CTACTTGTACATCGTCCCGTGGTAGATACACAAAGCTCGGAGGTTGAAGG
CACAAGTTCAAGTGGACGGATGCGAATCCTCGATGTAACTAACGCCAGGG
TCCTTCTGTTTCGTTTGAACCTCAGGTGGCCGATCCCCCGCCTGGTTTGT
GTGCTCCCCGCCCCCGAGAGCGGGGCGAAGCCCCTTGAGGAGAAAGATAG
GTCATTCGAGGAATGGTCGGCCACCCTGCGGACCTGGTGCCTCGGCGGGA
AGAGGAAGGGCAAGTGGGCTGCGACGCAAAAGCTGCGGCTGTTCTTCCTC
TGTCCGTACGAC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10584:668..1179+

>mRNA_E-fasciculatus_F_contig10584.465.1 ID=mRNA_E-fasciculatus_F_contig10584.465.1|Name=mRNA_E-fasciculatus_F_contig10584.465.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=486bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10584:668..1179+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAACGTCAAGTTCATGATGGATAGAAGCATGAGGCAGGACGTGGCCTT
CCTACGATGAACGTCAAGTTCATGATGGATAGAAGCATGAGGCAGGACGT
GGCCTTCCTACGGTGGCCGATCCCCCGCCTGGTTTGTGTGCTCCCCGCCC
CCGAGAGCGGGGCGAAGCCCCTTGAGGAGAAAGATAGGTCATTCGAGGAA
TGGTCGGCCACCCTGCGGACCTGGTGCCTCGGCGGGAAGAGGAAGGGCAA
GTGGGCTGCGACGCAAAAGCTGCGGCTGTTCTTCCTCTGTCCGTACGACG
TGGCCGATCCCCCGCCTGGTTTGTGTGCTCCCCGCCCCCGAGAGCGGGGC
GAAGCCCCTTGAGGAGAAAGATAGGTCATTCGAGGAATGGTCGGCCACCC
TGCGGACCTGGTGCCTCGGCGGGAAGAGGAAGGGCAAGTGGGCTGCGACG
CAAAAGCTGCGGCTGTTCTTCCTCTGTCCGTACGAC
back to top